Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0029100 Rhododendron simsii HOM05D003084 ORTHO05D003580 4.4e-78 294.7 162 100.0
Rhsim04G0092700 Rhododendron simsii HOM05D003084 ORTHO05D003580 2.9e-61 238.8 168 78.0
Rhsim04G0090100 Rhododendron simsii HOM05D003084 ORTHO05D003580 3.3e-57 225.3 177 72.9
Rhsim04G0095500 Rhododendron simsii HOM05D003084 ORTHO05D003580 3.4e-54 215.3 177 71.2
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 5.5e-36 154.8 169 55.0
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 2.0e-33 146.4 170 52.9
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.6e-30 136.7 168 50.6
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.0e-29 134.0 168 48.8
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 1.3e-29 133.7 168 49.4
CSS0033238 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 2.2e-29 132.9 168 49.4
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 5.0e-29 131.7 168 48.8
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 5.0e-29 131.7 168 48.8
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 5.0e-29 131.7 109 65.1
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 4.2e-28 128.6 169 46.7
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 7.2e-28 127.9 168 46.4
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 1.2e-27 127.1 169 46.2
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 1.2e-27 127.1 161 47.8
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 1.2e-27 127.1 168 46.4
CSS0000201 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 1.1e-25 120.6 88 71.6
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 1.1e-25 120.6 170 42.9
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 3.3e-25 119.0 170 43.5
Dinv04117 Davidia involucrata HOM05D003084 ORTHO05D003580 1.7e-24 116.7 168 44.0
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 6.3e-24 114.8 168 41.7
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 6.3e-24 114.8 168 44.6
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 6.3e-24 114.8 168 44.6
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 6.3e-24 114.8 106 56.6
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.4e-23 113.6 168 44.0
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 1.8e-23 113.2 171 43.3
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 2.4e-23 112.8 168 41.1
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 4.1e-23 112.1 169 43.8
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 2.7e-22 109.4 168 44.0
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 3.5e-22 109.0 169 41.4
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 5.9e-22 108.2 168 44.0
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 7.7e-22 107.8 163 41.7
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 1.0e-21 107.5 168 43.5
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 1.0e-21 107.5 168 43.5
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 1.7e-21 106.7 168 42.9
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 2.2e-21 106.3 170 42.9
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 3.8e-21 105.5 170 40.0
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 3.8e-21 105.5 170 40.0
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 3.8e-21 105.5 168 42.9
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 8.5e-21 104.4 168 41.7
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 8.5e-21 104.4 175 42.3
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 1.1e-20 104.0 170 38.8
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 1.5e-20 103.6 161 41.6
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 1.5e-20 103.6 168 41.7
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.9e-20 103.2 175 41.7
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 1.9e-20 103.2 175 41.7
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 3.2e-20 102.4 165 41.2
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 3.2e-20 102.4 175 41.1
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 3.2e-20 102.4 167 41.9
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 4.2e-20 102.1 175 41.1
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 4.2e-20 102.1 166 41.6
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 7.2e-20 101.3 175 40.6
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 9.4e-20 100.9 178 39.9
arahy.Tifrunner.gnm1.ann1.8HD4Y1 Arachis hypogaea HOM05D003084 ORTHO05D003580 1.2e-19 100.5 88 61.4
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 1.2e-19 100.5 165 41.8
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 2.1e-19 99.8 172 41.3
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 2.1e-19 99.8 166 39.2
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 4.7e-19 98.6 169 40.2
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 4.7e-19 98.6 170 40.0
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 8.0e-19 97.8 106 53.8
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 1.0e-18 97.4 165 40.0
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 1.4e-18 97.1 165 40.0
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 1.8e-18 96.7 161 41.0
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 3.0e-18 95.9 166 39.2
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 4.0e-18 95.5 103 51.5
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 5.2e-18 95.1 167 37.1
FvH4_4g00110 Fragaria vesca HOM05D003084 ORTHO05D003580 6.8e-18 94.7 84 57.1
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 8.8e-18 94.4 164 37.8
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 1.2e-17 94.0 175 38.9
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 2.0e-17 93.2 164 37.2
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 2.0e-17 93.2 162 39.5
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 5.7e-17 91.7 166 38.0
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.3e-16 90.5 164 36.6
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 1.3e-16 90.5 91 58.2
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 1.7e-16 90.1 164 36.6
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 2.2e-16 89.7 158 40.5
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 2.8e-16 89.4 166 37.3
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 2.8e-16 89.4 166 37.3
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 2.8e-16 89.4 164 37.2
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 2.8e-16 89.4 167 38.9
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 6.3e-16 88.2 164 36.0
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 8.3e-16 87.8 86 55.8
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 8.3e-16 87.8 171 38.6
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 8.3e-16 87.8 171 38.6
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 1.1e-15 87.4 158 36.1
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 1.1e-15 87.4 166 34.3
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 1.4e-15 87.0 168 36.3
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 1.4e-15 87.0 180 37.8
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 1.4e-15 87.0 166 37.3
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 1.4e-15 87.0 166 37.3
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 1.4e-15 87.0 158 36.7
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 2.4e-15 86.3 105 48.6
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 2.4e-15 86.3 104 48.1
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 3.1e-15 85.9 167 35.9
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 3.1e-15 85.9 105 50.5
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 7.0e-15 84.7 162 38.3
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 7.0e-15 84.7 92 55.4
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 7.0e-15 84.7 162 39.5
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 9.1e-15 84.3 162 38.9
BcaB04g19962 Brassica carinata HOM05D003084 ORTHO05D003580 9.1e-15 84.3 91 56.0
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 1.2e-14 84.0 162 39.5
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 1.2e-14 84.0 162 39.5
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 1.6e-14 83.6 163 35.6
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 2.0e-14 83.2 162 39.5
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 2.0e-14 83.2 105 50.5
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 2.7e-14 82.8 178 38.2
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 5.9e-14 81.6 91 51.6
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 5.9e-14 81.6 158 36.7
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 5.9e-14 81.6 165 33.9
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 7.7e-14 81.3 162 35.8
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 1.0e-13 80.9 172 34.3
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 1.3e-13 80.5 162 37.7
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 2.2e-13 79.7 161 37.3
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 3.8e-13 79.0 84 48.8
Actinidia38788 Actinidia chinensis HOM05D003084 ORTHO05D003580 6.5e-13 78.2 56 67.9
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 8.5e-13 77.8 162 37.0
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 8.5e-13 77.8 161 36.6
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 1.1e-12 77.4 158 32.9
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 1.5e-12 77.0 158 32.3
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 1.9e-12 76.6 162 36.4
Oeu052036.1 Olea europaea HOM05D003084 ORTHO05D003580 5.5e-12 75.1 85 44.7
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 7.2e-12 74.7 88 45.5
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 2.1e-11 73.2 164 33.5
C03p62010 Brassica napus HOM05D003084 ORTHO05D003580 2.7e-11 72.8 164 36.0
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 2.7e-11 72.8 164 36.0
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 2.7e-11 72.8 164 36.0
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 3.6e-11 72.4 80 46.2
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 8.0e-11 71.2 107 41.1
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 8.0e-11 71.2 165 31.5
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 1.0e-10 70.9 164 36.0
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 4.4e-09 65.5 173 31.2
Sc25g0002420 Simmondsia chinensis HOM05D003084 ORTHO05D003580 9.8e-09 64.3 142 35.9
Pp3c7_19180 Physcomitrium patens HOM05D003084 ORTHO05D003580 3.7e-08 62.4 80 42.5
HPP92_010381 Vanilla planifolia HOM05D003084 ORTHO05D003580 1.8e-07 60.1 81 44.4
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 3.1e-07 59.3 178 28.1
Os02g0147300 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 3.1e-07 59.3 178 28.1
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 4.5e-06 55.5 116 31.9
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 4.5e-06 55.5 116 31.9


User provided reference genes

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