Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RhsimUnG0002700 Rhododendron simsii HOM05D001470 ORTHO05D338819 5.6e-59 230.7 116 100.0
Rhsim11G0069700 Rhododendron simsii HOM05D001470 ORTHO05D006756 1.4e-17 93.2 79 63.3
vmacro00847 Vaccinium macrocarpon HOM05D001470 ORTHO05D006756 1.4e-17 93.2 79 63.3
Actinidia03460 Actinidia chinensis HOM05D001470 ORTHO05D006756 4.1e-17 91.7 79 62.0
CSS0038151 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006756 9.1e-17 90.5 52 88.5
CSS0043529 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006756 9.1e-17 90.5 52 88.5
Hma1.2p1_0129F.1_g060420 Hydrangea macrophylla HOM05D001470 ORTHO05D006756 9.1e-17 90.5 52 88.5
Hma1.2p1_0129F.1_g060430 Hydrangea macrophylla HOM05D001470 ORTHO05D006756 9.1e-17 90.5 52 88.5
CSS0028817 Camellia sinensis var. sinensis HOM05D001470 ORTHO05D006756 1.2e-16 90.1 52 86.5
COL.COLO4_37946 Corchorus olitorius HOM05D001470 ORTHO05D006756 1.2e-16 90.1 52 88.5
Nn5g28359 Nelumbo nucifera HOM05D001470 ORTHO05D006756 1.2e-16 90.1 52 88.5
ECA246G2621 Erigeron canadensis HOM05D001470 ORTHO05D006756 1.6e-16 89.7 52 86.5
HanXRQChr17g0541081 Helianthus annuus HOM05D001470 ORTHO05D006756 1.6e-16 89.7 52 86.5
Hma1.2p1_0054F.1_g031130 Hydrangea macrophylla HOM05D001470 ORTHO05D006756 1.6e-16 89.7 52 88.5
Lsat_1_v5_gn_3_34541 Lactuca sativa HOM05D001470 ORTHO05D006756 2.0e-16 89.4 52 86.5
Lj4A633G16 Lonicera japonica HOM05D001470 ORTHO05D006756 2.0e-16 89.4 79 60.8
Ah.05g170940 Amaranthus hybridus HOM05D001470 ORTHO05D006756 2.7e-16 89.0 52 86.5
EL10Ac1g01041 Beta vulgaris HOM05D001470 ORTHO05D006756 2.7e-16 89.0 52 86.5
AUR62014313 Chenopodium quinoa HOM05D001470 ORTHO05D006756 2.7e-16 89.0 52 86.5
SGA_v2.0_scaffold24G10439 Striga asiatica HOM05D001470 ORTHO05D006756 3.5e-16 88.6 52 84.6
CANSAT25G1662 Cannabis sativa HOM05D001470 ORTHO05D006756 4.5e-16 88.2 52 86.5
QL09p033894 Quercus lobata HOM05D001470 ORTHO05D006756 4.5e-16 88.2 52 86.5
Hund17307 Selenicereus undatus HOM05D001470 ORTHO05D006756 4.5e-16 88.2 52 86.5
Atru.chr13.1511 Acer truncatum HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
Cfa018570 Carpinus fangiana HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
ClCG00G002270 Citrullus lanatus HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
ClCG08G005860 Citrullus lanatus HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
Ciclev10001597m.g Citrus clementina HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
Haze_17510 Corylus avellana HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
MELO3C010631.2 Cucumis melo HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
CsaV3_6G034260 Cucumis sativus L. HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
DCAR_026835 Daucus carota HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 84.6
Duzib093G0261 Durio zibethinus HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
Duzib116G0621 Durio zibethinus HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
Eucgr.F04342 Eucalyptus grandis HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
Manes.18G079501 Manihot esculenta HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
Prupe.1G493300 Prunus persica HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
Sed0023365 Sechium edule HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
GSVIVG01008841001 Vitis vinifera HOM05D001470 ORTHO05D006756 5.9e-16 87.8 52 86.5
AUR62019054 Chenopodium quinoa HOM05D001470 ORTHO05D006756 7.7e-16 87.4 52 84.6
Dinv27288 Davidia involucrata HOM05D001470 ORTHO05D006756 7.7e-16 87.4 52 84.6
Sc07g0004500 Simmondsia chinensis HOM05D001470 ORTHO05D006756 7.7e-16 87.4 52 82.7
Nitab4.5_0005296g0020 Nicotiana tabacum HOM05D001470 ORTHO05D006756 1.0e-15 87.0 52 84.6
Peaxi162Scf00051g01416 Petunia axillaris HOM05D001470 ORTHO05D006756 1.0e-15 87.0 52 84.6
Sopen06g020270 Solanum pennellii HOM05D001470 ORTHO05D006756 1.0e-15 87.0 52 84.6
Cc10_g12180 Coffea canephora HOM05D001470 ORTHO05D006756 1.3e-15 86.7 52 82.7
PSO170G0410 Papaver somniferum HOM05D001470 ORTHO05D006756 1.3e-15 86.7 52 84.6
PSO528G0178 Papaver somniferum HOM05D001470 ORTHO05D006756 1.3e-15 86.7 52 84.6
Thecc.08G128800 Theobroma cacao HOM05D001470 ORTHO05D006756 1.3e-15 86.7 52 84.6
TWI32G1289 Tripterygium wilfordii HOM05D001470 ORTHO05D006756 1.3e-15 86.7 59 76.3
TWI60G1154 Tripterygium wilfordii HOM05D001470 ORTHO05D006756 1.3e-15 86.7 52 84.6
TAR376G0409 Trochodendron aralioides HOM05D001470 ORTHO05D006756 1.3e-15 86.7 52 84.6
CiPaw.16G026200 Carya illinoinensis HOM05D001470 ORTHO05D006756 1.7e-15 86.3 52 84.6
MD15G1345300 Malus domestica HOM05D001470 ORTHO05D006756 1.7e-15 86.3 52 84.6
Potri.002G081200 Populus trichocarpa HOM05D001470 ORTHO05D006756 1.7e-15 86.3 52 84.6
Cpa.g.sc64.112 Carica papaya HOM05D001470 ORTHO05D006756 2.2e-15 85.9 52 82.7
MD00G1028800 Malus domestica HOM05D001470 ORTHO05D006756 2.2e-15 85.9 52 84.6
Nitab4.5_0000322g0050 Nicotiana tabacum HOM05D001470 ORTHO05D006756 2.2e-15 85.9 97 51.5
RcHm_v2.0_Chr6g0296261 Rosa chinensis HOM05D001470 ORTHO05D006756 2.2e-15 85.9 52 84.6
arahy.Tifrunner.gnm1.ann1.0P0L33 Arachis hypogaea HOM05D001470 ORTHO05D006756 2.9e-15 85.5 53 83.0
Ca_16563_v3 Cicer arietinum L. HOM05D001470 ORTHO05D006756 2.9e-15 85.5 52 84.6
Lalb_Chr11g0065951 Lupinus albus HOM05D001470 ORTHO05D006756 2.9e-15 85.5 59 76.3
Medtr3g088120 Medicago truncatula HOM05D001470 ORTHO05D006756 2.9e-15 85.5 52 84.6
PGR044G0286 Punica granatum HOM05D001470 ORTHO05D006756 2.9e-15 85.5 51 86.3
THA.LOC104800207 Tarenaya hassleriana HOM05D001470 ORTHO05D006756 2.9e-15 85.5 51 86.3
TPR.G21071 Trifolium pratense HOM05D001470 ORTHO05D006756 2.9e-15 85.5 52 84.6
Gohir.A05G236800 Gossypium hirsutum HOM05D001470 ORTHO05D006756 3.8e-15 85.1 52 84.6
Gohir.D05G238900 Gossypium hirsutum HOM05D001470 ORTHO05D006756 3.8e-15 85.1 52 84.6
Gorai.009G247600 Gossypium raimondii HOM05D001470 ORTHO05D006756 3.8e-15 85.1 52 84.6
Psat5g086560 Pisum sativum HOM05D001470 ORTHO05D006756 3.8e-15 85.1 52 84.6
Aqoxy6G00254 Aquilegia oxysepala HOM05D001470 ORTHO05D006756 5.0e-15 84.7 52 80.8
arahy.Tifrunner.gnm1.ann1.D58UPY Arachis hypogaea HOM05D001470 ORTHO05D006756 5.0e-15 84.7 53 81.1
Oeu037225.1 Olea europaea HOM05D001470 ORTHO05D006756 5.0e-15 84.7 52 80.8
AagrBONN_evm.TU.Sc2ySwM_344.153 Anthoceros agrestis HOM05D001470 ORTHO05D006756 6.5e-15 84.3 59 74.6
SGA_v2.0_scaffold52G18953 Striga asiatica HOM05D001470 ORTHO05D006756 6.5e-15 84.3 52 80.8
MSTRG.25372 Avicennia marina HOM05D001470 ORTHO05D006756 8.5e-15 84.0 52 80.8
Solyc06g060150.3 Solanum lycopersicum HOM05D001470 ORTHO05D006756 8.5e-15 84.0 52 82.7
TAR628G0775 Trochodendron aralioides HOM05D001470 ORTHO05D006756 1.1e-14 83.6 59 74.6
MBI06_g04545_MAGBIO Magnolia biondii HOM05D001470 ORTHO05D006756 1.5e-14 83.2 52 82.7
ATR0709G002 Amborella trichopoda HOM05D001470 ORTHO05D006756 1.9e-14 82.8 52 80.8
CAN.G643.3 Capsicum annuum HOM05D001470 ORTHO05D006756 1.9e-14 82.8 52 80.8
Glyma.04G248900 Glycine max HOM05D001470 ORTHO05D006756 1.9e-14 82.8 59 74.6
Glyma.06G114100 Glycine max HOM05D001470 ORTHO05D006756 1.9e-14 82.8 59 74.6
CDE06G1142 Ceratophyllum demersum HOM05D001470 ORTHO05D006756 2.5e-14 82.4 52 82.7
Sabra02G0063600 Salix brachista HOM05D001470 ORTHO05D006756 3.2e-14 82.0 52 80.8
Phvul.009G126000 Phaseolus vulgaris HOM05D001470 ORTHO05D006756 4.2e-14 81.6 52 80.8
SalBow7G2997 Salvia bowleyana HOM05D001470 ORTHO05D006756 4.2e-14 81.6 53 75.5
SMO329G0082 Selaginella moellendorffii HOM05D001470 ORTHO05D006756 4.2e-14 81.6 80 62.5
Migut.C01109 Erythranthe guttata HOM05D001470 ORTHO05D006756 5.5e-14 81.3 52 78.8
A02p21300 Brassica napus HOM05D001470 ORTHO05D006756 7.2e-14 80.9 52 80.8
Pp3c13_4510 Physcomitrium patens HOM05D001470 ORTHO05D006756 7.2e-14 80.9 79 57.0
Aa31LG4G7480 Aethionema arabicum HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
AL2G37670 Arabidopsis lyrata HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
AT1G77470 Arabidopsis thaliana HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
BcaB02g07107 Brassica carinata HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
BcaB05g25051 Brassica carinata HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
BcaC03g15740 Brassica carinata HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
BcaC08g45476 Brassica carinata HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
A07p27990 Brassica napus HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
C02p34610 Brassica napus HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
C06p31240 Brassica napus HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
BolC2t09486H Brassica oleracea HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
BolC6t38263H Brassica oleracea HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
BraA02t07148Z Brassica rapa HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
BraA07t30444Z Brassica rapa HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
CARHR070990 Cardamine hirsuta HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
Thhalv10018756m.g Eutrema salsugineum HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
Sp5g32630 Schrenkiella parvula HOM05D001470 ORTHO05D006756 9.4e-14 80.5 52 80.8
Os02g0775200 Oryza sativa ssp. japonica HOM05D001470 ORTHO05D006756 2.1e-13 79.3 52 78.8
Carub.0002s2436 Capsella rubella HOM05D001470 ORTHO05D006756 3.6e-13 78.6 52 78.8
Mapoly0024s0100 Marchantia polymorpha HOM05D001470 ORTHO05D006756 3.6e-13 78.6 52 78.8
SEGI_11240 Sequoiadendron giganteum HOM05D001470 ORTHO05D006756 3.6e-13 78.6 80 58.8
Lj1g0008455 Lotus japonicus HOM05D001470 ORTHO05D006756 4.7e-13 78.2 59 71.2
Zm00001eb256550 Zea mays HOM05D001470 ORTHO05D006756 4.7e-13 78.2 52 76.9
SHI31507 Sapria himalayana HOM05D001470 ORTHO05D006756 8.0e-13 77.4 50 80.0
CBR_g61476 Chara braunii HOM05D001470 ORTHO05D006756 1.2e-11 73.6 81 58.0
FvH4_2g27410 Fragaria vesca HOM05D001470 ORTHO05D006756 3.7e-10 68.6 56 67.9
FAN15G1146 Fragaria x ananassa HOM05D001470 ORTHO05D006756 3.7e-10 68.6 56 67.9
FAN20G1865 Fragaria x ananassa HOM05D001470 ORTHO05D006756 3.7e-10 68.6 56 67.9
FAN24G1004 Fragaria x ananassa HOM05D001470 ORTHO05D006756 3.7e-10 68.6 56 67.9
PRCOL_00000131 Prasinoderma coloniale HOM05D001470 ORTHO05D006756 4.8e-10 68.2 54 70.4
Cre12.g527300 Chlamydomonas reinhardtii HOM05D001470 ORTHO05D006756 6.3e-10 67.8 48 68.8
FAN27G0086 Fragaria x ananassa HOM05D001470 ORTHO05D006756 6.3e-10 67.8 56 66.1
MCO13G571 Micromonas commoda HOM05D001470 ORTHO05D006756 1.2e-08 63.5 49 67.3
Cfa025569 Carpinus fangiana HOM05D001470 ORTHO05D006756 7.7e-08 60.8 54 61.1


User provided reference genes

Program Settings