Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 4.9e-185 651.0 326 100.0
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 3.8e-137 491.9 326 78.2
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 3.8e-137 491.9 326 78.2
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.5e-136 490.0 327 78.3
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 1.6e-135 486.5 328 78.0
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 3.6e-135 485.3 328 77.7
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 4.0e-134 481.9 330 76.7
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 8.8e-134 480.7 326 76.1
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 1.2e-133 480.3 351 74.9
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 1.5e-133 479.9 318 78.0
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 2.0e-133 479.6 332 75.6
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 2.0e-133 479.6 317 78.2
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 2.6e-133 479.2 321 76.9
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 9.7e-133 477.2 334 75.4
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 1.7e-132 476.5 330 75.5
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 1.7e-132 476.5 344 73.0
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 2.2e-132 476.1 339 74.0
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.2e-132 476.1 334 76.3
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 2.8e-132 475.7 316 77.5
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 6.3e-132 474.6 338 75.1
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 6.3e-132 474.6 330 75.5
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.1e-131 473.8 330 75.5
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 1.8e-131 473.0 343 72.9
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 2.4e-131 472.6 334 75.4
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 3.1e-131 472.2 341 73.6
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 1.2e-130 470.3 316 76.6
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.2e-130 470.3 339 73.2
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 2.7e-130 469.2 317 76.7
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 5.9e-130 468.0 329 75.4
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 5.9e-130 468.0 334 74.6
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 5.9e-130 468.0 339 73.2
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 7.7e-130 467.6 333 74.8
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 7.7e-130 467.6 326 74.2
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.7e-129 466.5 332 73.8
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 3.8e-129 465.3 329 72.9
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 3.8e-129 465.3 336 73.5
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 3.8e-129 465.3 317 77.3
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 6.5e-129 464.5 335 72.5
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.5e-129 464.2 321 75.4
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.1e-128 463.8 316 75.6
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 1.1e-128 463.8 316 75.9
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 1.1e-128 463.8 341 72.1
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 1.9e-128 463.0 316 77.5
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.9e-128 463.0 344 72.1
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 2.5e-128 462.6 326 74.8
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 4.2e-128 461.8 326 74.2
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 4.2e-128 461.8 347 70.3
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 4.2e-128 461.8 317 75.7
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 4.2e-128 461.8 339 72.6
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 7.2e-128 461.1 340 72.4
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 9.4e-128 460.7 347 70.0
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.2e-127 460.3 342 71.9
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 8.0e-127 457.6 326 72.4
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 1.4e-126 456.8 323 73.4
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 2.3e-126 456.1 339 72.9
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 5.2e-126 454.9 327 72.8
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 1.5e-125 453.4 330 73.0
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 2.0e-125 453.0 316 74.1
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 2.0e-125 453.0 316 74.1
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 2.6e-125 452.6 345 70.7
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 9.8e-125 450.7 346 70.2
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 9.8e-125 450.7 324 72.2
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 1.3e-124 450.3 325 72.3
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 1.3e-124 450.3 340 70.0
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 1.7e-124 449.9 310 75.2
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 3.7e-124 448.7 317 73.5
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 3.7e-124 448.7 331 71.3
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 6.3e-124 448.0 347 68.0
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 8.3e-124 447.6 324 72.2
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 4.1e-123 445.3 327 72.5
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 5.4e-123 444.9 317 73.5
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 7.0e-123 444.5 317 73.5
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 9.1e-123 444.1 330 71.2
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 3.5e-122 442.2 333 70.6
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.3e-121 440.3 339 69.9
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 3.8e-121 438.7 336 68.2
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.5e-120 436.8 336 68.8
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 2.5e-120 436.0 333 68.5
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 7.2e-120 434.5 295 76.9
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 1.2e-119 433.7 342 69.0
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 2.1e-119 433.0 326 68.7
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 3.6e-119 432.2 316 69.9
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 4.7e-119 431.8 328 70.4
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 2.3e-118 429.5 345 67.2
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.3e-118 429.5 327 68.5
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 6.8e-118 427.9 335 67.2
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 2.6e-117 426.0 335 69.3
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 3.4e-117 425.6 334 71.3
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 4.4e-117 425.2 334 67.1
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 4.4e-117 425.2 334 67.1
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 7.5e-117 424.5 325 70.5
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 7.5e-117 424.5 338 69.5
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 9.8e-117 424.1 363 63.6
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 1.3e-116 423.7 335 67.2
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 2.2e-116 422.9 326 70.9
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.8e-116 422.5 323 67.2
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 1.8e-115 419.9 316 68.7
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 4.1e-115 418.7 316 69.3
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 4.5e-114 415.2 352 63.9
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 6.6e-113 411.4 337 66.2
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 6.6e-113 411.4 337 66.2
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 9.5e-112 407.5 317 65.3
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 2.3e-110 402.9 325 64.0
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.4e-109 398.7 321 64.8
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 1.7e-108 396.7 321 64.2
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 8.3e-108 394.4 319 64.3
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 5.6e-104 381.7 276 72.8
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 3.4e-101 372.5 265 73.6
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 6.4e-100 368.2 319 63.9
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.0e-99 364.8 307 62.2
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 3.5e-98 362.5 333 60.7
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 6.0e-98 361.7 300 65.3
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 2.8e-95 352.8 332 60.8
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 4.7e-95 352.1 334 60.5
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.4e-91 340.5 298 62.1
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.7e-90 336.3 241 73.0
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 3.6e-87 325.9 190 86.3
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.0e-86 322.4 292 59.2
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 3.8e-84 315.8 323 53.6
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 4.9e-84 315.5 325 54.5
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 5.4e-83 312.0 181 85.1
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 6.6e-81 305.1 326 53.4
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 1.1e-80 304.3 268 62.7
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 1.9e-80 303.5 229 71.6
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 8.1e-79 298.1 289 57.4
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 9.0e-78 294.7 310 54.5
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 2.9e-76 289.7 181 79.6
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 1.1e-75 287.7 341 49.3
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 9.3e-75 284.6 195 68.7
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 3.1e-70 269.6 246 63.4
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 2.0e-69 266.9 310 49.7
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 4.9e-68 262.3 190 70.5
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.8e-62 243.8 147 82.3
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 3.7e-47 193.0 116 82.8
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.2e-42 177.9 153 64.7
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 6.1e-42 175.6 151 66.9
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 1.5e-40 171.0 152 60.5
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 5.7e-40 169.1 151 63.6
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 2.9e-36 156.8 149 59.7
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.9e-36 156.8 298 34.6
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 1.4e-35 154.5 94 79.8
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 9.4e-35 151.8 156 54.5
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 9.4e-35 151.8 103 77.7
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 7.9e-34 148.7 109 73.4
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 1.5e-29 134.4 107 67.3
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 1.7e-28 131.0 303 29.7
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 3.8e-28 129.8 269 35.3
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 3.2e-27 126.7 186 42.5
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 3.2e-27 126.7 118 61.0
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 4.2e-27 126.3 118 59.3
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 4.2e-27 126.3 118 59.3
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 5.5e-27 125.9 66 89.4
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 7.2e-27 125.6 105 65.7
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 2.1e-26 124.0 118 59.3
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 3.6e-26 123.2 118 59.3
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 3.9e-25 119.8 118 58.5
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 1.1e-24 118.2 118 57.6
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.8e-23 112.8 294 28.6
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 2.6e-21 107.1 155 40.6
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 5.9e-21 105.9 294 28.6
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 7.7e-21 105.5 87 62.1
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 5.0e-20 102.8 155 40.0
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 7.2e-19 99.0 83 63.9
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 7.2e-19 99.0 50 96.0
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 2.2e-15 87.4 53 73.6
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 8.2e-15 85.5 52 80.8


User provided reference genes

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