Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 3.7e-210 734.6 356 100.0
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 4.3e-158 561.6 356 76.1
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.2e-157 560.1 356 75.8
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 3.3e-150 535.4 356 72.5
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 1.4e-140 503.4 356 70.2
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 1.3e-127 460.3 352 64.5
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 3.0e-127 459.1 354 63.6
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 9.0e-124 447.6 351 63.5
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 3.4e-123 445.7 349 64.2
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.7e-122 443.4 348 63.5
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 2.2e-122 443.0 356 62.6
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 2.9e-122 442.6 312 66.0
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 3.8e-122 442.2 358 60.3
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.6e-120 436.8 351 61.8
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.7e-120 436.0 360 59.7
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 2.7e-120 436.0 359 61.8
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 3.5e-120 435.6 322 64.9
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 3.5e-120 435.6 315 64.1
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 1.3e-119 433.7 317 66.9
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.3e-119 433.0 317 66.6
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 3.9e-119 432.2 346 60.4
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 2.5e-118 429.5 317 65.9
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 2.8e-117 426.0 350 62.3
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 3.7e-117 425.6 312 64.4
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 4.8e-117 425.2 354 58.5
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 8.2e-117 424.5 322 63.0
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 1.1e-116 424.1 351 60.4
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 1.8e-116 423.3 350 59.4
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 2.4e-116 422.9 348 60.9
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 3.1e-116 422.5 334 60.8
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 1.2e-115 420.6 362 58.8
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 1.7e-114 416.8 352 58.8
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 3.8e-114 415.6 285 68.1
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 5.0e-114 415.2 362 56.1
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 1.4e-113 413.7 346 60.1
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 2.5e-113 412.9 327 61.2
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 4.2e-113 412.1 352 58.0
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 9.4e-113 411.0 314 61.1
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 1.2e-112 410.6 308 61.0
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.6e-112 410.2 320 61.9
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 1.6e-112 410.2 331 58.0
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 6.1e-112 408.3 321 60.1
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 1.0e-111 407.5 325 59.1
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 5.1e-111 405.2 354 57.1
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 1.1e-108 397.5 355 56.6
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.1e-108 397.5 362 57.5
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 4.1e-108 395.6 315 61.3
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 6.9e-108 394.8 274 67.5
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 1.2e-107 394.0 277 67.1
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 5.9e-107 391.7 274 68.6
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 1.3e-106 390.6 312 61.5
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 1.4e-105 387.1 339 57.2
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 1.9e-105 386.7 333 58.0
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 1.9e-105 386.7 310 60.3
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.2e-104 384.0 335 56.4
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 1.6e-104 383.6 354 52.5
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 1.6e-104 383.6 312 56.4
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 3.6e-104 382.5 306 60.5
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 3.9e-103 379.0 325 58.2
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 1.1e-102 377.5 276 65.2
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 4.4e-102 375.6 316 57.9
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 5.7e-102 375.2 273 65.2
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 2.8e-101 372.9 341 53.1
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 8.2e-101 371.3 351 52.4
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 8.2e-101 371.3 352 51.1
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 8.2e-101 371.3 354 52.3
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 3.1e-100 369.4 371 51.5
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 1.6e-99 367.1 352 51.4
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 1.6e-99 367.1 351 50.7
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 2.0e-99 366.7 278 61.2
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 3.5e-99 365.9 351 49.9
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 7.7e-99 364.8 351 50.1
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 1.0e-98 364.4 351 50.4
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.7e-98 363.6 351 49.6
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 6.5e-98 361.7 338 51.2
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 1.1e-97 360.9 351 50.1
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 2.5e-97 359.8 338 50.9
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 3.2e-97 359.4 338 50.9
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 6.1e-96 355.1 351 49.6
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 6.1e-96 355.1 248 67.3
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 8.0e-96 354.8 275 62.2
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.0e-95 354.4 310 55.5
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 8.8e-95 351.3 344 52.9
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 1.1e-94 350.9 351 53.8
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.4e-94 349.0 348 53.7
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 4.8e-93 345.5 272 59.2
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 5.2e-87 325.5 310 52.9
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 3.4e-86 322.8 318 49.4
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 7.5e-86 321.6 250 63.2
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 9.8e-86 321.2 314 49.4
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 3.7e-85 319.3 352 46.6
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 1.5e-81 307.4 336 48.5
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.6e-80 303.9 215 66.0
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 6.1e-80 302.0 248 60.9
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 1.5e-78 297.4 308 52.3
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 3.1e-76 289.7 589 33.3
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 1.2e-75 287.7 353 44.2
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.0e-75 287.0 358 47.5
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.7e-75 286.6 221 61.1
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 4.5e-75 285.8 304 45.1
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 1.7e-74 283.9 215 60.5
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 8.6e-74 281.6 303 44.2
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.0e-71 274.6 166 81.3
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 4.0e-71 272.7 192 67.7
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 2.0e-70 270.4 338 41.4
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 1.8e-68 263.8 310 41.9
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 5.8e-62 242.3 195 61.0
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 2.4e-60 236.9 179 60.9
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 4.1e-60 236.1 178 61.2
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 1.7e-58 230.7 271 48.0
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 4.3e-57 226.1 270 46.3
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 2.4e-52 210.3 182 59.9
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 7.8e-51 205.3 272 43.8
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.5e-49 201.1 173 56.1
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 3.0e-42 176.8 256 41.4
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 1.6e-40 171.0 79 98.7
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 5.2e-39 166.0 220 43.2
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 1.2e-38 164.9 241 34.0
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 1.7e-37 161.0 313 33.2
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 2.9e-37 160.2 149 53.0
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 3.8e-37 159.8 140 54.3
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 4.9e-37 159.5 173 48.0
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 2.7e-35 153.7 110 70.9
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 8.7e-34 148.7 128 57.0
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 2.5e-33 147.1 142 55.6
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 1.2e-27 128.3 152 46.1
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 8.1e-24 115.5 127 49.6
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 5.3e-23 112.8 125 49.6
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 6.9e-23 112.5 221 37.6
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.9e-21 107.1 64 75.0
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.2e-14 85.1 101 41.6
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 7.1e-12 75.9 96 46.9
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.6e-11 74.7 110 40.0


User provided reference genes

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