Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 0.0e+00 1481.1 726 100.0
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1169.5 728 80.8
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 0.0e+00 1158.7 728 80.1
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 0.0e+00 1152.9 729 79.1
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 0.0e+00 1142.9 729 77.5
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 0.0e+00 1107.0 721 76.1
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 0.0e+00 1101.3 728 75.0
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 0.0e+00 1095.5 730 73.7
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 0.0e+00 1094.7 729 74.6
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1093.2 730 73.7
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 0.0e+00 1091.3 730 73.4
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 0.0e+00 1087.8 727 74.1
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 0.0e+00 1087.0 730 73.2
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 0.0e+00 1084.3 729 73.5
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 0.0e+00 1083.9 730 72.9
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 0.0e+00 1082.4 730 72.7
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1080.1 724 73.5
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 0.0e+00 1077.0 723 73.4
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 0.0e+00 1075.8 730 73.4
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 2.0e-311 1072.0 733 71.5
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 9.9e-311 1069.7 729 72.6
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 3.8e-310 1067.8 731 72.2
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 1.1e-309 1066.2 734 71.0
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 7.1e-309 1063.5 728 72.7
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 1.3e-307 1059.3 729 71.9
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 3.0e-307 1058.1 732 71.2
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 3.9e-307 1057.7 734 70.6
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 5.1e-307 1057.4 732 71.4
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 6.6e-307 1057.0 727 71.7
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 8.7e-307 1056.6 734 71.5
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.1e-306 1056.2 731 71.4
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 1.5e-306 1055.8 724 71.7
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.9e-306 1055.4 729 70.9
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.9e-306 1055.4 734 71.1
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 2.5e-306 1055.0 728 73.2
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 2.5e-306 1055.0 731 71.7
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 4.3e-306 1054.3 731 71.1
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 6.2e-305 1050.4 728 72.7
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 2.4e-304 1048.5 715 72.7
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 2.4e-304 1048.5 729 71.2
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 5.3e-304 1047.3 727 71.0
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 9.0e-304 1046.6 733 70.5
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 1.5e-303 1045.8 722 72.2
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 2.9e-302 1041.6 728 70.7
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 2.9e-302 1041.6 724 71.5
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 2.4e-301 1038.5 719 72.3
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 2.7e-300 1035.0 805 66.2
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 7.9e-300 1033.5 733 69.7
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 1.3e-299 1032.7 717 71.1
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 3.0e-299 1031.6 720 70.6
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 1.3e-297 1026.2 721 70.0
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 8.1e-297 1023.5 717 73.8
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 1.1e-296 1023.1 731 69.8
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 1.8e-296 1022.3 730 69.7
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 6.9e-296 1020.4 721 70.2
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 1.2e-295 1019.6 725 69.5
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 2.6e-295 1018.5 729 70.0
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 7.6e-295 1016.9 732 69.5
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 1.3e-294 1016.1 769 67.4
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 1.7e-294 1015.8 721 69.3
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 6.4e-294 1013.8 720 69.7
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 2.4e-293 1011.9 741 68.3
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 1.1e-290 1003.0 727 68.6
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.9e-290 1002.3 727 68.1
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 2.5e-290 1001.9 725 69.4
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 1.4e-288 996.1 728 67.2
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 1.4e-288 996.1 728 67.4
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 1.2e-287 993.0 686 72.0
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 1.7e-286 989.2 750 66.8
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 9.6e-282 973.4 708 68.6
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 1.3e-281 973.0 714 66.2
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 1.6e-281 972.6 721 66.3
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 2.8e-281 971.8 721 66.2
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 8.2e-281 970.3 724 66.4
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 4.1e-280 968.0 723 65.7
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 6.9e-280 967.2 731 65.4
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 6.9e-280 967.2 729 65.4
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 6.9e-280 967.2 726 64.7
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 6.5e-278 960.7 727 65.3
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 1.4e-277 959.5 796 60.7
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 1.2e-276 956.4 722 65.5
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 1.0e-275 953.4 728 65.1
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 3.3e-274 948.3 725 66.8
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 3.7e-273 944.9 722 65.2
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 4.8e-273 944.5 783 62.3
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 1.2e-271 939.9 725 64.3
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 3.9e-267 924.9 731 64.6
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 3.9e-267 924.9 719 65.9
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 3.7e-265 918.3 720 64.6
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 2.9e-262 908.7 734 63.4
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 3.9e-259 898.3 579 76.7
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 1.5e-258 896.3 602 73.1
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 2.1e-252 875.9 611 71.0
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 3.1e-248 862.1 698 61.9
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 1.0e-243 847.0 727 60.4
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 8.8e-243 844.0 731 59.1
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 2.4e-232 809.3 565 71.9
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 7.5e-226 787.7 759 57.4
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 2.2e-217 759.6 538 70.6
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 5.2e-211 738.4 718 53.1
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 9.2e-200 701.0 711 50.8
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 2.7e-183 646.4 716 47.9
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 2.4e-176 623.2 891 41.2
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 6.7e-174 615.1 468 65.8
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 4.3e-165 585.9 705 46.0
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 9.6e-165 584.7 858 40.1
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 6.3e-148 528.9 511 53.4
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 2.4e-147 526.9 403 66.0
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 5.2e-142 509.2 748 41.6
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 5.3e-139 499.2 747 40.4
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 4.5e-138 496.1 333 77.2
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 1.0e-126 458.4 819 37.1
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 7.7e-122 442.2 764 37.8
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 3.2e-120 436.8 738 37.3
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.8e-115 421.0 280 75.0
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 8.0e-111 405.6 360 58.9
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 3.6e-79 300.4 270 57.0
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.6e-74 285.0 201 69.2
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 9.9e-69 265.8 196 67.3
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 3.5e-58 230.7 164 68.3
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 8.7e-57 226.1 155 72.3
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 7.9e-42 176.4 112 75.9
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 2.8e-39 167.9 102 79.4
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 7.2e-35 153.3 201 48.3
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 2.4e-30 138.3 116 56.9
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 2.6e-29 134.8 96 65.6
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 1.7e-23 115.5 61 85.2
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 9.1e-22 109.8 148 45.9
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 3.0e-17 94.7 60 71.7
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 1.8e-14 85.5 57 68.4
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 2.4e-14 85.1 118 45.8
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 2.2e-12 78.6 45 77.8
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 6.5e-12 77.0 62 58.1
RcHm_v2.0_Chr2g0132441 Rosa chinensis HOM05D005873 ORTHO05D007582 3.7e-07 61.2 39 69.2
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 1.8e-06 58.9 47 53.2


User provided reference genes

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