Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0143500 Rhododendron simsii HOM05D003438 ORTHO05D004235 0.0e+00 2121.7 1058 100.0
Rhsim09G0118400 Rhododendron simsii HOM05D003438 ORTHO05D004235 0.0e+00 1478.8 1037 77.5
vmacro10455 Vaccinium macrocarpon HOM05D003438 ORTHO05D004235 0.0e+00 1459.5 1049 74.4
Dinv16582 Davidia involucrata HOM05D003438 ORTHO05D004235 0.0e+00 1175.2 1045 61.1
Hma1.2p1_0762F.1_g214440 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 0.0e+00 1109.7 1043 57.6
MD16G1052600 Malus domestica HOM05D003438 ORTHO05D004235 3.9e-308 1061.6 1053 53.7
TAR629G1044 Trochodendron aralioides HOM05D003438 ORTHO05D004235 9.7e-307 1057.0 1054 54.7
Cfa008813 Carpinus fangiana HOM05D003438 ORTHO05D004235 1.1e-299 1033.5 1052 53.4
Haze_11830 Corylus avellana HOM05D003438 ORTHO05D004235 3.1e-297 1025.4 1045 53.6
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 4.1e-297 1025.0 1049 54.3
Duzib251G0072 Durio zibethinus HOM05D003438 ORTHO05D004235 1.5e-296 1023.1 1044 52.5
Thecc.02G318900 Theobroma cacao HOM05D003438 ORTHO05D004235 1.5e-296 1023.1 1046 52.8
Prupe.1G298000 Prunus persica HOM05D003438 ORTHO05D004235 3.8e-295 1018.5 1045 52.5
DCAR_023734 Daucus carota HOM05D003438 ORTHO05D004235 7.4e-291 1004.2 1031 52.7
Potri.010G135500 Populus trichocarpa HOM05D003438 ORTHO05D004235 2.4e-289 999.2 1045 52.6
Sabra10G0104100 Salix brachista HOM05D003438 ORTHO05D004235 1.3e-287 993.4 1056 51.4
Hma1.2p1_0762F.1_g214450 Hydrangea macrophylla HOM05D003438 ORTHO05D004235 7.2e-286 987.6 944 56.5
TWI75G0189 Tripterygium wilfordii HOM05D003438 ORTHO05D004235 9.4e-286 987.3 1135 49.2
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 1.2e-285 986.9 1051 51.9
FvH4_4g28800 Fragaria vesca HOM05D003438 ORTHO05D004235 1.3e-282 976.9 1050 50.1
FAN17G0827 Fragaria x ananassa HOM05D003438 ORTHO05D004235 2.2e-282 976.1 1071 50.1
Gohir.A03G107400 Gossypium hirsutum HOM05D003438 ORTHO05D004235 2.2e-282 976.1 1063 50.9
FAN07G2974 Fragaria x ananassa HOM05D003438 ORTHO05D004235 4.8e-282 974.9 1070 49.8
Ciclev10030492m.g Citrus clementina HOM05D003438 ORTHO05D004235 1.4e-281 973.4 1049 50.4
FAN12G2600 Fragaria x ananassa HOM05D003438 ORTHO05D004235 1.4e-281 973.4 1075 49.8
Gorai.005G148400 Gossypium raimondii HOM05D003438 ORTHO05D004235 1.4e-281 973.4 1062 50.5
Cc11_g11300 Coffea canephora HOM05D003438 ORTHO05D004235 5.3e-281 971.5 1046 51.3
Sed0018972 Sechium edule HOM05D003438 ORTHO05D004235 1.0e-279 967.2 1047 50.0
Nitab4.5_0000149g0230 Nicotiana tabacum HOM05D003438 ORTHO05D004235 1.7e-279 966.5 1047 51.6
MSTRG.795 Avicennia marina HOM05D003438 ORTHO05D004235 1.2e-277 960.3 1047 50.0
Glyma.15G276800 Glycine max HOM05D003438 ORTHO05D004235 2.3e-276 956.1 1053 50.0
Atru.chr11.1518 Acer truncatum HOM05D003438 ORTHO05D004235 5.7e-275 951.4 1042 50.7
HanXRQChr16g0528311 Helianthus annuus HOM05D003438 ORTHO05D004235 2.2e-274 949.5 1049 49.8
Lj4g0011234 Lotus japonicus HOM05D003438 ORTHO05D004235 1.8e-273 946.4 1047 49.9
MELO3C012178.2 Cucumis melo HOM05D003438 ORTHO05D004235 9.1e-273 944.1 1053 48.9
Medtr8g069840 Medicago truncatula HOM05D003438 ORTHO05D004235 7.7e-272 941.0 1050 49.4
Nn4g23588 Nelumbo nucifera HOM05D003438 ORTHO05D004235 5.0e-271 938.3 1051 50.1
CAN.G263.2 Capsicum annuum HOM05D003438 ORTHO05D004235 3.2e-270 935.6 1050 49.9
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 4.2e-270 935.3 1053 50.0
Sopen04g001190 Solanum pennellii HOM05D003438 ORTHO05D004235 5.5e-270 934.9 1048 50.2
THA.LOC104821983 Tarenaya hassleriana HOM05D003438 ORTHO05D004235 1.2e-269 933.7 1051 49.4
Lalb_Chr16g0392021 Lupinus albus HOM05D003438 ORTHO05D004235 2.1e-269 932.9 1056 49.6
Nitab4.5_0000591g0100 Nicotiana tabacum HOM05D003438 ORTHO05D004235 3.6e-269 932.2 1075 49.1
arahy.Tifrunner.gnm1.ann1.KJ79M0 Arachis hypogaea HOM05D003438 ORTHO05D004235 2.0e-267 926.4 1049 49.9
Sc04g0007220 Simmondsia chinensis HOM05D003438 ORTHO05D004235 2.0e-267 926.4 1045 49.6
Migut.L01140 Erythranthe guttata HOM05D003438 ORTHO05D004235 5.7e-267 924.9 1049 48.5
arahy.Tifrunner.gnm1.ann1.2XHE7W Arachis hypogaea HOM05D003438 ORTHO05D004235 1.3e-266 923.7 1049 49.8
PSO017G4740 Papaver somniferum HOM05D003438 ORTHO05D004235 1.7e-266 923.3 1059 48.3
ClCG05G023390 Citrullus lanatus HOM05D003438 ORTHO05D004235 8.3e-266 921.0 1037 48.2
CANSAT64G0670 Cannabis sativa HOM05D003438 ORTHO05D004235 1.1e-265 920.6 1049 47.5
AT1G68890 Arabidopsis thaliana HOM05D003438 ORTHO05D004235 2.7e-264 916.0 1045 48.7
ECA234G3211 Erigeron canadensis HOM05D003438 ORTHO05D004235 5.9e-264 914.8 1108 47.4
Ah.12g061010 Amaranthus hybridus HOM05D003438 ORTHO05D004235 2.9e-263 912.5 1043 47.4
Thhalv10017999m.g Eutrema salsugineum HOM05D003438 ORTHO05D004235 1.1e-262 910.6 1050 48.8
PGR119G1138 Punica granatum HOM05D003438 ORTHO05D004235 3.3e-262 909.1 1045 48.3
BraA02t06607Z Brassica rapa HOM05D003438 ORTHO05D004235 4.2e-262 908.7 1050 48.5
CARHR061750 Cardamine hirsuta HOM05D003438 ORTHO05D004235 4.2e-262 908.7 1050 48.7
A02p15460 Brassica napus HOM05D003438 ORTHO05D004235 7.2e-262 907.9 1045 48.3
EL10Ac6g14628 Beta vulgaris HOM05D003438 ORTHO05D004235 9.5e-262 907.5 1046 47.3
COL.COLO4_27762 Corchorus olitorius HOM05D003438 ORTHO05D004235 1.2e-261 907.1 1018 49.4
BolC2t08622H Brassica oleracea HOM05D003438 ORTHO05D004235 6.1e-261 904.8 1051 48.6
BcaB05g24430 Brassica carinata HOM05D003438 ORTHO05D004235 8.0e-261 904.4 1051 48.9
CsaV3_5G033620 Cucumis sativus L. HOM05D003438 ORTHO05D004235 3.0e-260 902.5 1086 46.5
Sp5g24020 Schrenkiella parvula HOM05D003438 ORTHO05D004235 1.4e-257 893.6 1050 48.0
Eucgr.G02402 Eucalyptus grandis HOM05D003438 ORTHO05D004235 1.8e-257 893.3 1047 47.3
Manes.14G092500 Manihot esculenta HOM05D003438 ORTHO05D004235 9.2e-257 891.0 1029 49.6
C02p25570 Brassica napus HOM05D003438 ORTHO05D004235 2.0e-256 889.8 1052 48.4
SalBow8G3833 Salvia bowleyana HOM05D003438 ORTHO05D004235 1.7e-255 886.7 1071 46.2
Aa31sc12G150 Aethionema arabicum HOM05D003438 ORTHO05D004235 1.9e-254 883.2 1046 47.6
MBI14_g11750_MAGBIO Magnolia biondii HOM05D003438 ORTHO05D004235 2.3e-252 876.3 1070 47.5
Lsat_1_v5_gn_4_21341 Lactuca sativa HOM05D003438 ORTHO05D004235 5.0e-247 858.6 1015 48.0
CDE02G1987 Ceratophyllum demersum HOM05D003438 ORTHO05D004235 6.2e-245 851.7 1056 45.5
PSO478G2917 Papaver somniferum HOM05D003438 ORTHO05D004235 8.9e-244 847.8 994 48.0
ATR0691G173 Amborella trichopoda HOM05D003438 ORTHO05D004235 7.5e-243 844.7 1051 45.8
SGA_v2.0_scaffold16G07841 Striga asiatica HOM05D003438 ORTHO05D004235 7.1e-241 838.2 1023 46.6
Hund25139 Selenicereus undatus HOM05D003438 ORTHO05D004235 2.8e-237 826.2 1034 45.5
AUR62007840 Chenopodium quinoa HOM05D003438 ORTHO05D004235 3.6e-237 825.9 1011 46.2
GSVIVG01010139001 Vitis vinifera HOM05D003438 ORTHO05D004235 4.3e-230 802.4 817 54.6
Peaxi162Scf00396g01321 Petunia axillaris HOM05D003438 ORTHO05D004235 9.6e-230 801.2 828 52.2
Solyc04g005190.2 Solanum lycopersicum HOM05D003438 ORTHO05D004235 1.2e-224 784.3 830 51.8
QL03p047145 Quercus lobata HOM05D003438 ORTHO05D004235 2.4e-217 760.0 787 52.1
Carub.0002s1552 Capsella rubella HOM05D003438 ORTHO05D004235 2.3e-215 753.4 859 48.9
HPP92_019404 Vanilla planifolia HOM05D003438 ORTHO05D004235 8.1e-205 718.4 993 42.6
SEGI_27375 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 4.9e-202 709.1 1051 40.3
Cc11_g11330 Coffea canephora HOM05D003438 ORTHO05D004235 1.8e-196 690.6 840 46.9
AUR62003034 Chenopodium quinoa HOM05D003438 ORTHO05D004235 1.7e-194 684.1 994 41.5
RcHm_v2.0_Chr4g0436941 Rosa chinensis HOM05D003438 ORTHO05D004235 1.4e-193 681.0 753 49.0
Dinv16579 Davidia involucrata HOM05D003438 ORTHO05D004235 1.8e-191 674.1 664 57.5
Phvul.005G022900 Phaseolus vulgaris HOM05D003438 ORTHO05D004235 1.4e-188 664.5 738 48.6
Oeu027415.2 Olea europaea HOM05D003438 ORTHO05D004235 6.9e-188 662.1 787 48.3
Gohir.D02G132466 Gossypium hirsutum HOM05D003438 ORTHO05D004235 7.9e-176 622.1 843 42.9
unitig_699.g19901 Utricularia gibba HOM05D003438 ORTHO05D004235 8.2e-173 612.1 991 38.6
Psat4g113520 Pisum sativum HOM05D003438 ORTHO05D004235 5.3e-172 609.4 757 46.4
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 2.4e-164 583.9 1066 36.6
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 4.1e-164 583.2 1069 35.6
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 9.8e-158 562.0 1086 36.4
VMungo1080G0632 Vigna mungo HOM05D003438 ORTHO05D004235 5.2e-151 539.7 572 51.9
SMO270G0066 Selaginella moellendorffii HOM05D003438 ORTHO05D004235 4.9e-149 533.1 1052 36.0
CSS0002113 Camellia sinensis var. sinensis HOM05D003438 ORTHO05D004235 4.1e-132 476.9 368 69.8
Actinidia30181 Actinidia chinensis HOM05D003438 ORTHO05D004235 4.3e-129 466.8 373 66.2
VMungo1080G0040 Vigna mungo HOM05D003438 ORTHO05D000002 4.4e-110 403.7 473 46.7
Psat7g028040 Pisum sativum HOM05D003438 ORTHO05D004235 8.1e-104 382.9 404 50.2
CSS0014289 Camellia sinensis var. sinensis HOM05D003438 ORTHO05D004235 6.9e-103 379.8 334 63.2
Ca_22508_v3 Cicer arietinum L. HOM05D003438 ORTHO05D004235 2.6e-102 377.9 383 52.2
Zm00001eb245370 Zea mays HOM05D003438 ORTHO05D004235 3.8e-101 374.0 513 41.1
Actinidia07752 Actinidia chinensis HOM05D003438 ORTHO05D004235 9.9e-94 349.4 425 49.4
CSS0041395 Camellia sinensis var. sinensis HOM05D003438 ORTHO05D004235 1.1e-92 345.9 262 66.0
Psat4g082840 Pisum sativum HOM05D003438 ORTHO05D004235 3.9e-82 310.8 310 53.9
Zm00001eb245360 Zea mays HOM05D003438 ORTHO05D004235 8.7e-82 309.7 395 42.5
RcHm_v2.0_Chr4g0436931 Rosa chinensis HOM05D003438 ORTHO05D004235 4.5e-78 297.4 284 53.2
GSVIVG01010141001 Vitis vinifera HOM05D003438 ORTHO05D004235 9.3e-76 289.7 263 58.9
CBR_g48055 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-70 272.7 676 30.9
Cc11_g11320 Coffea canephora HOM05D003438 ORTHO05D004235 3.8e-69 267.7 266 50.8
Actinidia30182 Actinidia chinensis HOM05D003438 ORTHO05D004235 3.7e-64 251.1 163 75.5
PRCOL_00004179 Prasinoderma coloniale HOM05D003438 ORTHO05D004235 1.8e-63 248.8 1170 26.2
SEGI_33974 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 2.6e-62 245.0 385 38.2
MCO05G676 Micromonas commoda HOM05D003438 ORTHO05D004235 1.9e-60 238.8 1231 24.8
Psat4g113480 Pisum sativum HOM05D003438 ORTHO05D004235 3.0e-58 231.5 263 48.3
Ca_22509_v3 Cicer arietinum L. HOM05D003438 ORTHO05D004235 4.1e-55 221.1 317 44.2
Psat2g052880 Pisum sativum HOM05D003438 ORTHO05D004235 5.5e-52 210.7 237 48.5
Cre16.g659050 Chlamydomonas reinhardtii HOM05D003438 ORTHO05D004235 8.2e-48 196.8 1439 22.4
Psat2g033000 Pisum sativum HOM05D003438 ORTHO05D004235 2.2e-45 188.7 161 55.9
PGSC0003DMG400001917 Solanum tuberosum HOM05D003438 ORTHO05D004235 4.7e-43 181.0 182 51.1
Peaxi162Scf00396g01316 Petunia axillaris HOM05D003438 ORTHO05D004235 1.8e-42 179.1 182 50.5
QL03p047161 Quercus lobata HOM05D003438 ORTHO05D000004 2.3e-42 178.7 206 47.1
Glyma.17G262200 Glycine max HOM05D003438 ORTHO05D004235 1.2e-41 176.4 169 52.7
MD13G1054300 Malus domestica HOM05D003438 ORTHO05D004235 7.7e-38 163.7 195 45.6
SEGI_34733 Sequoiadendron giganteum HOM05D003438 ORTHO05D004235 3.8e-37 161.4 164 48.2
HPP92_019426 Vanilla planifolia HOM05D003438 ORTHO05D004235 1.9e-36 159.1 143 51.7
HPP92_019427 Vanilla planifolia HOM05D003438 ORTHO05D004235 4.2e-36 157.9 143 51.0
Cpa.g.sc53.1 Carica papaya HOM05D003438 ORTHO05D004235 5.5e-36 157.5 160 50.0
Os02g0581500 Oryza sativa ssp. japonica HOM05D003438 ORTHO05D004235 3.4e-33 148.3 183 43.2
Solyc04g005200.4 Solanum lycopersicum HOM05D003438 ORTHO05D004235 2.2e-32 145.6 160 47.5
FAN22G1421 Fragaria x ananassa HOM05D003438 ORTHO05D012326 6.3e-32 144.1 170 47.1
Psat0s4200g0080 Pisum sativum HOM05D002807 ORTHO05D004235 2.1e-27 129.0 115 57.4
Psat2g052840 Pisum sativum HOM05D003438 ORTHO05D004235 1.3e-24 119.8 149 49.0
Ca_22511_v3 Cicer arietinum L. HOM05D003438 ORTHO05D004235 2.2e-24 119.0 236 37.3
Psat0s5438g0040 Pisum sativum HOM05D003438 ORTHO05D014892 4.9e-24 117.9 188 36.7
Psat7g103520 Pisum sativum HOM05D003438 ORTHO05D014892 1.2e-22 113.2 144 43.8
Carub.0002s1551 Capsella rubella HOM05D003438 ORTHO05D004235 1.9e-20 105.9 103 59.2
QL03p047172 Quercus lobata HOM05D003438 ORTHO05D004235 1.6e-19 102.8 76 63.2
Psat6g122800 Pisum sativum HOM05D002960 ORTHO05D014892 3.1e-18 98.6 85 60.0
Gohir.A13G089245 Gossypium hirsutum HOM05D003438 ORTHO05D004235 5.2e-18 97.8 87 52.9
Psat2g135600 Pisum sativum HOM05D003438 ORTHO05D004235 1.2e-17 96.7 84 57.1
Actinidia07743 Actinidia chinensis HOM05D003438 ORTHO05D004235 2.0e-14 85.9 84 60.7
Nitab4.5_0002491g0050 Nicotiana tabacum HOM05D003438 ORTHO05D004235 3.5e-14 85.1 133 40.6
Cfa008818 Carpinus fangiana HOM05D003438 ORTHO05D004235 1.0e-13 83.6 80 50.0
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 2.5e-12 79.0 73 56.2
Psat1g137120 Pisum sativum HOM05D003438 ORTHO05D014892 2.5e-12 79.0 73 56.2
CBR_g48056 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-11 75.5 306 24.2
Glyma.01G000100 Glycine max HOM05D003438 ORTHO05D004235 4.9e-08 64.7 111 37.8
MBI04_g26975_MAGBIO Magnolia biondii HOM05D003438 ORTHO05D014892 1.2e-06 60.1 48 52.1


User provided reference genes

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