Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 5.0e-219 764.2 409 100.0
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 2.3e-155 552.7 457 71.1
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.9e-138 496.5 427 71.0
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 1.1e-136 490.7 435 70.6
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 6.9e-136 488.0 431 69.1
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 2.8e-113 412.9 417 62.6
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 2.3e-107 393.3 452 56.9
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 1.9e-101 373.6 441 58.3
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 5.5e-101 372.1 450 56.2
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 1.6e-100 370.5 458 53.1
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 1.2e-98 364.4 428 56.1
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 2.6e-98 363.2 489 54.0
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 4.4e-98 362.5 437 56.8
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 5.7e-98 362.1 423 58.9
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 7.5e-98 361.7 413 58.4
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 7.5e-98 361.7 428 56.3
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 1.7e-97 360.5 439 57.6
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 2.2e-97 360.1 438 55.7
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 1.1e-96 357.8 432 55.3
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 1.4e-96 357.5 480 50.8
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 2.4e-96 356.7 481 51.1
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 3.1e-96 356.3 473 53.5
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 4.1e-96 355.9 410 57.3
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 2.7e-95 353.2 414 58.2
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 3.5e-95 352.8 486 51.2
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 4.5e-95 352.4 435 53.6
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 4.5e-95 352.4 420 56.7
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 8.6e-94 348.2 445 54.8
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 3.3e-93 346.3 425 55.3
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 5.5e-93 345.5 427 56.4
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 9.5e-93 344.7 443 53.5
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 2.8e-92 343.2 427 56.2
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 3.6e-92 342.8 502 49.6
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 3.6e-92 342.8 461 53.4
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 4.7e-92 342.4 430 55.3
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 1.8e-91 340.5 421 55.3
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 2.3e-91 340.1 423 54.4
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 2.3e-91 340.1 423 54.4
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 3.4e-90 336.3 432 53.7
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 4.4e-90 335.9 410 54.9
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 5.7e-90 335.5 471 51.6
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 2.2e-89 333.6 423 54.6
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 2.2e-89 333.6 545 46.8
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 4.9e-89 332.4 413 53.0
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 8.3e-89 331.6 432 55.6
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 1.4e-88 330.9 555 45.9
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 1.4e-88 330.9 469 49.7
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.4e-88 330.9 462 51.5
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 1.4e-88 330.9 462 51.5
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 7.0e-88 328.6 416 55.5
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 1.2e-87 327.8 579 45.3
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 1.6e-87 327.4 441 52.2
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 1.1e-85 321.2 409 53.5
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 3.3e-85 319.7 506 44.9
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 3.3e-85 319.7 466 49.8
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 1.6e-84 317.4 462 49.8
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 2.8e-84 316.6 509 45.6
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 3.6e-84 316.2 444 50.5
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 3.6e-84 316.2 462 49.6
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 8.0e-84 315.1 444 50.2
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 8.0e-84 315.1 569 45.5
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.3e-83 313.5 443 49.9
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 8.9e-83 311.6 452 49.6
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 8.9e-83 311.6 452 49.8
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 9.8e-82 308.1 449 49.4
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 1.3e-81 307.8 435 52.2
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 1.7e-81 307.4 460 48.7
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 1.7e-81 307.4 461 48.4
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 1.4e-80 304.3 489 46.4
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 2.4e-80 303.5 525 44.4
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 3.2e-80 303.1 424 51.2
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 1.6e-79 300.8 469 47.3
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 2.7e-79 300.1 540 43.3
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 6.0e-79 298.9 611 40.9
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 1.0e-78 298.1 439 48.7
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 1.1e-77 294.7 422 49.8
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 3.3e-77 293.1 570 41.6
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 9.5e-77 291.6 477 46.1
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 4.7e-76 289.3 494 45.1
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 1.1e-75 288.1 505 42.8
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 3.1e-75 286.6 497 45.1
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.1e-75 286.6 586 40.6
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 4.0e-75 286.2 532 43.0
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 8.9e-75 285.0 412 49.3
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.6e-74 283.5 605 39.5
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 4.4e-74 282.7 509 43.6
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 3.7e-73 279.6 548 41.4
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 4.9e-73 279.3 542 40.8
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 2.4e-72 276.9 633 38.7
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 7.1e-72 275.4 509 42.6
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.1e-71 273.9 625 37.8
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 1.0e-70 271.6 625 37.4
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 1.0e-70 271.6 625 37.1
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 1.7e-70 270.8 474 44.5
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 3.1e-67 260.0 167 81.4
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 7.6e-66 255.4 544 41.0
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 1.4e-64 251.1 532 40.0
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 3.9e-62 243.0 244 61.1
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 1.1e-61 241.5 520 38.7
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 5.6e-61 239.2 625 35.5
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 2.0e-58 230.7 425 45.2
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 8.4e-57 225.3 413 41.6
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 1.5e-53 214.5 230 58.3
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 9.3e-48 195.3 678 31.9
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 1.5e-42 177.9 506 33.8
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 2.9e-41 173.7 349 42.4
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 1.2e-39 168.3 345 41.7
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.3e-38 164.9 379 35.6
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 3.3e-37 160.2 324 43.5
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 4.3e-37 159.8 162 60.5
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 1.3e-36 158.3 106 83.0
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 1.6e-36 157.9 175 55.4
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 2.1e-36 157.5 94 87.2
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 4.0e-35 153.3 94 85.1
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 4.9e-33 146.4 81 92.6
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 1.1e-32 145.2 149 55.0
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 6.0e-31 139.4 363 35.5
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 1.3e-28 131.7 125 61.6
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 5.3e-27 126.3 219 47.0
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 9.0e-27 125.6 224 48.2
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 2.2e-25 120.9 107 60.7
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 4.6e-23 113.2 106 61.3
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 1.5e-21 108.2 174 38.5
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 4.3e-21 106.7 379 31.9
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 1.6e-20 104.8 92 68.5
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 6.3e-20 102.8 154 46.1
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.4e-19 100.9 63 82.5
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 6.5e-17 92.8 61 82.0
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 2.5e-16 90.9 53 84.9
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 3.9e-14 83.6 214 32.2
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 8.8e-14 82.4 362 30.1
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.5e-13 81.6 95 46.3
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.4e-11 74.3 101 43.6
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.5e-10 71.6 95 41.1
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 3.6e-07 60.5 215 27.4
Potri.016G000501 Populus trichocarpa HOM05D005328 ORTHO05D006049 7.9e-07 59.3 62 64.5
CiPaw.09G114000 Carya illinoinensis HOM05D005328 ORTHO05D006049 2.3e-06 57.8 60 61.7
CiPaw.09G114200 Carya illinoinensis HOM05D005328 ORTHO05D006049 2.3e-06 57.8 60 61.7


User provided reference genes

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