Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim12G0078300 Rhododendron simsii HOM05D004755 ORTHO05D006137 1.1e-159 566.6 284 100.0
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 3.2e-31 139.8 106 71.7
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 1.6e-30 137.5 104 71.2
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 1.5e-28 131.0 150 50.7
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 2.5e-28 130.2 106 67.0
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 2.5e-28 130.2 137 54.7
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 2.5e-28 130.2 137 54.7
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 5.7e-28 129.0 106 64.2
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 1.3e-27 127.9 127 55.9
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 1.3e-27 127.9 127 55.9
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 2.2e-27 127.1 135 52.6
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 2.8e-27 126.7 106 63.2
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 3.7e-27 126.3 106 64.2
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 6.3e-27 125.6 106 62.3
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 1.1e-26 124.8 121 55.4
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 3.1e-26 123.2 121 53.7
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 4.1e-26 122.9 168 45.8
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 4.1e-26 122.9 135 51.1
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 5.3e-26 122.5 111 57.7
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 5.3e-26 122.5 106 62.3
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 5.3e-26 122.5 106 60.4
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 6.9e-26 122.1 106 61.3
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 6.9e-26 122.1 106 57.5
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 9.0e-26 121.7 153 48.4
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 9.0e-26 121.7 106 60.4
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 1.2e-25 121.3 106 60.4
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 1.2e-25 121.3 127 48.8
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 1.2e-25 121.3 106 59.4
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 1.5e-25 120.9 106 58.5
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.5e-25 120.9 106 60.4
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.5e-25 120.9 106 60.4
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 3.4e-25 119.8 106 59.4
Hma1.2p1_0066F.1_g036750 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 3.4e-25 119.8 106 59.4
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 3.4e-25 119.8 106 60.4
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 3.4e-25 119.8 105 60.0
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 3.4e-25 119.8 106 59.4
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 3.4e-25 119.8 106 59.4
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 5.9e-25 119.0 111 56.8
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 7.7e-25 118.6 147 47.6
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 7.7e-25 118.6 111 58.6
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 7.7e-25 118.6 111 58.6
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 1.0e-24 118.2 153 45.8
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 1.0e-24 118.2 108 59.3
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 1.3e-24 117.9 112 58.0
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 1.7e-24 117.5 152 45.4
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 1.7e-24 117.5 108 58.3
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 2.2e-24 117.1 112 58.0
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 2.2e-24 117.1 105 59.0
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 2.9e-24 116.7 135 48.1
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 2.9e-24 116.7 149 46.3
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 2.9e-24 116.7 114 57.9
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 2.9e-24 116.7 112 56.2
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 2.9e-24 116.7 114 57.0
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 2.9e-24 116.7 114 57.0
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 2.9e-24 116.7 106 57.5
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 3.8e-24 116.3 99 60.6
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 3.8e-24 116.3 106 57.5
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 5.0e-24 115.9 106 57.5
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 5.0e-24 115.9 112 57.1
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 5.0e-24 115.9 106 57.5
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 6.5e-24 115.5 136 47.1
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 6.5e-24 115.5 135 47.4
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 6.5e-24 115.5 112 56.2
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 8.5e-24 115.2 135 48.1
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 8.5e-24 115.2 135 46.7
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 8.5e-24 115.2 112 57.1
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 8.5e-24 115.2 112 57.1
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 8.5e-24 115.2 147 46.3
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 8.5e-24 115.2 147 46.3
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 8.5e-24 115.2 147 46.3
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 8.5e-24 115.2 106 57.5
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 1.1e-23 114.8 106 57.5
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 1.1e-23 114.8 106 56.6
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 1.1e-23 114.8 106 58.5
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 1.9e-23 114.0 112 55.4
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 1.9e-23 114.0 112 56.2
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 2.5e-23 113.6 147 46.3
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 3.2e-23 113.2 135 47.4
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 3.2e-23 113.2 106 55.7
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 4.2e-23 112.8 135 48.9
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 7.2e-23 112.1 135 48.1
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 7.2e-23 112.1 108 55.6
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 7.2e-23 112.1 112 54.5
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 9.4e-23 111.7 134 46.3
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 1.2e-22 111.3 112 54.5
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 1.2e-22 111.3 112 53.6
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 2.1e-22 110.5 112 53.6
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 3.6e-22 109.8 147 44.2
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 3.6e-22 109.8 147 44.2
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 3.6e-22 109.8 147 45.6
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 1.4e-21 107.8 147 43.5
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 1.8e-21 107.5 147 43.5
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 1.8e-21 107.5 147 43.5
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 3.9e-21 106.3 112 53.6
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 1.4e-18 97.8 108 45.4
SHI05426 Sapria himalayana HOM05D004755 ORTHO05D006137 5.3e-18 95.9 100 52.0
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 5.9e-17 92.4 106 47.2
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 2.2e-16 90.5 106 47.2
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 2.9e-16 90.1 108 40.7
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 8.5e-16 88.6 113 39.8
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 2.1e-14 84.0 52 71.2
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 4.7e-14 82.8 52 69.2
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 8.8e-13 78.6 106 36.8
CsaV3_6G026350 Cucumis sativus L. HOM05D004755 ORTHO05D006137 5.7e-12 75.9 50 66.0
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 6.3e-11 72.4 48 60.4
AagrBONN_evm.TU.Sc2ySwM_368.805 Anthoceros agrestis HOM05D004755 ORTHO05D006137 9.1e-10 68.6 82 42.7
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 7.7e-09 65.5 45 62.2
BcaB01g04780 Brassica carinata HOM05D040276 ORTHO05D039688 7.7e-09 65.5 48 58.3
BcaB01g04782 Brassica carinata HOM05D004755 ORTHO05D039688 7.7e-09 65.5 48 58.3
CDE05G0342 Ceratophyllum demersum HOM05D004755 ORTHO05D006137 5.0e-08 62.8 110 37.3
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 3.2e-07 60.1 106 36.8


User provided reference genes

Program Settings