Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 8.9e-255 883.2 491 100.0
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.0e-161 573.2 510 66.9
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.1e-159 567.4 491 66.4
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.2e-156 555.4 489 64.6
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.3e-152 543.9 492 64.2
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 8.3e-152 541.2 494 64.0
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 7.7e-150 534.6 498 62.2
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 6.6e-149 531.6 491 63.3
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 2.1e-147 526.6 498 61.4
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 6.1e-147 525.0 488 61.7
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 5.2e-146 521.9 498 61.2
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 4.4e-145 518.8 485 61.4
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 4.4e-145 518.8 496 61.5
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 4.4e-145 518.8 521 59.1
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 4.4e-145 518.8 503 59.6
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 7.5e-145 518.1 483 61.5
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 2.2e-144 516.5 499 59.9
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 3.7e-144 515.8 477 64.6
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 4.9e-144 515.4 509 59.7
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 6.3e-144 515.0 493 60.6
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.1e-143 514.2 483 61.3
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 2.0e-142 510.0 507 57.8
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 2.7e-142 509.6 484 59.9
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 4.5e-142 508.8 497 60.2
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 1.0e-141 507.7 495 59.2
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 1.3e-141 507.3 493 59.8
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 2.9e-141 506.1 500 60.2
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 2.9e-141 506.1 408 65.9
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 2.9e-141 506.1 492 61.0
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.9e-140 503.4 519 56.6
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 2.5e-140 503.1 512 57.4
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 4.3e-140 502.3 519 56.3
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 1.6e-139 500.4 512 59.8
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 2.1e-139 500.0 476 60.5
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 6.1e-139 498.4 493 59.2
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 8.0e-139 498.0 494 57.1
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 8.0e-139 498.0 501 58.3
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 3.1e-138 496.1 504 60.9
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 5.2e-138 495.4 516 57.9
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 1.2e-137 494.2 486 59.3
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 3.4e-137 492.7 486 59.1
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 4.4e-137 492.3 524 59.7
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 5.8e-137 491.9 444 66.4
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 5.8e-137 491.9 488 59.0
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 7.5e-137 491.5 495 56.4
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 9.8e-137 491.1 524 57.1
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 1.3e-136 490.7 476 59.7
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 4.9e-136 488.8 490 55.7
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 6.4e-136 488.4 488 57.2
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 6.4e-136 488.4 487 58.7
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 8.3e-136 488.0 518 56.0
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.4e-135 487.3 519 56.6
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 1.9e-135 486.9 488 59.0
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.2e-135 486.1 497 56.5
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 3.2e-135 486.1 492 57.9
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 1.2e-134 484.2 455 60.2
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 1.2e-134 484.2 515 55.3
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 6.0e-134 481.9 485 59.0
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 6.0e-134 481.9 487 56.5
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 6.0e-134 481.9 499 55.9
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 7.8e-134 481.5 493 56.6
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 7.8e-134 481.5 434 60.8
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 1.7e-133 480.3 501 56.7
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 2.3e-133 479.9 510 56.7
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 3.9e-133 479.2 480 59.2
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 5.0e-133 478.8 493 56.2
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 6.6e-133 478.4 499 57.3
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.1e-132 477.6 490 57.6
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.5e-132 477.2 494 56.5
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 1.5e-132 477.2 459 58.8
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 3.3e-132 476.1 491 58.9
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 7.3e-132 474.9 519 56.6
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.8e-131 473.0 416 63.0
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 2.8e-131 473.0 496 58.7
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 3.6e-131 472.6 511 56.6
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 1.4e-130 470.7 499 57.1
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 2.3e-130 469.9 493 55.2
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 2.3e-130 469.9 519 55.7
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 3.1e-130 469.5 493 56.0
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 8.9e-130 468.0 490 55.3
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.6e-129 466.5 488 56.8
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 1.3e-128 464.2 519 53.6
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 2.2e-128 463.4 519 53.2
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 4.9e-128 462.2 500 55.6
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 1.1e-127 461.1 405 63.0
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 1.9e-127 460.3 510 54.3
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 1.9e-127 460.3 503 53.7
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 4.6e-126 455.7 506 54.2
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.3e-125 454.1 398 61.1
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.3e-125 453.4 497 55.7
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 2.3e-125 453.4 461 56.0
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.0e-125 453.0 507 52.7
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 6.6e-125 451.8 490 53.5
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 2.5e-124 449.9 490 55.3
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 2.5e-124 449.9 499 55.9
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 9.5e-124 448.0 489 54.2
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 1.6e-123 447.2 490 55.5
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.6e-123 446.0 428 59.6
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 6.2e-123 445.3 504 53.2
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 1.1e-122 444.5 483 53.8
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.4e-122 444.1 502 54.0
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 1.4e-122 444.1 516 50.8
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 1.8e-122 443.7 485 55.3
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 2.3e-122 443.4 478 58.8
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 1.5e-121 440.7 484 57.2
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 4.4e-121 439.1 502 52.4
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 5.8e-121 438.7 485 55.3
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 7.6e-121 438.3 491 53.4
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 7.6e-121 438.3 484 54.5
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 7.6e-121 438.3 495 52.1
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 2.2e-120 436.8 486 53.1
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 2.9e-120 436.4 481 54.5
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 2.9e-120 436.4 486 55.1
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 3.7e-120 436.0 490 53.3
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 1.4e-119 434.1 481 54.1
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.4e-119 434.1 491 52.3
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 2.4e-119 433.3 486 53.5
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 9.2e-119 431.4 493 52.9
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.6e-118 430.6 494 56.9
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 1.6e-118 430.6 502 52.2
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.5e-118 429.5 329 69.3
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.6e-118 429.1 406 60.6
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 1.0e-117 427.9 456 54.8
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 2.3e-117 426.8 463 53.8
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 2.5e-116 423.3 461 52.1
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 5.6e-116 422.2 492 56.1
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 1.2e-115 421.0 488 50.2
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 2.1e-115 420.2 482 52.7
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 8.9e-114 414.8 478 56.3
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 1.3e-112 411.0 495 50.3
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 1.3e-112 411.0 493 51.1
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 3.8e-112 409.5 456 52.9
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 3.8e-112 409.5 495 49.9
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 2.4e-111 406.8 502 49.4
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 2.1e-110 403.7 476 50.4
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 2.1e-110 403.7 486 50.6
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 2.1e-110 403.7 481 51.1
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 3.5e-110 402.9 480 51.0
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 4.6e-110 402.5 481 50.9
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 2.5e-108 396.7 491 49.9
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 4.0e-106 389.4 486 49.2
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 5.3e-106 389.0 479 49.9
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 1.6e-102 377.5 397 52.9
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.1e-100 371.3 297 63.0
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 2.4e-98 363.6 503 45.7
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 2.0e-97 360.5 442 49.8
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 5.8e-97 359.0 481 49.5
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 1.0e-93 348.2 394 49.0
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 2.1e-83 313.9 458 41.5
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 2.9e-80 303.5 282 62.1
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 7.7e-73 278.9 360 46.7
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 7.4e-68 262.3 207 71.0
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 2.5e-55 220.7 387 38.8
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 1.5e-52 211.5 374 37.7
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 7.5e-52 209.1 207 60.9
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 8.0e-46 189.1 185 53.5
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 8.8e-45 185.7 134 77.6
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.7e-43 180.3 144 65.3
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.1e-42 177.2 129 76.7
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 1.7e-40 171.4 143 71.3
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 1.1e-39 168.7 127 72.4
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 4.9e-35 153.3 354 35.6
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 3.0e-29 134.0 119 54.6
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 1.2e-28 132.1 329 33.4
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 5.6e-23 113.2 114 51.8
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 3.6e-22 110.5 333 30.9
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 7.5e-20 102.8 165 37.6
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 7.5e-20 102.8 165 37.6
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 4.1e-18 97.1 344 27.9
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 1.3e-16 92.0 101 48.5
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 6.0e-09 66.6 108 47.2
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 7.8e-09 66.2 72 40.3
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 7.8e-09 66.2 53 67.9
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 4.7e-06 57.0 49 51.0


User provided reference genes

Program Settings