Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 3.8e-202 708.0 365 100.0
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 1.4e-132 476.9 381 71.1
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 2.9e-125 452.6 334 73.1
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 3.1e-95 352.8 330 59.7
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 1.5e-94 350.5 331 61.9
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 5.0e-93 345.5 334 60.8
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 3.2e-92 342.8 310 64.2
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 3.5e-91 339.3 381 55.4
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 5.7e-89 332.0 403 52.6
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.6e-88 330.5 331 57.7
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 9.0e-87 324.7 337 57.9
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 3.2e-84 316.2 330 55.2
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 5.5e-84 315.5 330 54.8
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 7.9e-83 311.6 331 56.2
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 1.4e-82 310.8 330 55.5
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 1.8e-82 310.5 328 57.0
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 2.0e-81 307.0 331 55.0
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 3.3e-81 306.2 372 51.3
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 7.4e-81 305.1 328 54.9
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 2.8e-80 303.1 350 53.1
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 3.7e-80 302.8 328 54.9
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 6.3e-80 302.0 328 54.3
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 6.3e-80 302.0 332 55.1
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 1.4e-79 300.8 331 55.6
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 2.4e-79 300.1 336 54.8
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 6.9e-79 298.5 333 54.7
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 9.1e-79 298.1 332 54.5
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 2.0e-78 297.0 330 54.2
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 2.0e-78 297.0 361 51.2
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 2.6e-78 296.6 331 55.0
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 3.4e-78 296.2 331 54.7
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 3.8e-77 292.7 334 53.3
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 8.5e-77 291.6 332 54.5
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 5.5e-76 288.9 300 55.0
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 9.4e-76 288.1 344 52.3
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 2.1e-75 287.0 332 54.5
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 2.7e-75 286.6 332 53.6
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 3.6e-75 286.2 332 54.2
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 7.9e-75 285.0 332 53.9
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 1.4e-74 284.3 330 51.2
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 2.3e-74 283.5 344 51.7
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 5.1e-74 282.3 345 51.0
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 1.1e-73 281.2 330 50.9
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 1.5e-73 280.8 344 52.6
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 2.0e-73 280.4 336 54.2
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 2.6e-73 280.0 332 54.2
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 4.4e-73 279.3 301 54.8
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 5.7e-73 278.9 331 52.9
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 5.7e-73 278.9 333 52.9
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 8.2e-72 275.0 335 52.8
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 1.1e-71 274.6 332 53.3
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 1.4e-71 274.2 337 51.6
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 7.0e-71 271.9 338 50.0
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.2e-70 271.2 318 54.7
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 1.6e-70 270.8 331 51.7
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.5e-70 269.2 334 50.9
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 1.0e-69 268.1 334 50.6
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 2.5e-68 263.5 363 48.2
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.2e-67 261.2 334 49.1
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 1.2e-67 261.2 330 50.3
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 2.1e-67 260.4 330 48.2
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 2.7e-67 260.0 330 47.9
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 3.6e-67 259.6 337 48.4
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 3.0e-66 256.5 270 55.6
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 2.2e-64 250.4 231 59.7
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 1.1e-63 248.1 358 43.9
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.4e-63 246.9 339 49.0
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 3.1e-63 246.5 351 47.0
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 5.3e-63 245.7 363 44.9
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 5.3e-63 245.7 374 44.7
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 4.5e-62 242.7 332 46.4
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 1.5e-60 237.7 294 49.7
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 5.5e-60 235.7 283 53.4
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 7.2e-60 235.3 330 47.9
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 7.2e-60 235.3 279 53.8
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 4.7e-59 232.6 374 43.0
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 4.8e-56 222.6 310 48.4
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 1.9e-52 210.7 414 37.9
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.2e-52 209.9 135 79.3
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.1e-51 207.2 288 47.2
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 2.1e-51 207.2 299 47.2
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 2.1e-51 207.2 330 43.6
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 2.7e-51 206.8 264 50.8
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 4.0e-50 203.0 201 61.2
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 6.3e-48 195.7 381 39.4
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 1.4e-47 194.5 319 41.7
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 5.4e-47 192.6 376 38.3
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 9.2e-47 191.8 420 36.7
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 2.0e-46 190.7 383 40.2
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 2.3e-45 187.2 422 36.0
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 2.9e-45 186.8 265 47.9
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 1.5e-44 184.5 336 40.5
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 9.5e-44 181.8 291 46.7
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 6.1e-43 179.1 268 45.1
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 6.1e-43 179.1 268 45.1
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 1.0e-42 178.3 264 44.7
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 1.0e-42 178.3 370 37.6
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 1.4e-42 177.9 269 45.7
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 2.6e-41 173.7 269 45.7
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 2.6e-41 173.7 269 45.7
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 3.7e-40 169.9 262 43.5
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 8.3e-40 168.7 134 62.7
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.1e-39 168.3 204 47.5
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 7.0e-39 165.6 305 39.7
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.1e-34 150.2 99 82.8
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.1e-34 150.2 99 82.8
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 4.0e-34 149.8 283 39.6
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 1.2e-33 148.3 281 39.5
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 1.2e-33 148.3 283 38.2
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 9.2e-31 138.7 237 41.4
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 1.2e-30 138.3 334 34.7
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 6.0e-30 136.0 163 50.9
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 7.8e-30 135.6 195 48.2
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 3.9e-29 133.3 151 55.6
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.1e-26 125.2 95 68.4
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 1.1e-26 125.2 95 68.4
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 2.6e-25 120.6 181 44.8
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 3.4e-25 120.2 122 59.8
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 5.8e-25 119.4 104 68.3
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 5.1e-21 106.3 111 59.5
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 1.5e-20 104.8 65 70.8
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 1.9e-20 104.4 63 73.0
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.3e-20 103.6 67 74.6
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 1.2e-19 101.7 140 42.1
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 1.4e-18 98.2 116 44.8
CSS0035544 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 3.4e-17 93.6 84 60.7
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 1.9e-15 87.8 203 32.5
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 9.2e-15 85.5 125 44.0
CSS0027816 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 6.0e-14 82.8 80 58.8
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.6e-11 74.7 158 36.7
Phvul.008G238000 Phaseolus vulgaris HOM05D026408 ORTHO05D029776 8.1e-11 72.4 178 32.0
VMungo0647G0061 Vigna mungo HOM05D026408 ORTHO05D029776 8.1e-11 72.4 135 35.6
SEGI_38635 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 2.2e-08 64.3 76 47.4
QL06p002867 Quercus lobata HOM05D006010 ORTHO05D007381 2.4e-07 60.8 62 56.5


User provided reference genes

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