Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim09G0110300 Rhododendron simsii HOM05D003188 ORTHO05D003602 1.3e-70 269.6 136 100.0
vmacro10787 Vaccinium macrocarpon HOM05D003188 ORTHO05D003602 6.0e-44 181.0 96 92.7
Cc04_g07560 Coffea canephora HOM05D003188 ORTHO05D003602 1.9e-42 176.0 91 94.5
TWI15G1168 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 1.9e-42 176.0 99 88.9
Dinv36902 Davidia involucrata HOM05D003188 ORTHO05D003602 2.5e-42 175.6 91 93.4
Manes.01G020800 Manihot esculenta HOM05D003188 ORTHO05D003602 2.5e-42 175.6 91 93.4
CiPaw.09G173500 Carya illinoinensis HOM05D003188 ORTHO05D003602 4.3e-42 174.9 91 93.4
GSVIVG01029101001 Vitis vinifera HOM05D003188 ORTHO05D003602 4.3e-42 174.9 91 93.4
RcHm_v2.0_Chr7g0184541 Rosa chinensis HOM05D003188 ORTHO05D003602 7.4e-42 174.1 91 92.3
TAR371G0535 Trochodendron aralioides HOM05D003188 ORTHO05D003602 9.6e-42 173.7 91 92.3
Cpa.g.sc3890.1 Carica papaya HOM05D003188 ORTHO05D003602 1.3e-41 173.3 99 87.9
CANSAT64G2546 Cannabis sativa HOM05D003188 ORTHO05D003602 1.6e-41 172.9 91 92.3
CAN.G438.112 Capsicum annuum HOM05D003188 ORTHO05D003602 2.1e-41 172.6 89 93.3
Nitab4.5_0000410g0090 Nicotiana tabacum HOM05D003188 ORTHO05D003602 2.1e-41 172.6 89 93.3
Nitab4.5_0003716g0120 Nicotiana tabacum HOM05D003188 ORTHO05D003602 2.1e-41 172.6 89 93.3
SalBow7G4400 Salvia bowleyana HOM05D003188 ORTHO05D003602 2.1e-41 172.6 90 92.2
SHI18942 Sapria himalayana HOM05D003188 ORTHO05D003602 2.1e-41 172.6 93 90.3
PGSC0003DMG400005704 Solanum tuberosum HOM05D003188 ORTHO05D003602 2.1e-41 172.6 89 93.3
Nn3g17701 Nelumbo nucifera HOM05D003188 ORTHO05D003602 3.7e-41 171.8 91 92.3
Atru.chr12.1495 Acer truncatum HOM05D003188 ORTHO05D003602 6.2e-41 171.0 91 94.5
Lj9A216T28 Lonicera japonica HOM05D003188 ORTHO05D003602 6.2e-41 171.0 91 94.5
Cfa016042 Carpinus fangiana HOM05D003188 ORTHO05D003602 8.1e-41 170.6 91 91.2
Haze_18599 Corylus avellana HOM05D003188 ORTHO05D003602 8.1e-41 170.6 91 91.2
MD06G1210700 Malus domestica HOM05D003188 ORTHO05D003602 8.1e-41 170.6 91 90.1
MSTRG.14163 Avicennia marina HOM05D003188 ORTHO05D003602 1.1e-40 170.2 90 92.2
MSTRG.6539 Avicennia marina HOM05D003188 ORTHO05D003602 1.1e-40 170.2 90 91.1
FAN08G1208 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.1e-40 170.2 91 89.0
FAN18G0006 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.1e-40 170.2 91 89.0
Oeu058326.2 Olea europaea HOM05D003188 ORTHO05D003602 1.1e-40 170.2 91 91.2
PSO017G4721 Papaver somniferum HOM05D003188 ORTHO05D003602 1.1e-40 170.2 91 92.3
PSO478G1890 Papaver somniferum HOM05D003188 ORTHO05D003602 1.1e-40 170.2 91 92.3
Atru.chr2.2945 Acer truncatum HOM05D003188 ORTHO05D003602 1.4e-40 169.9 91 93.4
CDE05G2945 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 1.4e-40 169.9 91 90.1
MELO3C017285.2 Cucumis melo HOM05D003188 ORTHO05D003602 1.4e-40 169.9 91 89.0
CsaV3_1G003600 Cucumis sativus L. HOM05D003188 ORTHO05D003602 1.4e-40 169.9 91 89.0
Duzib133G0881 Durio zibethinus HOM05D003188 ORTHO05D003602 1.4e-40 169.9 91 89.0
Solyc03g119790.3 Solanum lycopersicum HOM05D003188 ORTHO05D003602 1.8e-40 169.5 89 92.1
Sopen03g038640 Solanum pennellii HOM05D003188 ORTHO05D003602 1.8e-40 169.5 89 92.1
Manes.12G158000 Manihot esculenta HOM05D003188 ORTHO05D003602 2.4e-40 169.1 91 89.0
PGR083G2637 Punica granatum HOM05D003188 ORTHO05D003602 2.4e-40 169.1 91 87.9
TAR629G2124 Trochodendron aralioides HOM05D003188 ORTHO05D003602 2.4e-40 169.1 91 90.1
HanXRQChr02g0055261 Helianthus annuus HOM05D003188 ORTHO05D003602 3.1e-40 168.7 91 89.0
MD14G1221400 Malus domestica HOM05D003188 ORTHO05D003602 3.1e-40 168.7 91 89.0
Sed0010135 Sechium edule HOM05D003188 ORTHO05D003602 3.1e-40 168.7 91 87.9
Thecc.01G174500 Theobroma cacao HOM05D003188 ORTHO05D003602 3.1e-40 168.7 91 87.9
AUR62009031 Chenopodium quinoa HOM05D003188 ORTHO05D003602 4.0e-40 168.3 96 87.5
SGA_v2.0_scaffold159G37605 Striga asiatica HOM05D003188 ORTHO05D003602 4.0e-40 168.3 90 91.1
TWI81G0274 Tripterygium wilfordii HOM05D003188 ORTHO05D003602 4.0e-40 168.3 99 86.9
Actinidia30194 Actinidia chinensis HOM05D003188 ORTHO05D003602 1.2e-39 166.8 91 91.2
EL10Ac2g04540 Beta vulgaris HOM05D003188 ORTHO05D003602 1.5e-39 166.4 94 86.2
Ciclev10019993m.g Citrus clementina HOM05D003188 ORTHO05D003602 1.5e-39 166.4 90 88.9
Gohir.D11G162400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 1.5e-39 166.4 91 86.8
Gorai.007G172700 Gossypium raimondii HOM05D003188 ORTHO05D003602 1.5e-39 166.4 91 86.8
Duzib138G0729 Durio zibethinus HOM05D003188 ORTHO05D003602 2.6e-39 165.6 91 86.8
ECA234G2517 Erigeron canadensis HOM05D003188 ORTHO05D003602 2.6e-39 165.6 90 87.8
Aqoxy3G03899 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 4.5e-39 164.9 91 86.8
Aqoxy5G00582 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 4.5e-39 164.9 91 86.8
Migut.H01201 Erythranthe guttata HOM05D003188 ORTHO05D003602 4.5e-39 164.9 90 88.9
Gohir.A11G155400 Gossypium hirsutum HOM05D003188 ORTHO05D003602 4.5e-39 164.9 91 85.7
Aqoxy3G00385 Aquilegia oxysepala HOM05D003188 ORTHO05D003602 5.8e-39 164.5 91 90.1
Ca_02535_v3 Cicer arietinum L. HOM05D003188 ORTHO05D003602 7.6e-39 164.1 89 84.3
Glyma.05G013500 Glycine max HOM05D003188 ORTHO05D003602 7.6e-39 164.1 89 84.3
Psat4g043680 Pisum sativum HOM05D003188 ORTHO05D003602 7.6e-39 164.1 89 84.3
SGA_v2.0_scaffold34G13894 Striga asiatica HOM05D003188 ORTHO05D003602 7.6e-39 164.1 92 90.2
TPR.G26763 Trifolium pratense HOM05D003188 ORTHO05D003602 7.6e-39 164.1 89 84.3
DCAR_015131 Daucus carota HOM05D003188 ORTHO05D003602 9.9e-39 163.7 91 85.7
Prupe.5G216800 Prunus persica HOM05D003188 ORTHO05D003602 9.9e-39 163.7 91 87.9
Eucgr.B00695 Eucalyptus grandis HOM05D003188 ORTHO05D003602 1.7e-38 162.9 91 85.7
SalBow1G5101 Salvia bowleyana HOM05D003188 ORTHO05D003602 1.7e-38 162.9 92 85.9
Lj4g0026321 Lotus japonicus HOM05D003188 ORTHO05D003602 2.2e-38 162.5 89 83.1
DCAR_011343 Daucus carota HOM05D003188 ORTHO05D003602 2.9e-38 162.2 96 80.2
Lj2g0027481 Lotus japonicus HOM05D003188 ORTHO05D003602 3.8e-38 161.8 89 83.1
COL.COLO4_19984 Corchorus olitorius HOM05D003188 ORTHO05D003602 6.4e-38 161.0 88 88.6
VMungo1215G2257 Vigna mungo HOM05D003188 ORTHO05D003602 8.4e-38 160.6 87 85.1
Phvul.003G177500 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 1.1e-37 160.2 89 83.1
ATR0787G140 Amborella trichopoda HOM05D003188 ORTHO05D003602 1.4e-37 159.8 88 87.5
Glyma.17G121700 Glycine max HOM05D003188 ORTHO05D003602 1.4e-37 159.8 89 80.9
Os08g0343300 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 1.4e-37 159.8 88 88.6
Gohir.D07G087600 Gossypium hirsutum HOM05D003188 ORTHO05D003602 2.4e-37 159.1 91 82.4
Gorai.001G093700 Gossypium raimondii HOM05D003188 ORTHO05D003602 2.4e-37 159.1 91 82.4
Peaxi162Scf00015g00637 Petunia axillaris HOM05D003188 ORTHO05D003602 2.4e-37 159.1 83 92.8
Hund13349 Selenicereus undatus HOM05D003188 ORTHO05D003602 2.4e-37 159.1 91 84.6
SEGI_20097 Sequoiadendron giganteum HOM05D003188 ORTHO05D003602 2.4e-37 159.1 91 82.4
Zm00001eb028110 Zea mays HOM05D003188 ORTHO05D003602 2.4e-37 159.1 89 85.4
Zm00001eb223630 Zea mays HOM05D003188 ORTHO05D003602 2.4e-37 159.1 88 87.5
HPP92_009419 Vanilla planifolia HOM05D003188 ORTHO05D003602 3.2e-37 158.7 90 84.4
Lsat_1_v5_gn_8_11621 Lactuca sativa HOM05D003188 ORTHO05D003602 7.1e-37 157.5 90 85.6
Glyma.04G146000 Glycine max HOM05D003188 ORTHO05D003602 9.3e-37 157.1 97 79.4
Glyma.06G210400 Glycine max HOM05D003188 ORTHO05D003602 9.3e-37 157.1 97 79.4
Migut.M00376 Erythranthe guttata HOM05D003188 ORTHO05D003602 1.2e-36 156.8 90 86.7
arahy.Tifrunner.gnm1.ann1.8N8EX2 Arachis hypogaea HOM05D003188 ORTHO05D003602 2.1e-36 156.0 89 83.1
Phvul.009G200700 Phaseolus vulgaris HOM05D003188 ORTHO05D003602 2.1e-36 156.0 89 82.0
VMungo1309G2361 Vigna mungo HOM05D003188 ORTHO05D003602 2.1e-36 156.0 89 82.0
arahy.Tifrunner.gnm1.ann1.MGXB0Y Arachis hypogaea HOM05D003188 ORTHO05D003602 2.7e-36 155.6 97 77.3
Lj9C432G3 Lonicera japonica HOM05D003188 ORTHO05D003602 4.6e-36 154.8 85 91.8
arahy.Tifrunner.gnm1.ann1.73QXIF Arachis hypogaea HOM05D003188 ORTHO05D003602 6.0e-36 154.5 89 82.0
Atru.chr3.1253 Acer truncatum HOM05D003188 ORTHO05D003602 7.9e-36 154.1 93 88.2
CiPaw.12G051000 Carya illinoinensis HOM05D003188 ORTHO05D003602 1.3e-35 153.3 91 83.5
AUR62023272 Chenopodium quinoa HOM05D003188 ORTHO05D003602 1.3e-35 153.3 86 89.5
ClCG06G015050 Citrullus lanatus HOM05D003188 ORTHO05D003602 1.8e-35 152.9 124 65.3
Ah.16g101610 Amaranthus hybridus HOM05D003188 ORTHO05D003602 5.1e-35 151.4 85 87.1
Gohir.A07G084654 Gossypium hirsutum HOM05D003188 ORTHO05D003602 5.1e-35 151.4 91 81.3
Lalb_Chr12g0197111 Lupinus albus HOM05D003188 ORTHO05D003602 8.7e-35 150.6 86 82.6
ATR0580G381 Amborella trichopoda HOM05D003188 ORTHO05D003602 2.5e-34 149.1 90 82.2
Lsat_1_v5_gn_6_3380 Lactuca sativa HOM05D003188 ORTHO05D003602 2.5e-34 149.1 93 79.6
Lalb_Chr12g0197531 Lupinus albus HOM05D003188 ORTHO05D003602 2.5e-34 149.1 86 81.4
Lj5A144T29 Lonicera japonica HOM05D003188 ORTHO05D003602 2.8e-33 145.6 124 63.7
arahy.Tifrunner.gnm1.ann1.36CJM4 Arachis hypogaea HOM05D003188 ORTHO05D003602 6.2e-33 144.4 115 65.2
THA.LOC104803141 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 8.2e-33 144.1 89 76.4
Hund05006 Selenicereus undatus HOM05D003188 ORTHO05D003602 1.1e-32 143.7 86 81.4
Lj1g0006529 Lotus japonicus HOM05D003188 ORTHO05D003602 2.4e-32 142.5 121 65.3
Medtr8g077000 Medicago truncatula HOM05D003188 ORTHO05D003602 3.1e-32 142.1 89 75.3
FAN03G2249 Fragaria x ananassa HOM05D003188 ORTHO05D003602 4.0e-32 141.7 91 82.4
FAN17G1577 Fragaria x ananassa HOM05D003188 ORTHO05D003602 4.0e-32 141.7 91 82.4
Aa31LG1G9260 Aethionema arabicum HOM05D003188 ORTHO05D003602 9.0e-32 140.6 97 71.1
FvH4_7g21490 Fragaria vesca HOM05D003188 ORTHO05D003602 1.5e-31 139.8 91 81.3
FAN06G4431 Fragaria x ananassa HOM05D003188 ORTHO05D003602 1.5e-31 139.8 91 81.3
RcHm_v2.0_Chr7g0184551 Rosa chinensis HOM05D003188 ORTHO05D003602 2.0e-31 139.4 92 73.9
THA.LOC104811602 Tarenaya hassleriana HOM05D003188 ORTHO05D003602 2.0e-31 139.4 89 75.3
Potri.010G102000 Populus trichocarpa HOM05D003188 ORTHO05D003602 2.6e-31 139.0 92 76.1
FAN06G5104 Fragaria x ananassa HOM05D003188 ORTHO05D003602 4.5e-31 138.3 91 80.2
AL1G12780 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 7.6e-31 137.5 97 69.1
AT1G03280 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 7.6e-31 137.5 97 69.1
BcaC05g24548 Brassica carinata HOM05D003188 ORTHO05D003602 1.0e-30 137.1 99 68.7
Sp1g02280 Schrenkiella parvula HOM05D003188 ORTHO05D003602 1.0e-30 137.1 97 69.1
A10p01840 Brassica napus HOM05D003188 ORTHO05D003602 1.3e-30 136.7 99 68.7
C05p01820 Brassica napus HOM05D003188 ORTHO05D003602 1.3e-30 136.7 99 68.7
BolC5t28960H Brassica oleracea HOM05D003188 ORTHO05D003602 1.3e-30 136.7 99 68.7
BraA10t42457Z Brassica rapa HOM05D003188 ORTHO05D000504 1.3e-30 136.7 99 68.7
RcHm_v2.0_Chr1g0365801 Rosa chinensis HOM05D003188 ORTHO05D003602 1.3e-30 136.7 94 78.7
Carub.0001s0239 Capsella rubella HOM05D003188 ORTHO05D003602 2.2e-30 136.0 89 69.7
CARHR002580 Cardamine hirsuta HOM05D003188 ORTHO05D003602 2.2e-30 136.0 99 68.7
FAN18G3545 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.8e-30 135.2 96 71.9
FvH4_5g12750 Fragaria vesca HOM05D003188 ORTHO05D003602 4.9e-30 134.8 96 71.9
Sed0006028 Sechium edule HOM05D003188 ORTHO05D003602 1.4e-29 133.3 86 70.9
Mapoly0046s0071 Marchantia polymorpha HOM05D003188 ORTHO05D003602 1.9e-29 132.9 90 73.3
Pp3c27_3010 Physcomitrium patens HOM05D003188 ORTHO05D003602 4.2e-29 131.7 90 72.2
Actinidia37847 Actinidia chinensis HOM05D003188 ORTHO05D003602 4.6e-28 128.3 89 75.3
Thhalv10023437m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 3.9e-27 125.2 89 67.4
CBR_g8498 Chara braunii HOM05D003188 ORTHO05D003602 5.1e-27 124.8 90 68.9
FvH4_4g17460 Fragaria vesca HOM05D003188 ORTHO05D003602 6.7e-27 124.4 66 89.4
FAN12G3292 Fragaria x ananassa HOM05D003188 ORTHO05D003602 6.7e-27 124.4 66 89.4
FAN11G0282 Fragaria x ananassa HOM05D003188 ORTHO05D003602 9.7e-26 120.6 64 90.6
AagrBONN_evm.TU.Sc2ySwM_228.1658 Anthoceros agrestis HOM05D003188 ORTHO05D003602 6.3e-25 117.9 85 70.6
PSO170G0558 Papaver somniferum HOM05D003188 ORTHO05D003602 1.1e-24 117.1 89 69.7
CARHR227350 Cardamine hirsuta HOM05D003188 ORTHO05D003602 3.1e-24 115.5 116 52.6
Cpa.g.sc79.50 Carica papaya HOM05D003188 ORTHO05D003602 4.1e-24 115.2 99 64.6
Sabra10G0074600 Salix brachista HOM05D003188 ORTHO05D003602 4.1e-24 115.2 75 77.3
Thhalv10025149m.g Eutrema salsugineum HOM05D003188 ORTHO05D003602 9.0e-24 114.0 84 64.3
SMO196G0219 Selaginella moellendorffii HOM05D003188 ORTHO05D003602 1.2e-23 113.6 85 68.2
Carub.0007s2063 Capsella rubella HOM05D003188 ORTHO05D003602 2.0e-23 112.8 88 63.6
Sp7g18890 Schrenkiella parvula HOM05D003188 ORTHO05D003602 3.4e-23 112.1 90 63.3
FvH4_6g19571 Fragaria vesca HOM05D003188 ORTHO05D003602 1.3e-22 110.2 70 82.9
AT4G20810 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 8.5e-22 107.5 85 60.0
Os11g0137400 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 1.9e-21 106.3 83 67.5
A01p11180 Brassica napus HOM05D003188 ORTHO05D003602 7.2e-21 104.4 90 58.9
BraA01t01064Z Brassica rapa HOM05D003188 ORTHO05D003602 7.2e-21 104.4 90 58.9
FAN18G2667 Fragaria x ananassa HOM05D003188 ORTHO05D003602 9.4e-21 104.0 111 55.9
AL7G33550 Arabidopsis lyrata HOM05D003188 ORTHO05D003602 1.2e-20 103.6 99 52.5
AT4G20340 Arabidopsis thaliana HOM05D003188 ORTHO05D003602 1.0e-19 100.5 99 50.5
CDE05G0460 Ceratophyllum demersum HOM05D003188 ORTHO05D003602 6.7e-19 97.8 91 60.4
BolC1t01296H Brassica oleracea HOM05D003188 ORTHO05D003602 9.7e-18 94.0 92 54.3
GSVIVG01012261001 Vitis vinifera HOM05D003188 ORTHO05D003602 1.3e-17 93.6 49 87.8
Carub.0007s2083 Capsella rubella HOM05D003188 ORTHO05D003602 1.7e-17 93.2 89 51.7
BcaC09g51427 Brassica carinata HOM05D003188 ORTHO05D003602 6.3e-17 91.3 92 53.3
C01p13220 Brassica napus HOM05D003188 ORTHO05D003602 6.3e-17 91.3 92 53.3
Os11g0137500 Oryza sativa ssp. japonica HOM05D003188 ORTHO05D003602 8.2e-17 90.9 88 52.3
Nn4g23712 Nelumbo nucifera HOM05D003188 ORTHO05D003602 9.1e-16 87.4 50 82.0
FAN04G0824 Fragaria x ananassa HOM05D003188 ORTHO05D003602 3.4e-15 85.5 55 78.2
Oeu050638.1 Olea europaea HOM05D003188 ORTHO05D003602 5.9e-15 84.7 43 95.3
QL10p022977 Quercus lobata HOM05D003188 ORTHO05D003602 1.3e-14 83.6 48 81.2
MCO04G055 Micromonas commoda HOM05D003188 ORTHO05D003602 1.4e-11 73.6 84 46.4
EL10Ac4g09232 Beta vulgaris HOM05D003188 ORTHO05D003602 1.5e-10 70.1 93 45.2
arahy.Tifrunner.gnm1.ann1.LTYE9H Arachis hypogaea HOM05D003188 ORTHO05D003602 3.3e-10 68.9 46 67.4
arahy.Tifrunner.gnm1.ann1.Y7FW0X Arachis hypogaea HOM05D003188 ORTHO05D003602 8.2e-09 64.3 34 82.4
Cre11.g481550 Chlamydomonas reinhardtii HOM05D003188 ORTHO05D003602 8.2e-09 64.3 100 39.0
PRCOL_00002792 Prasinoderma coloniale HOM05D003188 ORTHO05D003602 5.3e-08 61.6 89 38.2
Eucgr.B01773 Eucalyptus grandis HOM05D003188 ORTHO05D003602 7.7e-07 57.8 33 78.8
Eucgr.E01579 Eucalyptus grandis HOM05D003188 ORTHO05D003602 7.7e-07 57.8 33 78.8
arahy.Tifrunner.gnm1.ann1.NH5Z51 Arachis hypogaea HOM05D003188 ORTHO05D003602 1.3e-06 57.0 39 61.5


User provided reference genes

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