Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 7.0e-170 600.5 301 100.0
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.9e-82 310.1 275 64.0
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 3.7e-78 295.8 301 58.1
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 3.3e-74 282.7 269 59.5
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 9.5e-74 281.2 261 58.2
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 8.0e-73 278.1 290 56.2
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 3.4e-71 272.7 248 59.7
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 9.8e-71 271.2 272 55.9
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 8.3e-70 268.1 264 57.2
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 8.3e-70 268.1 272 54.8
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 1.1e-69 267.7 257 57.2
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 1.8e-69 266.9 261 56.7
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 2.4e-69 266.5 261 57.1
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 3.1e-69 266.2 271 55.0
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 1.2e-68 264.2 261 55.9
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.2e-68 264.2 271 54.6
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 3.5e-68 262.7 264 56.8
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 5.9e-68 261.9 264 56.4
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 7.8e-68 261.5 261 55.9
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 1.0e-67 261.2 268 55.6
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 2.9e-67 259.6 264 53.8
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 3.8e-67 259.2 272 54.4
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 3.8e-67 259.2 263 52.1
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 8.6e-67 258.1 264 53.4
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 1.9e-66 256.9 263 52.1
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 1.9e-66 256.9 253 56.5
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 7.3e-66 255.0 264 53.4
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 2.1e-65 253.4 264 53.4
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 6.1e-65 251.9 264 53.8
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 6.1e-65 251.9 264 53.4
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 1.8e-64 250.4 261 54.4
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 5.2e-64 248.8 261 53.3
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 6.8e-64 248.4 263 52.9
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 6.8e-64 248.4 261 53.3
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 3.4e-63 246.1 257 54.9
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 3.4e-63 246.1 261 53.3
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 5.8e-63 245.4 275 52.7
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 5.8e-63 245.4 276 52.2
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 9.8e-63 244.6 260 52.7
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 1.3e-62 244.2 261 51.0
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 2.2e-62 243.4 271 49.8
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 2.2e-62 243.4 263 52.9
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 2.9e-62 243.0 222 59.9
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 3.7e-62 242.7 263 52.5
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 4.9e-62 242.3 278 49.3
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 4.9e-62 242.3 263 52.5
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 4.9e-62 242.3 262 50.8
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 6.4e-62 241.9 272 51.5
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 8.3e-62 241.5 261 52.9
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 8.3e-62 241.5 276 48.6
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 1.1e-61 241.1 271 49.1
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 1.1e-61 241.1 261 51.0
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 1.4e-61 240.7 279 51.3
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 1.4e-61 240.7 261 51.3
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 1.4e-61 240.7 261 51.3
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 3.2e-61 239.6 222 59.5
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 3.2e-61 239.6 271 52.0
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 1.2e-60 237.7 264 51.9
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 2.0e-60 236.9 248 52.4
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 2.0e-60 236.9 248 52.4
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 2.0e-60 236.9 261 52.1
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 2.7e-60 236.5 261 50.6
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 2.7e-60 236.5 223 57.4
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 3.5e-60 236.1 275 48.7
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 4.6e-60 235.7 271 49.4
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 6.0e-60 235.3 260 54.2
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 2.3e-59 233.4 276 48.9
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 2.3e-59 233.4 261 50.2
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 6.6e-59 231.9 261 49.4
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 1.1e-58 231.1 263 49.8
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 2.5e-58 229.9 260 49.2
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 2.5e-58 229.9 256 50.8
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 2.5e-58 229.9 260 49.2
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 4.3e-58 229.2 272 48.9
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 7.3e-58 228.4 264 50.0
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 1.2e-57 227.6 248 54.8
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 4.7e-57 225.7 260 48.8
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 1.1e-56 224.6 260 49.2
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 5.2e-56 222.2 265 48.3
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 1.2e-55 221.1 265 47.9
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 2.0e-55 220.3 192 58.3
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 9.8e-55 218.0 269 49.1
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 9.8e-55 218.0 260 48.1
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 1.3e-54 217.6 227 50.7
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 2.9e-54 216.5 291 45.0
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 1.6e-52 210.7 264 47.7
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 2.7e-52 209.9 261 46.0
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 1.0e-51 208.0 261 46.0
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.7e-51 207.2 244 50.0
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 2.3e-51 206.8 196 58.2
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 1.1e-50 204.5 183 60.1
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 1.6e-49 200.7 219 55.3
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 6.2e-49 198.7 263 49.0
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 6.8e-48 195.3 263 48.7
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 6.8e-48 195.3 264 45.8
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 1.2e-47 194.5 176 58.0
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 1.5e-47 194.1 249 46.2
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 1.5e-47 194.1 249 46.2
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 9.9e-47 191.4 183 54.1
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 1.3e-46 191.0 184 55.4
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 1.3e-46 191.0 209 52.6
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 2.9e-46 189.9 253 45.8
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 1.9e-45 187.2 198 54.5
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 6.0e-44 182.2 240 45.8
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 4.4e-39 166.0 158 56.3
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 7.6e-39 165.2 222 44.6
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 1.9e-37 160.6 161 55.3
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 4.2e-37 159.5 210 45.2
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 1.7e-35 154.1 150 55.3
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 7.3e-34 148.7 160 52.5
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 1.4e-32 144.4 132 56.1
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 3.1e-32 143.3 146 50.7
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 1.6e-28 131.0 261 37.9
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 4.6e-28 129.4 94 64.9
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 3.9e-27 126.3 106 58.5
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 4.2e-21 106.3 78 61.5
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 1.1e-18 98.2 217 30.0
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 9.0e-16 88.6 119 44.5
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 3.4e-15 86.7 66 59.1
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 3.4e-15 86.7 262 28.2
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 2.8e-09 67.0 43 72.1
FAN20G1527 Fragaria x ananassa HOM05D006697 ORTHO05D205377 4.9e-06 56.2 91 40.7


User provided reference genes

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