Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 2.4e-78 295.4 146 100.0
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 6.2e-47 191.0 123 76.4
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 8.2e-47 190.7 123 76.4
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.4e-46 189.9 102 89.2
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 1.4e-46 189.9 102 89.2
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.8e-46 189.5 102 89.2
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 1.8e-46 189.5 105 86.7
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 2.4e-46 189.1 105 85.7
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 2.4e-46 189.1 102 89.2
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 4.0e-46 188.3 123 74.8
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 4.0e-46 188.3 102 89.2
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 5.3e-46 188.0 102 87.3
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 6.9e-46 187.6 108 85.2
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 6.9e-46 187.6 121 74.4
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 6.9e-46 187.6 102 89.2
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 9.0e-46 187.2 102 87.3
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 1.2e-45 186.8 105 83.8
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 1.2e-45 186.8 102 87.3
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 1.2e-45 186.8 102 87.3
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 1.5e-45 186.4 123 74.0
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 1.5e-45 186.4 102 88.2
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.5e-45 186.4 102 87.3
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.0e-45 186.0 123 74.0
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.0e-45 186.0 102 86.3
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 2.6e-45 185.7 123 73.2
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 2.6e-45 185.7 102 85.3
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 2.6e-45 185.7 102 87.3
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.6e-45 185.7 102 87.3
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 3.4e-45 185.3 102 86.3
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.4e-45 185.3 102 86.3
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 3.4e-45 185.3 102 85.3
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 4.5e-45 184.9 101 86.1
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 4.5e-45 184.9 102 85.3
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 5.8e-45 184.5 102 86.3
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 5.8e-45 184.5 122 73.8
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 5.8e-45 184.5 102 86.3
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 7.6e-45 184.1 102 85.3
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 7.6e-45 184.1 102 85.3
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 1.0e-44 183.7 102 84.3
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 1.0e-44 183.7 122 73.8
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 1.3e-44 183.3 123 74.0
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.3e-44 183.3 123 74.0
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.3e-44 183.3 123 74.0
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.3e-44 183.3 102 86.3
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 1.3e-44 183.3 102 86.3
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 2.2e-44 182.6 102 85.3
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 2.2e-44 182.6 118 74.6
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 2.2e-44 182.6 102 85.3
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 2.2e-44 182.6 102 86.3
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 2.2e-44 182.6 102 85.3
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 2.9e-44 182.2 123 73.2
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 3.8e-44 181.8 122 72.1
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 3.8e-44 181.8 101 84.2
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 4.9e-44 181.4 123 73.2
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 6.5e-44 181.0 102 86.3
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 6.5e-44 181.0 109 81.7
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 8.4e-44 180.6 101 83.2
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 8.4e-44 180.6 102 82.4
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.1e-43 180.3 102 83.3
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 1.1e-43 180.3 102 83.3
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.9e-43 179.5 123 72.4
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 1.9e-43 179.5 100 84.0
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 2.5e-43 179.1 102 81.4
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 2.5e-43 179.1 102 82.4
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 2.5e-43 179.1 102 82.4
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 2.5e-43 179.1 102 80.4
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 3.2e-43 178.7 98 87.8
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 3.2e-43 178.7 102 82.4
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 4.2e-43 178.3 102 83.3
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 7.1e-43 177.6 102 81.4
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 9.3e-43 177.2 100 84.0
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 9.3e-43 177.2 102 81.4
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 9.3e-43 177.2 102 81.4
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 9.3e-43 177.2 100 84.0
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 9.3e-43 177.2 102 79.4
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 1.2e-42 176.8 102 82.4
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 1.2e-42 176.8 102 82.4
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.6e-42 176.4 98 86.7
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.6e-42 176.4 98 86.7
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 1.6e-42 176.4 100 84.0
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 1.6e-42 176.4 100 84.0
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 1.6e-42 176.4 100 84.0
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 1.6e-42 176.4 100 84.0
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.6e-42 176.4 100 84.0
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 1.6e-42 176.4 100 84.0
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 1.6e-42 176.4 100 84.0
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.6e-42 176.4 100 84.0
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 1.6e-42 176.4 100 84.0
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 2.1e-42 176.0 122 70.5
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 2.7e-42 175.6 98 86.7
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 2.7e-42 175.6 100 84.0
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 2.7e-42 175.6 123 67.5
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 7.9e-42 174.1 104 80.8
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 1.0e-41 173.7 100 83.0
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 1.3e-41 173.3 98 84.7
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.3e-41 173.3 99 83.8
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 1.3e-41 173.3 102 79.4
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 1.3e-41 173.3 100 82.0
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 1.8e-41 172.9 102 81.4
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 1.8e-41 172.9 102 78.4
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.8e-41 172.9 105 76.2
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 1.8e-41 172.9 105 76.2
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 2.3e-41 172.6 102 83.3
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 3.0e-41 172.2 98 83.7
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 3.9e-41 171.8 102 78.4
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 3.9e-41 171.8 102 80.4
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 5.1e-41 171.4 98 82.7
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 5.1e-41 171.4 103 78.6
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 5.1e-41 171.4 100 83.0
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 6.7e-41 171.0 102 78.4
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 6.7e-41 171.0 102 78.4
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 8.7e-41 170.6 102 79.4
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 8.7e-41 170.6 105 75.2
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.1e-40 170.2 102 78.4
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 1.1e-40 170.2 99 80.8
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 1.9e-40 169.5 102 74.5
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 1.9e-40 169.5 102 78.4
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.5e-40 169.1 103 77.7
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 2.5e-40 169.1 103 77.7
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 4.3e-40 168.3 102 78.4
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 4.3e-40 168.3 102 78.4
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 5.7e-40 167.9 102 77.5
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 5.7e-40 167.9 103 77.7
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 5.7e-40 167.9 102 74.5
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 3.7e-39 165.2 103 76.7
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 6.3e-39 164.5 123 61.0
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 2.4e-38 162.5 122 63.1
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 2.6e-37 159.1 102 68.6
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 1.0e-36 157.1 102 67.6
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.3e-36 156.8 128 61.7
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.2e-36 156.0 104 76.9
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 1.4e-35 153.3 87 81.6
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 3.6e-34 148.7 104 69.2
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 6.1e-34 147.9 98 66.3
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 9.7e-32 140.6 77 87.0
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 2.2e-31 139.4 90 67.8
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 2.8e-31 139.0 75 86.7
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 4.8e-31 138.3 104 69.2
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 4.1e-30 135.2 75 82.7
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.7e-28 129.8 111 55.9
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 6.5e-28 127.9 78 79.5
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 6.5e-28 127.9 77 79.2
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 3.6e-26 122.1 102 64.7
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 5.7e-24 114.8 101 55.4
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 1.3e-23 113.6 98 55.1
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.1e-22 110.5 84 59.5
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 2.5e-19 99.4 71 60.6
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 1.4e-17 93.6 146 40.4
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.3e-16 89.0 52 80.8
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 7.4e-16 87.8 50 78.0
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 7.4e-16 87.8 50 78.0
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 1.9e-11 73.2 86 43.0


User provided reference genes

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