Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0049300 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.4e-273 945.7 484 100.0
vmacro18283 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 5.5e-156 555.1 486 63.8
vmacro23390 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.6e-155 553.5 486 63.6
Rhsim08G0050100 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.0e-142 510.0 485 59.2
Rhsim08G0049600 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.2e-140 501.5 491 60.7
Rhsim08G0048900 Rhododendron simsii HOM05D004871 ORTHO05D005755 3.9e-138 495.7 489 60.1
Rhsim08G0050600 Rhododendron simsii HOM05D004871 ORTHO05D005755 7.9e-131 471.5 509 54.6
Rhsim08G0049400 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.0e-125 454.5 490 58.4
Rhsim08G0050200 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.2e-123 447.6 483 56.3
Hma1.2p1_2120F.1_g314420 Hydrangea macrophylla HOM05D004871 ORTHO05D005755 1.1e-121 441.0 484 51.2
vmacro23391 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.0e-121 440.3 488 53.3
Rhsim08G0050500 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.1e-119 434.5 491 55.6
CSS0032397 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.0e-117 427.9 478 52.3
CiPaw.03G043700 Carya illinoinensis HOM05D004871 ORTHO05D005755 1.1e-116 424.5 491 50.3
vmacro18285 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.5e-116 423.3 485 52.6
vmacro23392 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 2.5e-116 423.3 485 52.6
Rhsim08G0050400 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.1e-115 420.2 488 53.9
RcHm_v2.0_Chr2g0172801 Rosa chinensis HOM05D004871 ORTHO05D005755 5.2e-114 415.6 488 47.7
Rhsim08G0049900 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.8e-111 407.1 485 54.4
Ciclev10015079m.g Citrus clementina HOM05D004871 ORTHO05D005755 5.0e-109 399.1 491 46.6
Duzib147G1217 Durio zibethinus HOM05D004871 ORTHO05D005755 2.5e-108 396.7 490 47.6
Lju41C42T3 Lonicera japonica HOM05D004871 ORTHO05D005755 5.5e-108 395.6 455 50.1
Gohir.D04G057500 Gossypium hirsutum HOM05D004871 ORTHO05D005755 7.2e-108 395.2 484 46.5
MD17G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.2e-107 394.4 494 45.7
Gorai.012G064200 Gossypium raimondii HOM05D004871 ORTHO05D005755 2.1e-107 393.7 484 46.9
Potri.017G069800 Populus trichocarpa HOM05D004871 ORTHO05D005755 2.7e-107 393.3 496 47.2
Atru.chr6.2393 Acer truncatum HOM05D004871 ORTHO05D005755 2.3e-106 390.2 491 46.0
Peaxi162Scf00129g00168 Petunia axillaris HOM05D004871 ORTHO05D005755 2.3e-106 390.2 484 46.1
Gorai.001G265000 Gossypium raimondii HOM05D004871 ORTHO05D005755 3.0e-106 389.8 483 47.0
Thecc.04G017200 Theobroma cacao HOM05D004871 ORTHO05D005755 3.0e-106 389.8 478 47.5
Gohir.A05G355800 Gossypium hirsutum HOM05D004871 ORTHO05D005755 5.2e-106 389.0 484 46.1
COL.COLO4_29115 Corchorus olitorius HOM05D004871 ORTHO05D005755 3.4e-105 386.3 492 46.3
Prupe.3G291600 Prunus persica HOM05D004871 ORTHO05D005755 7.5e-105 385.2 493 45.2
Oeu054623.1 Olea europaea HOM05D004871 ORTHO05D005755 1.7e-104 384.0 487 47.2
Gohir.D07G229900 Gossypium hirsutum HOM05D004871 ORTHO05D005755 2.2e-104 383.6 484 46.5
Cfa007369 Carpinus fangiana HOM05D004871 ORTHO05D005755 4.8e-104 382.5 495 46.7
Sopen02g031150 Solanum pennellii HOM05D004871 ORTHO05D005755 4.8e-104 382.5 487 47.6
DCAR_021722 Daucus carota HOM05D004871 ORTHO05D005755 8.3e-104 381.7 484 46.3
QL02p074723 Quercus lobata HOM05D004871 ORTHO05D005755 1.1e-103 381.3 488 46.9
ClCG10G013890 Citrullus lanatus HOM05D004871 ORTHO05D005755 4.1e-103 379.4 485 43.3
Rhsim08G0049500 Rhododendron simsii HOM05D004871 ORTHO05D005755 5.4e-103 379.0 304 68.4
PGSC0003DMG400012633 Solanum tuberosum HOM05D004871 ORTHO05D005755 5.4e-103 379.0 486 47.7
CiPaw.04G028400 Carya illinoinensis HOM05D004871 ORTHO05D005755 9.1e-103 378.3 488 48.0
CANSAT64G1143 Cannabis sativa HOM05D004871 ORTHO05D005755 1.6e-102 377.5 487 45.0
Cpa.g.sc130.82 Carica papaya HOM05D004871 ORTHO05D005755 1.6e-102 377.5 488 45.9
Haze_14739 Corylus avellana HOM05D004871 ORTHO05D005755 1.6e-102 377.5 491 46.8
Cc07_g01680 Coffea canephora HOM05D004871 ORTHO05D005755 1.3e-101 374.4 484 46.9
Dinv35106 Davidia involucrata HOM05D004871 ORTHO05D005755 1.7e-101 374.0 485 48.2
Nn3g16731 Nelumbo nucifera HOM05D004871 ORTHO05D005755 5.0e-101 372.5 495 46.1
Nn3g16736 Nelumbo nucifera HOM05D004871 ORTHO05D005755 5.0e-101 372.5 495 46.1
TWI12G0316 Tripterygium wilfordii HOM05D004871 ORTHO05D005755 5.5e-100 369.0 489 44.6
Manes.15G150700 Manihot esculenta HOM05D004871 ORTHO05D005755 1.6e-99 367.5 494 45.3
Lsat_1_v5_gn_0_47681 Lactuca sativa HOM05D004871 ORTHO05D005755 2.1e-99 367.1 487 46.8
PGR083G0754 Punica granatum HOM05D004871 ORTHO05D005755 2.1e-99 367.1 491 46.0
MELO3C026581.2 Cucumis melo HOM05D004871 ORTHO05D005755 1.8e-98 364.0 485 40.8
CsaV3_3G042800 Cucumis sativus L. HOM05D004871 ORTHO05D005755 3.0e-98 363.2 485 41.2
CAN.G473.11 Capsicum annuum HOM05D004871 ORTHO05D005755 2.0e-97 360.5 486 44.4
Oeu018139.1 Olea europaea HOM05D004871 ORTHO05D005755 4.4e-97 359.4 486 44.7
Sed0007166 Sechium edule HOM05D004871 ORTHO05D005755 1.3e-96 357.8 487 41.5
Rhsim08G0050000 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.7e-96 357.5 485 46.8
Lj7C599T13 Lonicera japonica HOM05D004871 ORTHO05D005755 3.7e-96 356.3 494 43.7
HanXRQChr17g0548491 Helianthus annuus HOM05D004871 ORTHO05D005755 4.1e-95 352.8 487 45.4
Sabra17G0062100 Salix brachista HOM05D004871 ORTHO05D005755 2.7e-94 350.1 501 43.3
FAN14G1702 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.3e-93 347.8 492 41.9
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 6.6e-93 345.5 300 60.3
FvH4_6g51200 Fragaria vesca HOM05D004871 ORTHO05D005755 6.6e-93 345.5 492 42.1
FAN02G2556 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.5e-92 344.4 492 41.9
Eucgr.J02242 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.2e-91 341.3 495 41.8
MD09G1027100 Malus domestica HOM05D004871 ORTHO05D005755 1.6e-91 340.9 489 41.1
TAR622G0125 Trochodendron aralioides HOM05D004871 ORTHO05D005755 6.1e-91 339.0 444 45.0
MSTRG.24039 Avicennia marina HOM05D004871 ORTHO05D005755 3.4e-89 333.2 485 41.9
Lj1g0007322 Lotus japonicus HOM05D004871 ORTHO05D005755 2.9e-88 330.1 497 41.2
PSO832G2649 Papaver somniferum HOM05D004871 ORTHO05D005755 8.3e-88 328.6 497 39.4
SGA_v2.0_scaffold18G08277 Striga asiatica HOM05D004871 ORTHO05D005755 1.4e-87 327.8 487 41.7
Rhsim08G0049200 Rhododendron simsii HOM05D004871 ORTHO05D005755 1.6e-86 324.3 292 58.9
vmacro18284 Vaccinium macrocarpon HOM05D004871 ORTHO05D005755 1.6e-86 324.3 381 50.1
Sc16g0004350 Simmondsia chinensis HOM05D004871 ORTHO05D005755 4.6e-86 322.8 487 42.3
PSO063G1038 Papaver somniferum HOM05D004871 ORTHO05D005755 5.0e-85 319.3 495 38.2
Aqoxy5G03783 Aquilegia oxysepala HOM05D004871 ORTHO05D005755 3.3e-84 316.6 504 42.3
SalBow1G4779 Salvia bowleyana HOM05D004871 ORTHO05D005755 5.6e-84 315.8 485 41.2
Lalb_Chr24g0402861 Lupinus albus HOM05D004871 ORTHO05D005755 6.2e-83 312.4 497 40.0
Atru.chr6.2392 Acer truncatum HOM05D004871 ORTHO05D005755 3.1e-82 310.1 295 53.9
BraA04t17009Z Brassica rapa HOM05D004871 ORTHO05D005755 1.5e-81 307.8 489 39.7
Medtr7g033720 Medicago truncatula HOM05D004871 ORTHO05D005755 2.0e-81 307.4 486 39.7
Ca_23007_v3 Cicer arietinum L. HOM05D004871 ORTHO05D005755 5.8e-81 305.8 504 39.3
Eucgr.H01852 Eucalyptus grandis HOM05D004871 ORTHO05D005755 1.7e-80 304.3 497 39.6
HanXRQChr15g0475301 Helianthus annuus HOM05D004871 ORTHO05D005755 2.9e-80 303.5 486 39.5
CDE08G0710 Ceratophyllum demersum HOM05D004871 ORTHO05D005755 6.4e-80 302.4 454 43.8
Phvul.008G154600 Phaseolus vulgaris HOM05D004871 ORTHO05D005755 8.3e-80 302.0 487 41.3
THA.LOC104825322 Tarenaya hassleriana HOM05D004871 ORTHO05D005755 1.9e-79 300.8 486 38.1
TAR371G0422 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.2e-79 300.1 486 40.5
Gohir.A07G223200 Gossypium hirsutum HOM05D004871 ORTHO05D005755 7.0e-79 298.9 481 39.7
CARHR261520 Cardamine hirsuta HOM05D004871 ORTHO05D005755 2.1e-78 297.4 491 39.7
Thhalv10028043m.g Eutrema salsugineum HOM05D004871 ORTHO05D005755 2.7e-78 297.0 496 40.1
Migut.H00077 Erythranthe guttata HOM05D004871 ORTHO05D005755 3.5e-78 296.6 487 38.8
SalBow2G2412 Salvia bowleyana HOM05D004871 ORTHO05D005755 4.6e-78 296.2 487 38.8
Glyma.19G068600 Glycine max HOM05D004871 ORTHO05D005755 7.8e-78 295.4 486 40.7
Peaxi162Scf00129g01652 Petunia axillaris HOM05D004871 ORTHO05D005755 1.0e-77 295.0 416 42.3
Sp7g01440 Schrenkiella parvula HOM05D004871 ORTHO05D005755 2.3e-77 293.9 497 38.6
TAR371G0152 Trochodendron aralioides HOM05D004871 ORTHO05D005755 2.3e-77 293.9 486 40.5
ATR0686G244 Amborella trichopoda HOM05D004871 ORTHO05D005755 5.1e-77 292.7 488 38.5
Nitab4.5_0003318g0120 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.9e-76 290.8 296 51.7
Nitab4.5_0002468g0010 Nicotiana tabacum HOM05D004871 ORTHO05D005755 1.6e-75 287.7 293 52.2
Rhsim08G0050300 Rhododendron simsii HOM05D004871 ORTHO05D005755 2.1e-75 287.3 240 64.2
HPP92_009906 Vanilla planifolia HOM05D004871 ORTHO05D005755 2.8e-75 287.0 493 38.1
TAR371G1027 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.4e-74 284.6 490 38.8
Lalb_Chr14g0362771 Lupinus albus HOM05D004871 ORTHO05D005755 2.6e-73 280.4 486 37.4
C04p47280 Brassica napus HOM05D004871 ORTHO05D005755 5.8e-73 279.3 492 38.4
BolC4t26328H Brassica oleracea HOM05D004871 ORTHO05D005755 5.8e-73 279.3 492 38.4
Zm00001eb246170 Zea mays HOM05D004871 ORTHO05D005755 7.5e-73 278.9 496 38.5
A04p13500 Brassica napus HOM05D004871 ORTHO05D005755 1.3e-72 278.1 484 37.4
FAN05G1656 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.3e-72 278.1 370 43.8
AT5G40470 Arabidopsis thaliana HOM05D004871 ORTHO05D005755 1.4e-71 274.6 504 37.7
TAR633G0371 Trochodendron aralioides HOM05D004871 ORTHO05D005755 9.2e-71 271.9 336 46.4
Eucgr.L00043 Eucalyptus grandis HOM05D004871 ORTHO05D005755 4.6e-70 269.6 496 35.9
Aa31LG9G1150 Aethionema arabicum HOM05D004871 ORTHO05D005755 1.6e-67 261.2 508 37.0
AL7G49360 Arabidopsis lyrata HOM05D004871 ORTHO05D005755 1.4e-66 258.1 502 36.5
Carub.0007s3511 Capsella rubella HOM05D004871 ORTHO05D005755 6.8e-66 255.8 497 36.0
unitig_899.g14805 Utricularia gibba HOM05D004871 ORTHO05D005755 1.7e-64 251.1 415 38.8
Actinidia35771 Actinidia chinensis HOM05D004871 ORTHO05D005755 2.1e-62 244.2 336 43.8
GSVIVG01032408001 Vitis vinifera HOM05D004871 ORTHO05D005755 2.7e-62 243.8 279 47.0
Psat3g166880 Pisum sativum HOM05D004871 ORTHO05D005755 3.5e-62 243.4 295 44.4
Glyma.16G071200 Glycine max HOM05D004871 ORTHO05D005755 4.6e-62 243.0 497 35.4
VMungo1383G0924 Vigna mungo HOM05D004871 ORTHO05D005755 1.1e-58 231.9 276 46.7
BcaB06g27513 Brassica carinata HOM05D004871 ORTHO05D005755 1.0e-53 215.3 496 33.7
Peaxi162Scf00129g01633 Petunia axillaris HOM05D004871 ORTHO05D005755 1.3e-48 198.4 200 48.5
SMO298G0062 Selaginella moellendorffii HOM05D004871 ORTHO05D005755 2.4e-47 194.1 482 30.7
FAN09G0732 Fragaria x ananassa HOM05D000795 ORTHO05D005755 7.1e-47 192.6 240 44.2
Nn1g05920 Nelumbo nucifera HOM05D004871 ORTHO05D005755 2.5e-44 184.1 257 43.6
TAR629G3424 Trochodendron aralioides HOM05D004871 ORTHO05D005755 1.1e-39 168.7 235 43.0
Cc00_g26710 Coffea canephora HOM05D004871 ORTHO05D005755 3.2e-39 167.2 308 38.6
TAR371G0343 Trochodendron aralioides HOM05D004871 ORTHO05D005755 7.1e-39 166.0 191 46.1
TAR374G1232 Trochodendron aralioides HOM05D004871 ORTHO05D005755 8.2e-35 152.5 156 53.8
ATR0589G064 Amborella trichopoda HOM05D004871 ORTHO05D005755 1.1e-34 152.1 332 34.6
CSS0034270 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 1.4e-31 141.7 168 48.2
ATR0762G040 Amborella trichopoda HOM05D004871 ORTHO05D005755 2.5e-31 141.0 284 35.2
FAN09G0037 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.5e-30 137.1 156 51.3
FAN27G1866 Fragaria x ananassa HOM05D004871 ORTHO05D005755 3.5e-30 137.1 159 47.8
Rhsim08G0180400 Rhododendron simsii HOM05D001576 ORTHO05D000401 3.5e-30 137.1 133 56.4
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 5.1e-29 133.3 148 48.0
HanXRQChr07g0188231 Helianthus annuus HOM05D004871 ORTHO05D005755 6.3e-27 126.3 148 43.9
FAN05G3698 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.9e-23 114.8 166 39.8
BcaB07g32983 Brassica carinata HOM05D004871 ORTHO05D005755 2.4e-18 97.8 126 43.7
Solyc02g086440.4 Solanum lycopersicum HOM05D004871 ORTHO05D005755 3.1e-18 97.4 212 37.7
CSS0039002 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 2.6e-17 94.4 83 60.2
TPR.G1076 Trifolium pratense HOM05D004871 ORTHO05D005755 3.8e-16 90.5 100 49.0
TAR314G0001 Trochodendron aralioides HOM05D004871 ORTHO05D005755 3.8e-16 90.5 132 39.4
CSS0033026 Camellia sinensis var. sinensis HOM05D004871 ORTHO05D005755 3.2e-15 87.4 71 63.4
Nitab4.5_0007441g0020 Nicotiana tabacum HOM05D004871 ORTHO05D005755 2.3e-13 81.3 79 50.6
CAN.G955.3 Capsicum annuum HOM05D002125 ORTHO05D002105 2.8e-11 74.3 253 26.1
Actinidia29062 Actinidia chinensis HOM05D002125 ORTHO05D002105 6.3e-11 73.2 253 24.9
RcHm_v2.0_Chr2g0157391 Rosa chinensis HOM05D002813 ORTHO05D003203 3.1e-10 70.9 252 25.4
Psat3g012240 Pisum sativum HOM05D001219 ORTHO05D001017 4.1e-10 70.5 237 23.6
MD12G1181200 Malus domestica HOM05D002125 ORTHO05D002105 1.0e-08 65.9 253 23.3
Psat0s1674g0080 Pisum sativum HOM05D001219 ORTHO05D001017 1.3e-08 65.5 245 22.4
ClCG02G019190 Citrullus lanatus HOM05D002125 ORTHO05D002105 1.1e-07 62.4 235 26.8
VMungo0331G0655 Vigna mungo HOM05D001219 ORTHO05D001017 1.1e-07 62.4 276 25.0
FAN14G0631 Fragaria x ananassa HOM05D004871 ORTHO05D005755 1.5e-07 62.0 79 44.3
TPR.G16396 Trifolium pratense HOM05D001219 ORTHO05D001017 1.9e-07 61.6 223 25.6
MBI04_g25313_MAGBIO Magnolia biondii HOM05D001818 ORTHO05D001780 2.5e-07 61.2 249 22.5
AL6G49050 Arabidopsis lyrata HOM05D000710 ORTHO05D000336 3.2e-07 60.8 168 30.4
Medtr4g019320 Medicago truncatula HOM05D001219 ORTHO05D001017 3.2e-07 60.8 504 23.6
CANSAT54G1695 Cannabis sativa HOM05D002125 ORTHO05D002105 7.2e-07 59.7 227 26.0
Aa31LG9G9120 Aethionema arabicum HOM05D000710 ORTHO05D000336 9.4e-07 59.3 135 30.4
MELO3C015517.2 Cucumis melo HOM05D003317 ORTHO05D003696 9.4e-07 59.3 174 26.4
unitig_26.g8959 Utricularia gibba HOM05D002125 ORTHO05D002105 9.4e-07 59.3 312 22.4
CANSAT35G0731 Cannabis sativa HOM05D002125 ORTHO05D002105 1.2e-06 58.9 258 22.9
AUR62013441 Chenopodium quinoa HOM05D001219 ORTHO05D001017 1.2e-06 58.9 253 23.3
ECA246G0900 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.2e-06 58.9 56 44.6
Nitab4.5_0003794g0040 Nicotiana tabacum HOM05D002813 ORTHO05D003203 1.6e-06 58.5 255 25.9
Solyc10g076290.2 Solanum lycopersicum HOM05D002125 ORTHO05D002105 1.6e-06 58.5 253 23.3
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 1.6e-06 58.5 192 29.2
Sopen10g027910 Solanum pennellii HOM05D002125 ORTHO05D002105 2.1e-06 58.2 253 23.3
CsaV3_1G040990 Cucumis sativus L. HOM05D003317 ORTHO05D003696 2.7e-06 57.8 257 23.7
BolC9t53224H Brassica oleracea HOM05D000710 ORTHO05D000336 3.6e-06 57.4 144 31.9
AUR62016485 Chenopodium quinoa HOM05D001219 ORTHO05D001017 3.6e-06 57.4 452 20.1
Sabra11G0100200 Salix brachista HOM05D000710 ORTHO05D000336 3.6e-06 57.4 131 34.4
Sc05g0001600 Simmondsia chinensis HOM05D005998 ORTHO05D007664 4.7e-06 57.0 253 25.3
CSS0047715 Camellia sinensis var. sinensis HOM05D002125 ORTHO05D002105 6.1e-06 56.6 255 24.3
Eucgr.J01853 Eucalyptus grandis HOM05D002125 ORTHO05D002105 6.1e-06 56.6 226 28.8
Os02g0317300 Oryza sativa ssp. japonica HOM05D000710 ORTHO05D000336 8.0e-06 56.2 167 26.9
TPR.G29727 Trifolium pratense HOM05D001219 ORTHO05D001017 8.0e-06 56.2 131 34.4


User provided reference genes

Program Settings