Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0048300 Rhododendron simsii HOM05D001715 ORTHO05D004824 8.2e-177 623.6 317 100.0
Dinv33423 Davidia involucrata HOM05D001715 ORTHO05D004824 1.5e-77 293.9 270 60.4
CSS0010910 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 9.6e-77 291.2 270 58.9
vmacro07988 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.8e-76 289.7 270 58.5
Dinv25723 Davidia involucrata HOM05D001715 ORTHO05D004510 8.1e-76 288.1 270 59.3
Cc07_g00030 Coffea canephora HOM05D001715 ORTHO05D004824 1.5e-74 283.9 270 57.4
vmacro18295 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 3.4e-74 282.7 226 67.3
Actinidia36126 Actinidia chinensis HOM05D001715 ORTHO05D004824 1.0e-73 281.2 270 56.7
Actinidia05979 Actinidia chinensis HOM05D001715 ORTHO05D004824 3.8e-73 279.3 270 55.9
Hma1.2p1_1747F.1_g300590 Hydrangea macrophylla HOM05D001715 ORTHO05D004824 4.2e-72 275.8 265 57.0
Lsat_1_v5_gn_4_184360 Lactuca sativa HOM05D001715 ORTHO05D004824 6.0e-71 271.9 270 55.6
COL.COLO4_29175 Corchorus olitorius HOM05D001715 ORTHO05D004824 6.7e-70 268.5 270 53.7
Potri.001G342700 Populus trichocarpa HOM05D001715 ORTHO05D004824 8.7e-70 268.1 271 54.6
Manes.17G110800 Manihot esculenta HOM05D001715 ORTHO05D004824 1.1e-69 267.7 271 55.4
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 1.9e-69 266.9 275 54.5
MSTRG.24047 Avicennia marina HOM05D001715 ORTHO05D004824 3.3e-69 266.2 269 54.3
Lju41A43T27 Lonicera japonica HOM05D001715 ORTHO05D004824 3.3e-69 266.2 283 53.4
Duzib147G1449 Durio zibethinus HOM05D001715 ORTHO05D004824 4.8e-68 262.3 270 51.9
QL05p032480 Quercus lobata HOM05D001715 ORTHO05D004824 4.8e-68 262.3 273 52.7
QL05p033603 Quercus lobata HOM05D001715 ORTHO05D004824 4.8e-68 262.3 273 52.7
Rhsim10G0014300 Rhododendron simsii HOM05D001715 ORTHO05D004824 8.2e-68 261.5 276 52.2
DCAR_015064 Daucus carota HOM05D001715 ORTHO05D004824 1.4e-67 260.8 267 51.7
Manes.15G152100 Manihot esculenta HOM05D001715 ORTHO05D004824 2.4e-67 260.0 271 54.2
Thecc.04G019800 Theobroma cacao HOM05D001715 ORTHO05D004824 2.4e-67 260.0 270 52.2
Gohir.A07G224000 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.0e-67 258.1 270 51.5
HanXRQChr09g0255491 Helianthus annuus HOM05D001715 ORTHO05D004824 9.0e-67 258.1 271 52.4
PGSC0003DMG400012610 Solanum tuberosum HOM05D001715 ORTHO05D004824 9.0e-67 258.1 270 53.0
Migut.H00070 Erythranthe guttata HOM05D001715 ORTHO05D004824 2.0e-66 256.9 273 51.3
Cfa007336 Carpinus fangiana HOM05D001715 ORTHO05D004824 2.6e-66 256.5 279 50.9
Gohir.D07G231300 Gossypium hirsutum HOM05D001715 ORTHO05D004824 3.4e-66 256.1 270 51.1
Gorai.001G266400 Gossypium raimondii HOM05D001715 ORTHO05D004824 3.4e-66 256.1 270 51.1
HanXRQChr15g0486831 Helianthus annuus HOM05D001715 ORTHO05D004824 3.4e-66 256.1 262 54.6
Prupe.3G294200 Prunus persica HOM05D001715 ORTHO05D004824 3.4e-66 256.1 265 54.3
Solyc02g093490.3 Solanum lycopersicum HOM05D001715 ORTHO05D004824 3.4e-66 256.1 270 52.6
AT3G27460 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 4.5e-66 255.8 267 52.4
Cpa.g.sc108.80 Carica papaya HOM05D001715 ORTHO05D004824 4.5e-66 255.8 267 53.2
THA.LOC104805361 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 4.5e-66 255.8 273 52.4
Ciclev10016259m.g Citrus clementina HOM05D001715 ORTHO05D004824 5.9e-66 255.4 269 54.3
CANSAT64G1664 Cannabis sativa HOM05D001715 ORTHO05D004824 7.6e-66 255.0 270 52.2
Peaxi162Scf00420g00131 Petunia axillaris HOM05D001715 ORTHO05D004824 1.0e-65 254.6 265 53.2
Atru.chr6.2434 Acer truncatum HOM05D001715 ORTHO05D004824 1.3e-65 254.2 270 53.3
Gohir.D11G070100 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.7e-65 253.8 270 50.7
Gorai.007G075200 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.7e-65 253.8 270 50.7
Sabra16G0222300 Salix brachista HOM05D001715 ORTHO05D004824 1.7e-65 253.8 287 51.9
BcaC06g33817 Brassica carinata HOM05D001715 ORTHO05D004824 3.8e-65 252.7 269 52.0
AL5G16870 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 5.0e-65 252.3 271 52.4
Aa31LG2G5160 Aethionema arabicum HOM05D001715 ORTHO05D004824 6.5e-65 251.9 268 51.5
CiPaw.03G045800 Carya illinoinensis HOM05D001715 ORTHO05D004824 6.5e-65 251.9 263 52.5
Lj7A601T103 Lonicera japonica HOM05D001715 ORTHO05D004824 6.5e-65 251.9 268 51.9
MD17G1021800 Malus domestica HOM05D001715 ORTHO05D004824 8.5e-65 251.5 265 52.5
Gohir.A11G065900 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.1e-64 251.1 268 50.4
THA.LOC104825315 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 1.1e-64 251.1 273 50.9
unitig_748.g6979 Utricularia gibba HOM05D001715 ORTHO05D004824 1.1e-64 251.1 269 50.9
CARHR148830 Cardamine hirsuta HOM05D001715 ORTHO05D004824 1.4e-64 250.8 270 52.2
FAN23G2554 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.4e-64 250.8 282 51.1
FAN19G0324 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.9e-64 250.4 263 51.7
AL7G49260 Arabidopsis lyrata HOM05D001715 ORTHO05D004824 3.2e-64 249.6 274 51.5
Thhalv10004728m.g Eutrema salsugineum HOM05D001715 ORTHO05D004824 3.2e-64 249.6 279 50.2
Sopen02g038180 Solanum pennellii HOM05D001715 ORTHO05D004824 3.2e-64 249.6 270 52.2
Sp2g16670 Schrenkiella parvula HOM05D001715 ORTHO05D004824 4.2e-64 249.2 269 52.4
BcaC06g30988 Brassica carinata HOM05D001715 ORTHO05D004824 5.5e-64 248.8 271 51.7
TAR374G1502 Trochodendron aralioides HOM05D001715 ORTHO05D004824 5.5e-64 248.8 272 51.1
TWI12G0372 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 7.2e-64 248.4 269 51.3
Duzib187G0323 Durio zibethinus HOM05D001715 ORTHO05D004824 9.3e-64 248.1 270 50.0
Gohir.A05G354400 Gossypium hirsutum HOM05D001715 ORTHO05D004824 9.3e-64 248.1 270 50.7
TWI12G0250 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 9.3e-64 248.1 269 51.3
TWI12G0380 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 9.3e-64 248.1 269 51.3
C07p36500 Brassica napus HOM05D001715 ORTHO05D003849 1.2e-63 247.7 271 51.7
BolC7t44170H Brassica oleracea HOM05D001715 ORTHO05D004824 1.2e-63 247.7 271 51.7
Carub.0007s3497 Capsella rubella HOM05D001715 ORTHO05D004824 1.2e-63 247.7 274 51.1
A06p41160 Brassica napus HOM05D001715 ORTHO05D003849 1.6e-63 247.3 271 51.7
Carub.0005s0587 Capsella rubella HOM05D001715 ORTHO05D004824 1.6e-63 247.3 271 52.0
Lj1g0020864 Lotus japonicus HOM05D001715 ORTHO05D004824 1.6e-63 247.3 269 49.8
BraA06t27038Z Brassica rapa HOM05D001715 ORTHO05D004824 2.7e-63 246.5 269 51.7
MD09G1022400 Malus domestica HOM05D001715 ORTHO05D004824 4.6e-63 245.7 265 52.5
AT5G40550 Arabidopsis thaliana HOM05D001715 ORTHO05D004824 6.1e-63 245.4 272 51.1
CAN.G473.27 Capsicum annuum HOM05D001715 ORTHO05D004824 6.1e-63 245.4 267 50.6
FAN28G2154 Fragaria x ananassa HOM05D001715 ORTHO05D004824 1.3e-62 244.2 263 51.7
TWI12G0217 Tripterygium wilfordii HOM05D001715 ORTHO05D004824 1.3e-62 244.2 265 52.1
Gorai.012G065400 Gossypium raimondii HOM05D001715 ORTHO05D004824 1.8e-62 243.8 270 49.3
TPR.G1113 Trifolium pratense HOM05D001715 ORTHO05D004824 1.8e-62 243.8 261 50.2
Ah.02g128230 Amaranthus hybridus HOM05D001715 ORTHO05D004824 3.0e-62 243.0 267 50.6
Glyma.16G069000 Glycine max HOM05D001715 ORTHO05D004824 3.0e-62 243.0 271 49.4
Gohir.D04G058700 Gossypium hirsutum HOM05D001715 ORTHO05D004824 5.1e-62 242.3 270 49.3
Lalb_Chr22g0360701 Lupinus albus HOM05D001715 ORTHO05D004824 6.7e-62 241.9 264 51.1
Medtr7g033200 Medicago truncatula HOM05D001715 ORTHO05D004824 6.7e-62 241.9 262 49.6
Glyma.19G055900 Glycine max HOM05D001715 ORTHO05D004824 1.1e-61 241.1 266 50.8
GSVIVG01032368001 Vitis vinifera HOM05D001715 ORTHO05D004824 1.1e-61 241.1 279 49.1
FvH4_1g25240 Fragaria vesca HOM05D001715 ORTHO05D004824 1.5e-61 240.7 263 51.0
Lalb_Chr24g0403561 Lupinus albus HOM05D001715 ORTHO05D004824 1.9e-61 240.4 264 50.8
Hund15533 Selenicereus undatus HOM05D001715 ORTHO05D004824 1.9e-61 240.4 278 50.4
MSTRG.3136 Avicennia marina HOM05D001715 ORTHO05D004824 4.3e-61 239.2 269 49.8
CARHR261430 Cardamine hirsuta HOM05D001715 ORTHO05D004824 5.7e-61 238.8 270 50.0
Ca_10003_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 5.7e-61 238.8 264 50.4
VMungo1383G3508 Vigna mungo HOM05D001715 ORTHO05D004824 7.4e-61 238.4 272 48.9
Phvul.001G096400 Phaseolus vulgaris HOM05D001715 ORTHO05D004824 9.7e-61 238.0 273 48.7
PGR083G0973 Punica granatum HOM05D001715 ORTHO05D004824 1.3e-60 237.7 271 50.6
SHI03767 Sapria himalayana HOM05D001715 ORTHO05D004824 2.8e-60 236.5 267 47.9
TAR622G0120 Trochodendron aralioides HOM05D001715 ORTHO05D004824 2.8e-60 236.5 261 51.0
MD17G1021900 Malus domestica HOM05D001715 ORTHO05D004824 3.7e-60 236.1 265 51.3
Psat3g166200 Pisum sativum HOM05D001715 ORTHO05D004824 3.7e-60 236.1 263 49.0
RcHm_v2.0_Chr2g0123161 Rosa chinensis HOM05D001715 ORTHO05D004824 3.7e-60 236.1 263 50.6
Aqoxy5G03737 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 1.2e-58 231.1 270 46.3
Eucgr.J02260 Eucalyptus grandis HOM05D001715 ORTHO05D004824 1.2e-58 231.1 271 46.9
PSO063G0233 Papaver somniferum HOM05D001715 ORTHO05D004824 2.0e-58 230.3 273 48.4
PSO754G0079 Papaver somniferum HOM05D001715 ORTHO05D004824 2.0e-58 230.3 273 48.4
THA.LOC104823958 Tarenaya hassleriana HOM05D001715 ORTHO05D004824 5.9e-58 228.8 273 48.0
arahy.Tifrunner.gnm1.ann1.VP8W98 Arachis hypogaea HOM05D001715 ORTHO05D004824 7.7e-58 228.4 263 50.2
A02p35490 Brassica napus HOM05D001715 ORTHO05D003849 7.7e-58 228.4 266 48.9
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 1.3e-57 227.6 280 46.4
Ca_12396_v3 Cicer arietinum L. HOM05D001715 ORTHO05D004824 2.2e-57 226.9 295 45.1
C02p54210 Brassica napus HOM05D001715 ORTHO05D003849 5.0e-57 225.7 266 48.5
Sed0015141 Sechium edule HOM05D001715 ORTHO05D004824 8.5e-57 224.9 283 48.1
arahy.Tifrunner.gnm1.ann1.Q5RJ9B Arachis hypogaea HOM05D001715 ORTHO05D004824 2.5e-56 223.4 265 49.8
ClCG10G013770 Citrullus lanatus HOM05D001715 ORTHO05D004824 4.2e-56 222.6 263 49.0
PGR142G0496 Punica granatum HOM05D001715 ORTHO05D004824 9.4e-56 221.5 269 47.6
CsaV3_3G042890 Cucumis sativus L. HOM05D001715 ORTHO05D004824 2.7e-55 219.9 267 47.6
Oeu035801.2 Olea europaea HOM05D001715 ORTHO05D004824 2.7e-55 219.9 232 53.0
Os12g0290600 Oryza sativa ssp. japonica HOM05D001715 ORTHO05D004824 1.0e-54 218.0 263 47.5
QL02p073949 Quercus lobata HOM05D001715 ORTHO05D004824 1.0e-54 218.0 369 39.6
Haze_14762 Corylus avellana HOM05D001715 ORTHO05D004824 1.8e-54 217.2 330 40.6
MELO3C026589.2 Cucumis melo HOM05D001715 ORTHO05D004824 3.0e-54 216.5 267 47.2
HPP92_019596 Vanilla planifolia HOM05D001715 ORTHO05D004824 8.8e-54 214.9 269 45.0
SGA_v2.0_scaffold47G17520 Striga asiatica HOM05D001715 ORTHO05D004824 1.1e-53 214.5 269 47.2
BolC2t11484H Brassica oleracea HOM05D001715 ORTHO05D004824 2.2e-52 210.3 269 50.2
vmacro18298 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 2.8e-52 209.9 229 52.8
AUR62033204 Chenopodium quinoa HOM05D001715 ORTHO05D004824 8.2e-52 208.4 317 42.6
CDE04G1703 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 1.1e-51 208.0 272 45.6
Nn4g22578 Nelumbo nucifera HOM05D001715 ORTHO05D004824 4.1e-51 206.1 261 47.1
CDE07G0729 Ceratophyllum demersum HOM05D001715 ORTHO05D004824 6.9e-51 205.3 272 44.9
vmacro18296 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 9.1e-51 204.9 213 54.9
BcaC03g17465 Brassica carinata HOM05D001715 ORTHO05D003849 1.2e-50 204.5 273 46.2
BcaB07g30155 Brassica carinata HOM05D001715 ORTHO05D004824 3.4e-50 203.0 274 46.4
Zm00001eb409000 Zea mays HOM05D001715 ORTHO05D004824 2.9e-49 199.9 266 43.2
BraA02t08550Z Brassica rapa HOM05D001715 ORTHO05D003849 7.2e-48 195.3 302 44.4
Sc03g0007260 Simmondsia chinensis HOM05D001715 ORTHO05D004824 7.2e-48 195.3 230 49.6
MBI11_g21317_MAGBIO Magnolia biondii HOM05D001715 ORTHO05D004824 9.4e-48 194.9 327 39.8
AUR62041236 Chenopodium quinoa HOM05D001715 ORTHO05D004824 7.9e-47 191.8 225 50.7
ATR0824G003 Amborella trichopoda HOM05D001715 ORTHO05D004824 1.4e-46 191.0 273 42.5
Nitab4.5_0006683g0120 Nicotiana tabacum HOM05D001715 ORTHO05D004824 2.3e-46 190.3 267 44.2
CSS0002803 Camellia sinensis var. sinensis HOM05D001715 ORTHO05D004824 6.7e-46 188.7 138 70.3
arahy.Tifrunner.gnm1.ann1.3H0FM5 Arachis hypogaea HOM05D001715 ORTHO05D004824 4.4e-45 186.0 237 48.1
Duzib264G0165 Durio zibethinus HOM05D001715 ORTHO05D004824 2.2e-44 183.7 217 45.6
ECA232G3480 Erigeron canadensis HOM05D001715 ORTHO05D004824 1.1e-40 171.4 128 68.0
FAN26G1929 Fragaria x ananassa HOM05D001715 ORTHO05D004824 3.2e-40 169.9 230 43.9
Duzib187G0149 Durio zibethinus HOM05D001715 ORTHO05D004824 2.1e-39 167.2 135 61.5
Nitab4.5_0001562g0140 Nicotiana tabacum HOM05D001715 ORTHO05D004824 1.4e-38 164.5 200 48.5
Pp3c18_8800 Physcomitrium patens HOM05D001715 ORTHO05D004824 1.5e-37 161.0 257 38.5
Gorai.001G266500 Gossypium raimondii HOM05D001715 ORTHO05D004824 5.3e-35 152.5 138 57.2
Peaxi162Scf00700g00435 Petunia axillaris HOM05D001715 ORTHO05D004824 2.0e-34 150.6 228 43.9
Pp3c21_7830 Physcomitrium patens HOM05D001715 ORTHO05D004824 3.8e-33 146.4 257 36.6
EL10As9g23941 Beta vulgaris HOM05D001715 ORTHO05D004824 1.5e-32 144.4 113 67.3
SMO119G0416 Selaginella moellendorffii HOM05D001715 ORTHO05D004824 1.5e-32 144.4 261 38.3
SEGI_05213 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 4.2e-32 142.9 257 38.1
PSO478G2184 Papaver somniferum HOM05D001715 ORTHO05D004824 9.4e-32 141.7 126 56.3
Mapoly0074s0018 Marchantia polymorpha HOM05D001715 ORTHO05D004824 1.0e-30 138.3 257 37.7
Medtr7g033170 Medicago truncatula HOM05D001715 ORTHO05D004824 1.4e-30 137.9 130 56.2
AagrBONN_evm.TU.Sc2ySwM_344.5345 Anthoceros agrestis HOM05D001715 ORTHO05D004824 2.3e-30 137.1 165 48.5
vmacro18297 Vaccinium macrocarpon HOM05D001715 ORTHO05D004824 5.2e-30 136.0 82 79.3
C02p54270 Brassica napus HOM05D001715 ORTHO05D004824 1.5e-29 134.4 112 62.5
BolC2t11492H Brassica oleracea HOM05D001715 ORTHO05D004824 1.5e-29 134.4 112 62.5
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 1.7e-28 131.0 270 35.6
SEGI_27231 Sequoiadendron giganteum HOM05D001715 ORTHO05D004824 6.3e-28 129.0 134 53.0
Rhsim10G0017400 Rhododendron simsii HOM05D001715 ORTHO05D004824 5.4e-27 125.9 198 42.9
Cc07_g20220 Coffea canephora HOM05D001715 ORTHO05D004824 2.0e-26 124.0 241 37.8
SGA_v2.0_scaffold135G34914 Striga asiatica HOM05D001715 ORTHO05D004824 5.9e-26 122.5 170 44.1
Gohir.D07G231366 Gossypium hirsutum HOM05D001715 ORTHO05D004824 1.5e-24 117.9 89 65.2
CBR_g1018 Chara braunii HOM05D001161 ORTHO05D000497 1.2e-23 114.8 101 62.4
CiPaw.15G158300 Carya illinoinensis HOM05D001715 ORTHO05D004824 3.1e-19 100.1 63 76.2
Oeu021199.1 Olea europaea HOM05D001715 ORTHO05D004824 7.0e-19 99.0 74 67.6
CiPaw.15G157800 Carya illinoinensis HOM05D001715 ORTHO05D004824 7.8e-18 95.5 99 55.6
SGA_v2.0_scaffold131G34424 Striga asiatica HOM05D001715 ORTHO05D004824 3.3e-16 90.1 88 51.1
Oeu043035.1 Olea europaea HOM05D001715 ORTHO05D004824 1.8e-14 84.3 74 60.8
Mapoly0009s0091 Marchantia polymorpha HOM05D001715 ORTHO05D004824 9.2e-11 72.0 133 35.3
Oeu033726.1 Olea europaea HOM05D001715 ORTHO05D004824 5.0e-09 66.2 47 68.1
Aqoxy3G03035 Aquilegia oxysepala HOM05D001715 ORTHO05D004824 3.3e-08 63.5 71 43.7


User provided reference genes

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