Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim08G0004700 Rhododendron simsii HOM05D006162 ORTHO05D007627 0.0e+00 1355.1 648 100.0
CSS0015273 Camellia sinensis var. sinensis HOM05D006162 ORTHO05D007627 1.8e-191 673.3 655 56.6
Dinv05774 Davidia involucrata HOM05D006162 ORTHO05D007627 5.4e-191 671.8 656 55.5
TAR625G0476 Trochodendron aralioides HOM05D006162 ORTHO05D007627 1.8e-175 620.2 657 51.9
Cc07_g16680 Coffea canephora HOM05D006162 ORTHO05D007627 7.3e-164 581.6 665 49.0
QL06p031367 Quercus lobata HOM05D006162 ORTHO05D007627 1.3e-160 570.9 649 49.3
Nitab4.5_0000184g0020 Nicotiana tabacum HOM05D006162 ORTHO05D007627 6.4e-160 568.5 650 49.4
Cfa002788 Carpinus fangiana HOM05D006162 ORTHO05D007627 2.7e-158 563.1 649 49.2
Nitab4.5_0007426g0010 Nicotiana tabacum HOM05D006162 ORTHO05D007627 1.2e-153 547.7 650 48.6
Prupe.6G165900 Prunus persica HOM05D006162 ORTHO05D007627 5.4e-151 538.9 651 46.2
RcHm_v2.0_Chr2g0118111 Rosa chinensis HOM05D006162 ORTHO05D007627 9.2e-151 538.1 657 46.1
Manes.12G145600 Manihot esculenta HOM05D006162 ORTHO05D007627 1.6e-150 537.3 635 47.6
GSVIVG01022265001 Vitis vinifera HOM05D006162 ORTHO05D007627 7.8e-150 535.0 602 50.3
Ciclev10025253m.g Citrus clementina HOM05D006162 ORTHO05D007627 6.6e-149 531.9 653 47.6
Potri.007G077100 Populus trichocarpa HOM05D006162 ORTHO05D007627 1.1e-148 531.2 632 49.1
Thecc.07G145700 Theobroma cacao HOM05D006162 ORTHO05D007627 1.6e-147 527.3 655 47.3
TWI79G1464 Tripterygium wilfordii HOM05D006162 ORTHO05D007627 3.6e-147 526.2 645 46.8
vmacro18056 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 6.9e-146 521.9 381 69.6
CAN.G452.13 Capsicum annuum HOM05D006162 ORTHO05D007627 9.0e-146 521.5 650 47.4
Haze_25085 Corylus avellana HOM05D006162 ORTHO05D007627 3.4e-145 519.6 715 43.6
Gohir.D13G156100 Gossypium hirsutum HOM05D006162 ORTHO05D007627 3.8e-144 516.2 654 46.2
Gorai.013G176700 Gossypium raimondii HOM05D006162 ORTHO05D007627 1.4e-143 514.2 654 46.2
Gohir.A13G151700 Gossypium hirsutum HOM05D006162 ORTHO05D007627 2.1e-142 510.4 654 45.7
Sopen04g022820 Solanum pennellii HOM05D006162 ORTHO05D007627 4.3e-140 502.7 639 46.6
CiPaw.03G131500 Carya illinoinensis HOM05D006162 ORTHO05D007627 7.3e-140 501.9 644 46.4
FAN28G1724 Fragaria x ananassa HOM05D006162 ORTHO05D007627 2.1e-139 500.4 650 44.0
FAN23G1837 Fragaria x ananassa HOM05D006162 ORTHO05D007627 3.1e-138 496.5 650 43.5
HanXRQChr14g0446061 Helianthus annuus HOM05D006162 ORTHO05D007627 6.9e-138 495.4 659 44.6
Nn5g27123 Nelumbo nucifera HOM05D006162 ORTHO05D007627 4.5e-137 492.7 655 44.0
Lsat_1_v5_gn_2_67341 Lactuca sativa HOM05D006162 ORTHO05D007627 7.6e-137 491.9 657 44.7
COL.COLO4_17421 Corchorus olitorius HOM05D000398 ORTHO05D007627 1.7e-136 490.7 650 44.5
MD01G1015800 Malus domestica HOM05D006162 ORTHO05D007627 9.6e-132 474.9 652 44.3
Eucgr.H04890 Eucalyptus grandis HOM05D006162 ORTHO05D007627 1.6e-131 474.2 627 44.5
Glyma.08G145100 Glycine max HOM05D006162 ORTHO05D007627 2.8e-131 473.4 621 44.1
EL10Ac6g15232 Beta vulgaris HOM05D006162 ORTHO05D007627 1.4e-130 471.1 655 42.7
THA.LOC104824832 Tarenaya hassleriana HOM05D006162 ORTHO05D007627 6.4e-128 462.2 621 44.3
Glyma.05G186500 Glycine max HOM05D006162 ORTHO05D007627 4.2e-127 459.5 631 42.9
Peaxi162Scf00025g03226 Petunia axillaris HOM05D006162 ORTHO05D007627 4.2e-127 459.5 434 55.5
Migut.H02454 Erythranthe guttata HOM05D006162 ORTHO05D007627 7.9e-126 455.3 650 42.2
MBI17_g27203_MAGBIO Magnolia biondii HOM05D006162 ORTHO05D007627 7.9e-126 455.3 662 42.0
Hund19624 Selenicereus undatus HOM05D006162 ORTHO05D007627 6.7e-125 452.2 647 41.9
Phvul.002G267600 Phaseolus vulgaris HOM05D006162 ORTHO05D007627 5.6e-124 449.1 623 42.7
VMungo0251G2144 Vigna mungo HOM05D006162 ORTHO05D007627 3.7e-123 446.4 625 42.6
Ca_17673_v3 Cicer arietinum L. HOM05D006162 ORTHO05D007627 4.8e-123 446.0 629 41.5
Duzib187G0444 Durio zibethinus HOM05D006162 ORTHO05D007627 8.2e-123 445.3 463 51.8
arahy.Tifrunner.gnm1.ann1.2PK97N Arachis hypogaea HOM05D006162 ORTHO05D007627 1.1e-122 444.9 621 42.5
Solyc04g051410.4 Solanum lycopersicum HOM05D006162 ORTHO05D007627 1.1e-122 444.9 447 53.2
Lj4A860G2 Lonicera japonica HOM05D006162 ORTHO05D007627 4.0e-122 443.0 691 40.7
arahy.Tifrunner.gnm1.ann1.QP02N2 Arachis hypogaea HOM05D006162 ORTHO05D007627 5.3e-122 442.6 615 42.9
PGSC0003DMG400019694 Solanum tuberosum HOM05D006162 ORTHO05D007627 9.0e-122 441.8 430 54.7
vmacro18055 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 1.5e-121 441.0 270 81.1
ECA238G0813 Erigeron canadensis HOM05D006162 ORTHO05D007627 3.4e-121 439.9 579 44.6
CANSAT01G0187 Cannabis sativa HOM05D006162 ORTHO05D007627 4.5e-121 439.5 653 41.3
ClCG02G000880 Citrullus lanatus HOM05D006162 ORTHO05D007627 7.6e-121 438.7 616 43.0
Sabra07G0065000 Salix brachista HOM05D006162 ORTHO05D007627 6.5e-120 435.6 635 42.8
AUR62003642 Chenopodium quinoa HOM05D006162 ORTHO05D007627 4.2e-119 433.0 650 40.0
Nitab4.5_0005242g0040 Nicotiana tabacum HOM05D006162 ORTHO05D007627 2.7e-118 430.3 568 45.2
FvH4_1g23260 Fragaria vesca HOM05D006162 ORTHO05D007627 3.5e-118 429.9 520 45.4
TPR.G2184 Trifolium pratense HOM05D006162 ORTHO05D007627 1.8e-117 427.6 577 43.3
CsaV3_2G017830 Cucumis sativus L. HOM05D006162 ORTHO05D007627 5.7e-116 422.5 649 41.4
PSO675G6781 Papaver somniferum HOM05D006162 ORTHO05D007627 9.7e-116 421.8 828 35.1
PSO541G4150 Papaver somniferum HOM05D006162 ORTHO05D007627 3.7e-115 419.9 824 34.5
Medtr8g092350 Medicago truncatula HOM05D006162 ORTHO05D007627 6.9e-114 415.6 637 41.3
Sp7g36490 Schrenkiella parvula HOM05D006162 ORTHO05D007627 9.0e-114 415.2 622 39.5
Lj4g0017392 Lotus japonicus HOM05D006162 ORTHO05D007627 1.2e-113 414.8 624 40.5
Aqoxy6G00404 Aquilegia oxysepala HOM05D006162 ORTHO05D007627 2.0e-113 414.1 628 41.7
Ah.02g123760 Amaranthus hybridus HOM05D006162 ORTHO05D007627 2.6e-113 413.7 650 38.6
SGA_v2.0_scaffold2G01268 Striga asiatica HOM05D006162 ORTHO05D007627 1.7e-112 411.0 656 38.9
Thhalv10025021m.g Eutrema salsugineum HOM05D006162 ORTHO05D007627 2.2e-112 410.6 621 39.3
Psat7g049400 Pisum sativum HOM05D006162 ORTHO05D007627 9.3e-111 405.2 633 40.8
Sed0011946 Sechium edule HOM05D006162 ORTHO05D007627 4.6e-110 402.9 614 40.2
Oeu001984.1 Olea europaea HOM05D006162 ORTHO05D007627 6.1e-110 402.5 445 49.0
BcaC01g00286 Brassica carinata HOM05D006162 ORTHO05D007627 2.3e-109 400.6 613 38.7
C03p77810 Brassica napus HOM05D006162 ORTHO05D007627 3.9e-109 399.8 616 38.5
AT4G39370 Arabidopsis thaliana HOM05D006162 ORTHO05D007627 1.7e-107 394.4 621 39.6
BolC3t20037H Brassica oleracea HOM05D006162 ORTHO05D007627 3.7e-107 393.3 621 38.2
Carub.0007s0129 Capsella rubella HOM05D006162 ORTHO05D007627 4.8e-107 392.9 621 38.6
Aa31LG6G15910 Aethionema arabicum HOM05D006162 ORTHO05D007627 8.2e-107 392.1 618 39.6
BraA08t34318Z Brassica rapa HOM05D006162 ORTHO05D007627 1.4e-106 391.3 615 38.2
A08p23610 Brassica napus HOM05D006162 ORTHO05D007627 4.1e-106 389.8 615 38.0
BcaB03g12289 Brassica carinata HOM05D006162 ORTHO05D007627 5.9e-105 386.0 613 38.5
AL7G11390 Arabidopsis lyrata HOM05D006162 ORTHO05D007627 8.5e-104 382.1 624 38.8
Cpa.g.sc72.50 Carica papaya HOM05D006162 ORTHO05D007627 2.5e-103 380.6 447 45.9
Sc16g0004090 Simmondsia chinensis HOM05D006162 ORTHO05D007627 5.5e-103 379.4 447 46.3
unitig_899.g14618 Utricularia gibba HOM05D006162 ORTHO05D007627 9.4e-103 378.6 620 37.3
PGR102G2965 Punica granatum HOM05D006162 ORTHO05D007627 1.4e-101 374.8 624 37.8
Atru.chr4.714 Acer truncatum HOM05D006162 ORTHO05D007627 1.0e-96 358.6 429 46.9
ATR0584G096 Amborella trichopoda HOM05D006162 ORTHO05D007627 7.2e-95 352.4 657 36.7
DCAR_011465 Daucus carota HOM05D006162 ORTHO05D007627 1.7e-91 341.3 578 37.7
FAN26G3317 Fragaria x ananassa HOM05D006162 ORTHO05D007627 2.4e-90 337.4 415 46.7
Zm00001eb082910 Zea mays HOM05D006162 ORTHO05D007627 7.7e-89 332.4 633 37.4
CDE08G0720 Ceratophyllum demersum HOM05D006162 ORTHO05D007627 2.2e-88 330.9 438 43.8
Lalb_Chr13g0296311 Lupinus albus HOM05D006162 ORTHO05D007627 4.7e-86 323.2 424 43.2
FAN19G1907 Fragaria x ananassa HOM05D006162 ORTHO05D007627 5.7e-76 289.7 607 33.4
SEGI_22619 Sequoiadendron giganteum HOM05D006162 ORTHO05D007627 2.8e-70 270.8 736 29.9
HPP92_009257 Vanilla planifolia HOM05D006162 ORTHO05D007627 8.3e-67 259.2 442 37.3
AUR62017952 Chenopodium quinoa HOM05D006162 ORTHO05D007627 1.6e-65 255.0 646 30.0
Lj1g0016947 Lotus japonicus HOM05D006162 ORTHO05D007627 2.0e-65 254.6 443 37.2
Lj1g0027635 Lotus japonicus HOM05D006162 ORTHO05D007627 2.2e-59 234.6 262 45.8
Hma1.2p1_1688F.1_g297590 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 1.2e-57 228.8 173 61.8
CARHR247340 Cardamine hirsuta HOM05D006162 ORTHO05D007627 4.4e-52 210.3 313 39.9
MELO3C020973.2 Cucumis melo HOM05D006162 ORTHO05D007627 4.0e-45 187.2 274 41.6
Pp3c18_18540 Physcomitrium patens HOM05D006162 ORTHO05D007627 2.2e-43 181.4 727 26.1
Atru.chr4.715 Acer truncatum HOM05D006162 ORTHO05D007627 2.1e-41 174.9 230 46.1
Mapoly0008s0182 Marchantia polymorpha HOM05D006162 ORTHO05D007627 1.1e-39 169.1 595 27.9
AUR62044023 Chenopodium quinoa HOM05D006162 ORTHO05D007627 6.8e-37 159.8 305 34.4
SMO340G0295 Selaginella moellendorffii HOM05D006162 ORTHO05D007627 1.0e-32 146.0 584 24.7
CBR_g28670 Chara braunii HOM05D006162 ORTHO05D007627 1.2e-28 132.5 398 25.9
Nn5g27122 Nelumbo nucifera HOM05D006162 ORTHO05D007627 2.6e-28 131.3 201 42.3
Cpa.g.sc72.51 Carica papaya HOM05D006162 ORTHO05D000563 3.4e-28 131.0 202 43.6
Lalb_Chr13g0296301 Lupinus albus HOM05D006162 ORTHO05D007627 3.4e-28 131.0 216 40.3
Hma1.2p1_0220F.1_g092940 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 1.9e-26 125.2 150 48.7
Peaxi162Scf00025g03225 Petunia axillaris HOM05D006162 ORTHO05D007627 1.9e-26 125.2 138 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1435 Anthoceros agrestis HOM05D006162 ORTHO05D007627 1.9e-23 115.2 408 25.2
Sc16g0004080 Simmondsia chinensis HOM05D006162 ORTHO05D007627 5.6e-23 113.6 137 50.4
Hma1.2p1_0220F.1_g092950 Hydrangea macrophylla HOM05D006162 ORTHO05D007627 1.8e-21 108.6 74 68.9
Solyc04g051400.2 Solanum lycopersicum HOM05D006162 ORTHO05D007627 5.4e-18 97.1 129 47.3
Zm00001eb159190 Zea mays HOM05D006162 ORTHO05D007627 2.3e-16 91.7 194 34.0
arahy.Tifrunner.gnm1.ann1.NX5YGM Arachis hypogaea HOM05D006162 ORTHO05D007627 1.1e-15 89.4 79 57.0
DCAR_011464 Daucus carota HOM05D006162 ORTHO05D007627 6.2e-14 83.6 77 57.1
Lj1g0005085 Lotus japonicus HOM05D006162 ORTHO05D007627 1.1e-13 82.8 107 41.1
arahy.Tifrunner.gnm1.ann1.PN8NU7 Arachis hypogaea HOM05D006162 ORTHO05D007627 1.4e-13 82.4 71 59.2
vmacro18645 Vaccinium macrocarpon HOM05D006162 ORTHO05D007627 6.9e-13 80.1 88 58.0
arahy.Tifrunner.gnm1.ann1.RXB70W Arachis hypogaea HOM05D005572 ORTHO05D007627 2.9e-11 74.7 76 47.4
arahy.Tifrunner.gnm1.ann1.1RFJ6T Arachis hypogaea HOM05D005572 ORTHO05D007627 6.4e-11 73.6 50 66.0
Nn5g28803 Nelumbo nucifera HOM05D006162 ORTHO05D007627 7.9e-09 66.6 98 39.8
Os04g0429200 Oryza sativa ssp. japonica HOM05D006162 ORTHO05D007627 1.8e-08 65.5 110 41.8
Oeu049032.1 Olea europaea HOM05D003912 ORTHO05D004409 1.5e-07 62.4 74 45.9
Sabra17G0047100 Salix brachista HOM05D003912 ORTHO05D004409 7.4e-07 60.1 80 41.2
SEGI_05196 Sequoiadendron giganteum HOM05D003912 ORTHO05D004409 7.4e-07 60.1 82 41.5
Potri.017G055600 Populus trichocarpa HOM05D003912 ORTHO05D004409 9.6e-07 59.7 81 40.7
arahy.Tifrunner.gnm1.ann1.2BAE9R Arachis hypogaea HOM05D003912 ORTHO05D004409 1.3e-06 59.3 80 42.5
Nitab4.5_0003502g0040 Nicotiana tabacum HOM05D003912 ORTHO05D004409 1.3e-06 59.3 75 42.7
Atru.chr1.1293 Acer truncatum HOM05D001091 ORTHO05D001020 1.6e-06 58.9 81 35.8
AT2G32780 Arabidopsis thaliana HOM05D003912 ORTHO05D004409 1.6e-06 58.9 76 46.1
Duzib212G0883 Durio zibethinus HOM05D003912 ORTHO05D004409 1.6e-06 58.9 78 43.6
arahy.Tifrunner.gnm1.ann1.1SB5R1 Arachis hypogaea HOM05D003912 ORTHO05D004409 2.1e-06 58.5 80 42.5
Oeu055784.1 Olea europaea HOM05D003912 ORTHO05D004409 2.1e-06 58.5 72 43.1
Aqoxy7G00006 Aquilegia oxysepala HOM05D001091 ORTHO05D001020 3.7e-06 57.8 82 32.9
Carub.0004s1415 Capsella rubella HOM05D003912 ORTHO05D004409 3.7e-06 57.8 76 46.1
AUR62002661 Chenopodium quinoa HOM05D001091 ORTHO05D001020 3.7e-06 57.8 81 34.6
Glyma.11G256600 Glycine max HOM05D003912 ORTHO05D004409 3.7e-06 57.8 80 41.2
Manes.15G054100 Manihot esculenta HOM05D003912 ORTHO05D004409 3.7e-06 57.8 77 42.9
PSO063G1798 Papaver somniferum HOM05D001091 ORTHO05D001020 3.7e-06 57.8 81 37.0
PSO782G3112 Papaver somniferum HOM05D001091 ORTHO05D001020 3.7e-06 57.8 81 37.0
CAN.G212.11 Capsicum annuum HOM05D006162 ORTHO05D007627 4.8e-06 57.4 93 41.9
ECA233G4597 Erigeron canadensis HOM05D003912 ORTHO05D004409 4.8e-06 57.4 75 42.7
Medtr3g083600 Medicago truncatula HOM05D003912 ORTHO05D004409 4.8e-06 57.4 79 41.8
Os09g0505100 Oryza sativa ssp. japonica HOM05D003912 ORTHO05D004409 4.8e-06 57.4 80 41.2
RcHm_v2.0_Chr3g0494551 Rosa chinensis HOM05D001091 ORTHO05D001020 4.8e-06 57.4 82 36.6
Sc17g0004620 Simmondsia chinensis HOM05D001091 ORTHO05D001020 4.8e-06 57.4 81 33.3
Zm00001eb102350 Zea mays HOM05D003912 ORTHO05D004409 4.8e-06 57.4 75 45.3
BcaB03g13468 Brassica carinata HOM05D003912 ORTHO05D004409 6.2e-06 57.0 77 39.0
BolC4t23225H Brassica oleracea HOM05D003912 ORTHO05D004409 6.2e-06 57.0 74 43.2
Carub.0001s0410 Capsella rubella HOM05D003912 ORTHO05D004409 6.2e-06 57.0 74 41.9
Ca_16382_v3 Cicer arietinum L. HOM05D003912 ORTHO05D004409 6.2e-06 57.0 79 41.8
Migut.N00688 Erythranthe guttata HOM05D001091 ORTHO05D001020 6.2e-06 57.0 77 36.4
Glyma.18G000500 Glycine max HOM05D003912 ORTHO05D004409 6.2e-06 57.0 80 41.2
TPR.G19333 Trifolium pratense HOM05D003912 ORTHO05D004409 6.2e-06 57.0 79 41.8
FvH4_4g16490 Fragaria vesca HOM05D003912 ORTHO05D004409 8.2e-06 56.6 80 42.5
Gohir.D02G124000 Gossypium hirsutum HOM05D003912 ORTHO05D004409 8.2e-06 56.6 76 43.4
Gorai.005G130100 Gossypium raimondii HOM05D003912 ORTHO05D004409 8.2e-06 56.6 76 43.4
Phvul.001G268800 Phaseolus vulgaris HOM05D003912 ORTHO05D004409 8.2e-06 56.6 76 40.8
QL07p013120 Quercus lobata HOM05D001091 ORTHO05D001020 8.2e-06 56.6 83 34.9
THA.LOC104801027 Tarenaya hassleriana HOM05D003912 ORTHO05D004409 8.2e-06 56.6 77 41.6


User provided reference genes

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