Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0222700 Rhododendron simsii HOM05D004532 ORTHO05D000028 3.0e-111 405.2 205 100.0
Actinidia38089 Actinidia chinensis HOM05D000042 ORTHO05D000028 2.0e-35 153.3 273 42.5
GSVIVG01009393001 Vitis vinifera HOM05D001837 ORTHO05D000028 3.8e-34 149.1 273 40.7
Dinv35909 Davidia involucrata HOM05D001837 ORTHO05D000028 1.8e-31 140.2 275 38.9
Peaxi162Scf00848g00319 Petunia axillaris HOM05D004532 ORTHO05D000028 8.2e-29 131.3 302 34.1
MSTRG.1048 Avicennia marina HOM05D000042 ORTHO05D000028 1.7e-26 123.6 281 36.3
Manes.18G043300 Manihot esculenta HOM05D000042 ORTHO05D000028 1.1e-25 120.9 273 34.1
Oeu061838.1 Olea europaea HOM05D000042 ORTHO05D000028 1.1e-25 120.9 276 34.8
Solyc04g078300.3 Solanum lycopersicum HOM05D000042 ORTHO05D000028 5.5e-25 118.6 297 32.3
Sopen04g031890 Solanum pennellii HOM05D000042 ORTHO05D000028 5.5e-25 118.6 298 32.9
Migut.C00517 Erythranthe guttata HOM05D000042 ORTHO05D000028 3.6e-24 115.9 274 36.5
CAN.G1054.7 Capsicum annuum HOM05D000042 ORTHO05D000028 1.4e-23 114.0 303 33.0
Actinidia08265 Actinidia chinensis HOM05D001837 ORTHO05D000028 2.3e-23 113.2 195 44.1
Cc10_g05320 Coffea canephora HOM05D001837 ORTHO05D000028 4.4e-22 109.0 76 73.7
Duzib116G0629 Durio zibethinus HOM05D004532 ORTHO05D000028 5.7e-22 108.6 285 32.6
Oeu040891.2 Olea europaea HOM05D000042 ORTHO05D000028 1.8e-20 103.6 256 33.6
Ciclev10001730m.g Citrus clementina HOM05D001837 ORTHO05D000028 1.6e-19 100.5 277 30.3
Hma1.2p1_0923F.1_g237150 Hydrangea macrophylla HOM05D000042 ORTHO05D000028 3.8e-18 95.9 242 34.3
Lsat_1_v5_gn_6_109820 Lactuca sativa HOM05D001837 ORTHO05D000028 3.8e-18 95.9 244 33.2
Gohir.D02G089900 Gossypium hirsutum HOM05D000042 ORTHO05D000028 6.5e-18 95.1 78 64.1
Nitab4.5_0000934g0190 Nicotiana tabacum HOM05D000042 ORTHO05D000028 1.5e-17 94.0 305 29.8
HanXRQChr05g0150571 Helianthus annuus HOM05D001837 ORTHO05D000028 2.5e-17 93.2 89 57.3
ECA246G0663 Erigeron canadensis HOM05D000086 ORTHO05D002912 3.2e-17 92.8 89 55.1
Gorai.005G100600 Gossypium raimondii HOM05D000042 ORTHO05D000028 1.6e-16 90.5 78 64.1
HanXRQChr15g0483111 Helianthus annuus HOM05D001837 ORTHO05D000028 1.4e-15 87.4 90 56.7
Lj1g0023377 Lotus japonicus HOM05D000042 ORTHO05D000028 4.0e-15 85.9 76 59.2
Gorai.009G216900 Gossypium raimondii HOM05D000042 ORTHO05D000028 6.8e-15 85.1 76 56.6
Gohir.A05G207000 Gossypium hirsutum HOM05D000042 ORTHO05D000028 2.6e-14 83.2 76 57.9
Medtr3g102570 Medicago truncatula HOM05D001837 ORTHO05D000028 4.4e-14 82.4 88 51.1
Nitab4.5_0007275g0010 Nicotiana tabacum HOM05D000042 ORTHO05D000028 4.4e-14 82.4 304 28.6
Thecc.08G094200 Theobroma cacao HOM05D004532 ORTHO05D000028 4.4e-14 82.4 277 28.2
Ca_15922_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000028 5.7e-14 82.0 88 52.3
Cfa018031 Carpinus fangiana HOM05D004532 ORTHO05D000028 1.7e-13 80.5 58 70.7
Psat5g040360 Pisum sativum HOM05D000042 ORTHO05D000028 1.1e-12 77.8 88 45.5
TPR.G25555 Trifolium pratense HOM05D000042 ORTHO05D000028 1.4e-12 77.4 88 50.0
Glyma.04G043800 Glycine max HOM05D000042 ORTHO05D000028 3.1e-12 76.3 88 47.7
TWI56G1245 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 2.7e-11 73.2 79 49.4
CANSAT25G2386 Cannabis sativa HOM05D000042 ORTHO05D000028 2.9e-10 69.7 78 48.7
TAR625G1000 Trochodendron aralioides HOM05D001837 ORTHO05D000028 2.9e-10 69.7 267 28.5
Nn1g08850 Nelumbo nucifera HOM05D004532 ORTHO05D000028 5.0e-10 68.9 76 51.3
Lj4A761T86 Lonicera japonica HOM05D004532 ORTHO05D000028 6.6e-10 68.6 71 54.9
Aqoxy6G00549 Aquilegia oxysepala HOM05D004532 ORTHO05D000028 1.1e-09 67.8 76 46.1
CSS0046201 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 1.5e-09 67.4 195 36.4
Nn5g30466 Nelumbo nucifera HOM05D000042 ORTHO05D000028 1.9e-09 67.0 78 46.2
HPP92_019236 Vanilla planifolia HOM05D004532 ORTHO05D000028 1.6e-08 63.9 76 47.4
PGR083G1161 Punica granatum HOM05D001837 ORTHO05D000028 2.8e-08 63.2 85 45.9
Sed0009551 Sechium edule HOM05D004532 ORTHO05D000028 6.1e-08 62.0 76 44.7
GSVIVG01022182001 Vitis vinifera HOM05D004532 ORTHO05D000028 6.1e-08 62.0 76 47.4
CSS0035363 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 2.3e-07 60.1 172 34.9
CsaV3_4G030750 Cucumis sativus L. HOM05D004532 ORTHO05D000028 3.0e-07 59.7 76 43.4
PSO210G0302 Papaver somniferum HOM05D004532 ORTHO05D000028 4.0e-07 59.3 94 39.4
PSO447G0055 Papaver somniferum HOM05D004532 ORTHO05D000028 4.0e-07 59.3 94 39.4
PGR102G2915 Punica granatum HOM05D004532 ORTHO05D000028 4.0e-07 59.3 76 43.4
Dinv21942 Davidia involucrata HOM05D004532 ORTHO05D000028 5.2e-07 58.9 89 38.2
FAN04G1122 Fragaria x ananassa HOM05D004532 ORTHO05D000028 6.8e-07 58.5 87 36.8
FAN13G0077 Fragaria x ananassa HOM05D004532 ORTHO05D000028 6.8e-07 58.5 87 36.8
FAN18G3338 Fragaria x ananassa HOM05D004532 ORTHO05D000028 6.8e-07 58.5 87 36.8
AT1G77950 Arabidopsis thaliana HOM05D004532 ORTHO05D000028 8.9e-07 58.2 102 36.3
arahy.Tifrunner.gnm1.ann1.XXIH72 Arachis hypogaea HOM05D004532 ORTHO05D000028 8.9e-07 58.2 76 42.1
Zm00001eb372610 Zea mays HOM05D004532 ORTHO05D000028 8.9e-07 58.2 95 37.9
CiPaw.15G048700 Carya illinoinensis HOM05D000042 ORTHO05D000028 1.5e-06 57.4 89 46.1
AL2G38220 Arabidopsis lyrata HOM05D004532 ORTHO05D000028 2.6e-06 56.6 102 35.3
AL2G41850 Arabidopsis lyrata HOM05D004532 ORTHO05D000028 2.6e-06 56.6 102 35.3
THA.LOC104800165 Tarenaya hassleriana HOM05D004532 ORTHO05D000028 2.6e-06 56.6 101 36.6
MELO3C008942.2 Cucumis melo HOM05D004532 ORTHO05D000028 3.4e-06 56.2 87 37.9
SGA_v2.0_scaffold26G11297 Striga asiatica HOM05D000042 ORTHO05D000028 3.4e-06 56.2 199 29.1
DCAR_001023 Daucus carota HOM05D004532 ORTHO05D000028 4.4e-06 55.8 76 42.1
Lj1g0009703 Lotus japonicus HOM05D004532 ORTHO05D000028 5.7e-06 55.5 87 36.8
BolC7t42699H Brassica oleracea HOM05D004532 ORTHO05D000028 7.5e-06 55.1 98 37.8
CANSAT01G2070 Cannabis sativa HOM05D004532 ORTHO05D000028 9.8e-06 54.7 76 38.2
Duzib264G0945 Durio zibethinus HOM05D004532 ORTHO05D000028 9.8e-06 54.7 89 38.2
Manes.13G090200 Manihot esculenta HOM05D004532 ORTHO05D000028 9.8e-06 54.7 76 42.1
PSO675G3764 Papaver somniferum HOM05D000042 ORTHO05D000028 9.8e-06 54.7 92 37.0
Sc03g0002290 Simmondsia chinensis HOM05D004532 ORTHO05D000028 9.8e-06 54.7 77 40.3


User provided reference genes

Program Settings