Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0181500 Rhododendron simsii HOM05D004707 ORTHO05D005837 0.0e+00 1144.8 581 100.0
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 1.5e-46 191.8 405 35.1
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 2.3e-44 184.5 414 33.8
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 6.8e-44 183.0 405 33.8
Rhsim01G0164800 Rhododendron simsii HOM05D004707 ORTHO05D005837 2.8e-42 177.6 381 34.1
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 4.5e-40 170.2 411 32.4
Sopen10g005800 Solanum pennellii HOM05D004707 ORTHO05D005837 1.0e-39 169.1 416 32.0
Peaxi162Scf00585g00318 Petunia axillaris HOM05D004707 ORTHO05D005837 2.3e-39 167.9 416 31.0
PGR031G2856 Punica granatum HOM05D004707 ORTHO05D005837 2.3e-39 167.9 408 31.4
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 6.6e-39 166.4 408 33.1
vmacro20909 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 6.6e-39 166.4 408 32.4
Cc00_g17840 Coffea canephora HOM05D004707 ORTHO05D005837 8.6e-39 166.0 407 31.9
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 8.6e-39 166.0 414 32.1
Solyc10g012060.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 3.3e-38 164.1 417 31.9
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 4.2e-38 163.7 416 31.0
vmacro13252 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 5.5e-38 163.3 421 31.4
FAN10G2784 Fragaria x ananassa HOM05D004707 ORTHO05D005837 7.2e-38 162.9 410 32.7
FAN06G2758 Fragaria x ananassa HOM05D004707 ORTHO05D005837 9.5e-38 162.5 418 32.1
FAN10G1283 Fragaria x ananassa HOM05D004707 ORTHO05D005837 9.5e-38 162.5 410 32.7
FAN03G0218 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.2e-37 162.2 410 32.4
FvH4_7g15010 Fragaria vesca HOM05D004707 ORTHO05D005837 1.6e-37 161.8 410 32.4
CAN.G91.14 Capsicum annuum HOM05D004707 ORTHO05D005837 2.1e-37 161.4 416 31.0
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 4.7e-37 160.2 410 32.2
FAN01G2554 Fragaria x ananassa HOM05D004707 ORTHO05D005837 6.1e-37 159.8 410 32.4
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 6.1e-37 159.8 408 31.9
RcHm_v2.0_Chr1g0357041 Rosa chinensis HOM05D004707 ORTHO05D005837 1.0e-36 159.1 418 31.8
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 1.0e-36 159.1 420 30.5
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 2.3e-36 157.9 403 31.3
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 2.3e-36 157.9 380 32.4
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 4.0e-36 157.1 409 31.1
Manes.01G254000 Manihot esculenta HOM05D004707 ORTHO05D005837 5.2e-36 156.8 418 29.7
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 5.2e-36 156.8 408 31.4
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 1.2e-35 155.6 414 31.4
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 2.6e-35 154.5 409 30.6
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 2.6e-35 154.5 420 29.8
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 3.4e-35 154.1 415 31.1
COL.COLO4_12751 Corchorus olitorius HOM05D004707 ORTHO05D005837 5.7e-35 153.3 408 30.1
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 5.7e-35 153.3 408 29.9
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 7.5e-35 152.9 414 30.7
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 1.7e-34 151.8 413 30.5
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 1.7e-34 151.8 413 30.0
Sc06g0007250 Simmondsia chinensis HOM05D004707 ORTHO05D005837 1.7e-34 151.8 394 30.2
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 2.2e-34 151.4 413 30.0
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 4.9e-34 150.2 413 30.3
CANSAT56G0368 Cannabis sativa HOM05D004707 ORTHO05D005837 4.9e-34 150.2 404 30.4
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 4.9e-34 150.2 408 30.1
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 2.4e-33 147.9 408 30.4
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 2.4e-33 147.9 408 29.9
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.6e-32 145.2 408 29.9
unitig_26.g9294 Utricularia gibba HOM05D004707 ORTHO05D005837 1.6e-32 145.2 390 30.3
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 2.0e-32 144.8 390 31.0
Aqoxy5G00593 Aquilegia oxysepala HOM05D004707 ORTHO05D005837 2.7e-32 144.4 407 30.5
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 4.5e-32 143.7 413 29.3
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 5.9e-32 143.3 414 29.2
ATR0661G226 Amborella trichopoda HOM05D004707 ORTHO05D005837 7.8e-32 142.9 408 29.9
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 7.8e-32 142.9 414 29.5
Sopen10g005790 Solanum pennellii HOM05D004707 ORTHO05D005837 7.8e-32 142.9 416 29.1
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 2.3e-31 141.4 414 29.0
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 5.0e-31 140.2 408 28.7
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 6.6e-31 139.8 402 29.9
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 6.6e-31 139.8 411 30.7
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 6.6e-31 139.8 390 30.3
CsaV3_3G008770 Cucumis sativus L. HOM05D004707 ORTHO05D005837 8.6e-31 139.4 408 28.4
Solyc10g012050.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 8.6e-31 139.4 414 28.7
MELO3C006094.2 Cucumis melo HOM05D004707 ORTHO05D005837 7.3e-30 136.3 408 27.9
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 7.3e-30 136.3 411 29.9
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 9.5e-30 136.0 391 30.7
DCAR_008625 Daucus carota HOM05D001113 ORTHO05D000968 9.5e-30 136.0 413 29.3
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 1.2e-29 135.6 391 30.7
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 1.2e-29 135.6 408 28.2
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 1.6e-29 135.2 391 30.7
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 1.6e-29 135.2 391 30.7
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 2.1e-29 134.8 391 30.7
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 2.8e-29 134.4 391 30.4
Sed0023991 Sechium edule HOM05D004707 ORTHO05D005837 6.1e-29 133.3 417 27.6
Ah.05g180290 Amaranthus hybridus HOM05D004707 ORTHO05D005837 1.8e-28 131.7 410 28.0
ECA234G0026 Erigeron canadensis HOM05D004707 ORTHO05D005837 2.3e-28 131.3 410 29.3
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 3.1e-28 131.0 407 28.5
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 5.2e-28 130.2 350 30.0
EL10Ac1g00374 Beta vulgaris HOM05D004707 ORTHO05D005837 6.8e-28 129.8 416 26.7
Carub.0006s3698 Capsella rubella HOM05D004707 ORTHO05D005837 1.2e-27 129.0 404 28.2
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 2.6e-27 127.9 407 28.3
Gohir.A12G107750 Gossypium hirsutum HOM05D004707 ORTHO05D005837 5.8e-27 126.7 406 29.1
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 9.8e-27 125.9 387 30.0
Psat4g156520 Pisum sativum HOM05D004707 ORTHO05D005837 2.2e-26 124.8 290 32.8
Rhsim07G0012400 Rhododendron simsii HOM05D004707 ORTHO05D005837 2.9e-26 124.4 415 27.7
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 4.9e-26 123.6 390 28.7
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 8.3e-26 122.9 407 26.3
Hund16663 Selenicereus undatus HOM05D004707 ORTHO05D005837 1.4e-25 122.1 417 27.6
Atru.chr5.540 Acer truncatum HOM05D004707 ORTHO05D005837 2.0e-24 118.2 278 32.0
AUR62004395 Chenopodium quinoa HOM05D004707 ORTHO05D005837 3.5e-24 117.5 415 27.0
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 3.5e-24 117.5 428 26.6
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 1.3e-23 115.5 408 27.0
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 3.0e-23 114.4 318 29.2
TPR.G14976 Trifolium pratense HOM05D004707 ORTHO05D005837 3.0e-23 114.4 277 33.2
AUR62022601 Chenopodium quinoa HOM05D004707 ORTHO05D005837 8.6e-23 112.8 417 27.1
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 8.6e-23 112.8 410 26.8
Migut.B01788 Erythranthe guttata HOM05D004707 ORTHO05D005837 3.3e-22 110.9 412 29.1
Peaxi162Scf00020g01222 Petunia axillaris HOM05D004707 ORTHO05D005837 3.3e-22 110.9 343 30.3
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 4.3e-22 110.5 402 25.4
ClCG05G001380 Citrullus lanatus HOM05D004707 ORTHO05D005837 5.6e-22 110.2 407 25.8
Cpa.g.sc11.45 Carica papaya HOM05D004707 ORTHO05D005837 1.6e-21 108.6 277 31.0
vmacro20907 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 1.2e-19 102.4 413 28.1
Pp3c10_20950 Physcomitrium patens HOM05D004707 ORTHO05D005837 2.0e-19 101.7 427 25.8
Mapoly0001s0022 Marchantia polymorpha HOM05D004707 ORTHO05D005837 3.4e-19 100.9 416 26.4
Nitab4.5_0000200g0180 Nicotiana tabacum HOM05D004707 ORTHO05D005837 5.8e-19 100.1 168 35.1
Nn6g33309 Nelumbo nucifera HOM05D004707 ORTHO05D005837 3.7e-18 97.4 428 24.1
MD01G1068400 Malus domestica HOM05D004707 ORTHO05D005837 5.4e-17 93.6 240 33.8
CDE04G1515 Ceratophyllum demersum HOM05D004707 ORTHO05D005837 2.3e-15 88.2 218 31.2
SGA_v2.0_scaffold95G28817 Striga asiatica HOM05D004707 ORTHO05D005837 6.6e-15 86.7 175 33.7
SMO116G0175 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 4.7e-13 80.5 402 22.9
Pp3c9_20150 Physcomitrium patens HOM05D004707 ORTHO05D005837 8.9e-12 76.3 294 26.5
CSS0018256 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 4.9e-10 70.5 121 35.5
Atru.ctg942.22 Acer truncatum HOM05D004707 ORTHO05D005837 1.4e-09 68.9 311 25.7
AT4G00234 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 4.1e-09 67.4 184 28.8
Pp3c15_19020 Physcomitrium patens HOM05D004707 ORTHO05D005837 4.1e-09 67.4 296 24.7
SEGI_13365 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 1.6e-08 65.5 163 30.1
Hma1.2p1_0071F.1_g037910 Hydrangea macrophylla HOM05D004707 ORTHO05D005837 2.1e-08 65.1 66 47.0
AagrBONN_evm.TU.Sc2ySwM_344.1481 Anthoceros agrestis HOM05D004707 ORTHO05D005837 4.6e-08 63.9 229 30.1
Cpa.g.sc11.48 Carica papaya HOM05D004707 ORTHO05D005837 1.7e-07 62.0 63 49.2
CSS0034255 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 5.1e-07 60.5 122 31.1
TWI75G0872 Tripterygium wilfordii HOM05D000047 ORTHO05D000044 8.6e-07 59.7 72 43.1
CSS0017015 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 1.1e-06 59.3 75 37.3
CSS0011560 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 1.5e-06 58.9 137 29.9
CSS0012345 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 1.5e-06 58.9 122 31.1
CSS0024428 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 1.5e-06 58.9 122 30.3
CSS0033312 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 4.3e-06 57.4 122 30.3
CSS0002461 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 5.6e-06 57.0 123 33.3
CSS0040660 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 7.3e-06 56.6 75 36.0
ECA247G0879 Erigeron canadensis HOM05D000047 ORTHO05D000044 7.3e-06 56.6 146 27.4
CSS0033775 Camellia sinensis var. sinensis HOM05D000047 ORTHO05D000044 9.6e-06 56.2 73 43.8
TWI81G0819 Tripterygium wilfordii HOM05D000047 ORTHO05D000044 9.6e-06 56.2 123 30.9


User provided reference genes

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