Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0173800 Rhododendron simsii HOM05D003985 ORTHO05D005253 0.0e+00 1385.9 677 100.0
Actinidia14151 Actinidia chinensis HOM05D003985 ORTHO05D005253 1.9e-255 885.9 497 87.1
vmacro05088 Vaccinium macrocarpon HOM05D003985 ORTHO05D005253 1.9e-247 859.4 784 61.5
CSS0024851 Camellia sinensis var. sinensis HOM05D003985 ORTHO05D005253 2.6e-244 849.0 497 84.1
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.6e-241 839.7 497 82.9
Dinv37477 Davidia involucrata HOM05D003985 ORTHO05D005253 1.9e-239 832.8 497 82.7
Hma1.2p1_0214F.1_g090700 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 8.0e-238 827.4 497 81.5
TAR625G0977 Trochodendron aralioides HOM05D003985 ORTHO05D005253 5.2e-237 824.7 499 81.6
GSVIVG01035593001 Vitis vinifera HOM05D003985 ORTHO05D005253 1.7e-235 819.7 497 81.9
Nn7g37851 Nelumbo nucifera HOM05D003985 ORTHO05D005253 5.3e-234 814.7 497 80.1
Aqoxy7G02572 Aquilegia oxysepala HOM05D003985 ORTHO05D005253 2.2e-232 809.3 527 76.9
QL12p024588 Quercus lobata HOM05D003985 ORTHO05D005253 1.2e-230 803.5 529 76.4
Atru.chr7.2713 Acer truncatum HOM05D003985 ORTHO05D005253 8.0e-230 800.8 527 76.5
PSO455G0188 Papaver somniferum HOM05D003985 ORTHO05D005253 3.0e-229 798.9 499 78.2
CiPaw.08G017300 Carya illinoinensis HOM05D003985 ORTHO05D005253 2.6e-228 795.8 497 79.5
Potri.018G000500 Populus trichocarpa HOM05D003985 ORTHO05D005253 9.8e-228 793.9 527 74.6
Cfa013241 Carpinus fangiana HOM05D003985 ORTHO05D005253 3.7e-227 792.0 527 75.3
PSO170G0668 Papaver somniferum HOM05D003985 ORTHO05D005253 1.4e-226 790.0 499 77.8
Cc07_g19480 Coffea canephora HOM05D003985 ORTHO05D005253 2.4e-226 789.3 497 77.9
Sabra18G0005700 Salix brachista HOM05D003985 ORTHO05D005253 2.4e-226 789.3 528 74.4
Sc06g0000030 Simmondsia chinensis HOM05D003985 ORTHO05D005253 5.4e-226 788.1 497 77.5
Sc06g0001350 Simmondsia chinensis HOM05D003985 ORTHO05D005253 5.4e-226 788.1 497 77.5
Hund03241 Selenicereus undatus HOM05D003985 ORTHO05D005253 1.6e-225 786.6 575 69.4
Thecc.09G001600 Theobroma cacao HOM05D003985 ORTHO05D005253 2.0e-225 786.2 497 76.1
Manes.12G085100 Manihot esculenta HOM05D003985 ORTHO05D005253 3.5e-225 785.4 497 77.5
HanXRQChr03g0082341 Helianthus annuus HOM05D003985 ORTHO05D005253 1.3e-224 783.5 516 75.4
DCAR_001159 Daucus carota HOM05D003985 ORTHO05D005253 3.8e-224 781.9 527 74.8
arahy.Tifrunner.gnm1.ann1.S977N0 Arachis hypogaea HOM05D003985 ORTHO05D005253 6.5e-224 781.2 528 75.4
arahy.Tifrunner.gnm1.ann1.66HY6B Arachis hypogaea HOM05D003985 ORTHO05D005253 8.6e-224 780.8 528 75.2
Nitab4.5_0000860g0110 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.5e-223 780.0 501 76.6
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 5.5e-223 778.1 497 76.3
CiPaw.07G215500 Carya illinoinensis HOM05D003985 ORTHO05D005253 1.6e-222 776.5 498 77.3
Gohir.A07G001000 Gossypium hirsutum HOM05D003985 ORTHO05D005253 2.1e-222 776.2 527 72.5
MSTRG.13931 Avicennia marina HOM05D003985 ORTHO05D005253 4.7e-222 775.0 497 76.5
Prupe.1G463300 Prunus persica HOM05D003985 ORTHO05D005253 4.7e-222 775.0 497 76.3
Gorai.001G001100 Gossypium raimondii HOM05D003985 ORTHO05D005253 6.1e-222 774.6 527 72.1
ECA240G2540 Erigeron canadensis HOM05D003985 ORTHO05D005253 8.0e-222 774.2 497 76.7
Eucgr.D02618 Eucalyptus grandis HOM05D003985 ORTHO05D005253 8.0e-222 774.2 527 73.2
FAN24G2613 Fragaria x ananassa HOM05D003985 ORTHO05D005253 1.0e-221 773.9 497 75.9
MD08G1132700 Malus domestica HOM05D003985 ORTHO05D005253 1.4e-221 773.5 527 73.6
CAN.G940.15 Capsicum annuum HOM05D003985 ORTHO05D005253 4.0e-221 771.9 500 76.2
Haze_21675 Corylus avellana HOM05D003985 ORTHO05D005253 6.8e-221 771.2 574 69.5
FAN15G3026 Fragaria x ananassa HOM05D003985 ORTHO05D005253 2.6e-220 769.2 497 75.7
Peaxi162Scf00045g01452 Petunia axillaris HOM05D003985 ORTHO05D005253 2.6e-220 769.2 500 76.2
Lj1g0007461 Lotus japonicus HOM05D003985 ORTHO05D005253 3.4e-220 768.8 519 73.8
Sopen08g001940 Solanum pennellii HOM05D003985 ORTHO05D005253 3.4e-220 768.8 501 75.8
Solyc08g005970.3 Solanum lycopersicum HOM05D003985 ORTHO05D005253 4.4e-220 768.5 501 75.6
Glyma.04G074200 Glycine max HOM05D003985 ORTHO05D005253 5.7e-220 768.1 527 73.8
Gohir.D07G001400 Gossypium hirsutum HOM05D003985 ORTHO05D005253 5.7e-220 768.1 527 71.7
Lsat_1_v5_gn_5_59301 Lactuca sativa HOM05D003985 ORTHO05D005253 2.2e-219 766.1 499 75.6
THA.LOC104803893 Tarenaya hassleriana HOM05D003985 ORTHO05D005253 3.7e-219 765.4 527 72.3
Ciclev10007631m.g Citrus clementina HOM05D003985 ORTHO05D005253 6.3e-219 764.6 579 68.2
RcHm_v2.0_Chr6g0312391 Rosa chinensis HOM05D003985 ORTHO05D005253 6.3e-219 764.6 497 75.1
ATR0626G195 Amborella trichopoda HOM05D003985 ORTHO05D005253 1.8e-218 763.1 531 72.7
Lalb_Chr11g0064061 Lupinus albus HOM05D003985 ORTHO05D005253 3.1e-218 762.3 528 72.5
Migut.E01402 Erythranthe guttata HOM05D003985 ORTHO05D005253 7.0e-218 761.1 497 75.5
TWI63G1282 Tripterygium wilfordii HOM05D003985 ORTHO05D005253 2.7e-217 759.2 497 74.0
Lalb_Chr08g0243681 Lupinus albus HOM05D003985 ORTHO05D005253 3.5e-217 758.8 528 72.9
Glyma.06G075300 Glycine max HOM05D003985 ORTHO05D005253 5.9e-217 758.1 527 72.9
MD15G1112100 Malus domestica HOM05D003985 ORTHO05D005253 7.8e-217 757.7 527 71.7
Oeu002012.3 Olea europaea HOM05D003985 ORTHO05D005253 1.3e-216 756.9 527 71.5
BcaB03g12676 Brassica carinata HOM05D003985 ORTHO05D005253 5.6e-215 751.5 527 71.2
Lj8A420G13 Lonicera japonica HOM05D003985 ORTHO05D005253 7.3e-215 751.1 470 78.1
TPR.G12431 Trifolium pratense HOM05D003985 ORTHO05D005253 1.2e-214 750.4 530 72.5
Phvul.009G099900 Phaseolus vulgaris HOM05D003985 ORTHO05D005253 1.6e-214 750.0 527 72.5
BcaNung01543 Brassica carinata HOM05D003985 ORTHO05D005253 1.0e-213 747.3 527 71.2
Thhalv10024653m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 4.0e-213 745.3 527 71.2
BcaNung03411 Brassica carinata HOM05D003985 ORTHO05D005253 6.8e-213 744.6 527 70.6
A08p18880 Brassica napus HOM05D003985 ORTHO05D005253 6.8e-213 744.6 527 70.8
BraA08t33849Z Brassica rapa HOM05D003985 ORTHO05D005253 6.8e-213 744.6 527 70.8
BcaC01g01113 Brassica carinata HOM05D003985 ORTHO05D005253 8.9e-213 744.2 497 73.0
C03p88280 Brassica napus HOM05D003985 ORTHO05D005253 8.9e-213 744.2 497 73.0
BolC3t21136H Brassica oleracea HOM05D003985 ORTHO05D005253 8.9e-213 744.2 497 73.0
CARHR239030 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.6e-212 742.7 527 70.6
AUR62020691 Chenopodium quinoa HOM05D003985 ORTHO05D005253 2.6e-212 742.7 498 74.3
CsaV3_3G046890 Cucumis sativus L. HOM05D003985 ORTHO05D005253 4.4e-212 741.9 497 72.4
Hma1.2p1_0268F.1_g107610 Hydrangea macrophylla HOM05D003985 ORTHO05D005253 4.4e-212 741.9 421 85.3
C07p58460 Brassica napus HOM05D003985 ORTHO05D005253 7.5e-212 741.1 527 70.8
A03p60550 Brassica napus HOM05D003985 ORTHO05D005253 1.3e-211 740.3 527 70.8
Carub.0007s0941 Capsella rubella HOM05D003985 ORTHO05D005253 1.3e-211 740.3 527 70.8
Sed0018239 Sechium edule HOM05D003985 ORTHO05D005253 1.7e-211 740.0 528 70.5
BraA03t15094Z Brassica rapa HOM05D003985 ORTHO05D005253 2.2e-211 739.6 527 70.8
Sp7g29000 Schrenkiella parvula HOM05D003985 ORTHO05D005253 2.2e-211 739.6 527 70.4
BcaNung02721 Brassica carinata HOM05D003985 ORTHO05D005253 3.7e-211 738.8 527 70.6
Os02g0139200 Oryza sativa ssp. japonica HOM05D003985 ORTHO05D005253 8.3e-211 737.6 523 70.2
Medtr3g108640 Medicago truncatula HOM05D003985 ORTHO05D005253 2.7e-209 732.6 530 71.1
SEGI_26514 Sequoiadendron giganteum HOM05D003985 ORTHO05D005253 2.7e-209 732.6 501 71.5
AL7G20950 Arabidopsis lyrata HOM05D003985 ORTHO05D005253 1.3e-208 730.3 527 70.2
Psat0s2583g0040 Pisum sativum HOM05D003985 ORTHO05D005253 3.9e-208 728.8 531 69.9
Lj8C416G1 Lonicera japonica HOM05D003985 ORTHO05D005253 5.0e-208 728.4 517 71.8
AUR62028034 Chenopodium quinoa HOM05D003985 ORTHO05D005253 6.6e-208 728.0 547 68.9
AT4G31120 Arabidopsis thaliana HOM05D003985 ORTHO05D005253 1.9e-207 726.5 529 69.8
Ca_15682_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.3e-207 725.7 523 70.7
SalBow8G1365 Salvia bowleyana HOM05D003985 ORTHO05D005253 4.3e-207 725.3 522 69.9
PGR044G2633 Punica granatum HOM05D003985 ORTHO05D005253 7.3e-207 724.5 548 68.1
FvH4_2g30610 Fragaria vesca HOM05D003985 ORTHO05D005253 6.2e-206 721.5 469 75.1
FAN27G1558 Fragaria x ananassa HOM05D003985 ORTHO05D005253 6.2e-206 721.5 521 69.7
Zm00001eb232020 Zea mays HOM05D003985 ORTHO05D005253 1.4e-205 720.3 520 69.0
HPP92_026442 Vanilla planifolia HOM05D003985 ORTHO05D005253 1.5e-204 716.8 522 68.8
MBI13_g33580_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 3.4e-204 715.7 460 77.0
MELO3C030447.2 Cucumis melo HOM05D003985 ORTHO05D005253 4.4e-204 715.3 511 69.7
Zm00001eb209210 Zea mays HOM05D003985 ORTHO05D005253 5.8e-204 714.9 532 67.3
FAN20G2665 Fragaria x ananassa HOM05D003985 ORTHO05D005253 7.0e-202 708.0 497 71.2
AagrBONN_evm.TU.Sc2ySwM_228.4220 Anthoceros agrestis HOM05D003985 ORTHO05D005253 1.9e-199 699.9 531 66.3
Mapoly0116s0029 Marchantia polymorpha HOM05D003985 ORTHO05D005253 2.3e-197 693.0 560 63.4
Aa31LG2G19220 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.4e-194 682.9 557 64.1
ClCG05G017380 Citrullus lanatus HOM05D003985 ORTHO05D005253 3.2e-194 682.6 527 66.8
EL10Ac2g03661 Beta vulgaris HOM05D003985 ORTHO05D005253 3.9e-192 675.6 516 66.7
Pp3c1_39750 Physcomitrium patens HOM05D003985 ORTHO05D005253 8.6e-192 674.5 503 66.8
Pp3c17_13030 Physcomitrium patens HOM05D003985 ORTHO05D005253 4.0e-189 665.6 508 65.2
BolC7t46300H Brassica oleracea HOM05D003985 ORTHO05D005253 5.2e-189 665.2 549 64.3
CBR_g50848 Chara braunii HOM05D003985 ORTHO05D005253 6.8e-189 664.8 501 64.9
Potri.006G281000 Populus trichocarpa HOM05D003985 ORTHO05D005253 2.9e-187 659.4 512 67.0
CDE06G1054 Ceratophyllum demersum HOM05D003985 ORTHO05D005253 8.4e-187 657.9 454 70.5
SMO334G0088 Selaginella moellendorffii HOM05D003985 ORTHO05D005253 3.2e-186 656.0 530 63.0
unitig_0.g2194 Utricularia gibba HOM05D003985 ORTHO05D005253 2.7e-185 652.9 497 68.0
Sed0018865 Sechium edule HOM05D003985 ORTHO05D005253 4.7e-182 642.1 527 62.2
Pp3c17_13031 Physcomitrium patens HOM05D003985 ORTHO05D005253 3.2e-178 629.4 487 64.7
Sp4g03340 Schrenkiella parvula HOM05D003985 ORTHO05D005253 1.1e-165 587.8 527 58.4
Carub.0004s0367 Capsella rubella HOM05D003985 ORTHO05D005253 9.9e-164 581.3 501 58.9
MD15G1112600 Malus domestica HOM05D003985 ORTHO05D005253 1.3e-150 537.7 342 76.9
Thhalv10000136m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 4.6e-145 519.2 477 56.4
Aa31sc593G10 Aethionema arabicum HOM05D003985 ORTHO05D005253 2.8e-142 510.0 406 63.5
VMungo1309G1102 Vigna mungo HOM05D003985 ORTHO05D005253 4.7e-137 492.7 278 86.7
Cre03.g176550 Chlamydomonas reinhardtii HOM05D003985 ORTHO05D005253 1.3e-131 474.6 544 48.0
TPR.G30956 Trifolium pratense HOM05D003985 ORTHO05D005253 3.8e-131 473.0 505 50.9
MCO04G116 Micromonas commoda HOM05D003985 ORTHO05D005253 2.2e-126 457.2 508 50.8
Ca_12891_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 7.7e-124 448.7 499 51.3
Thhalv10000691m.g Eutrema salsugineum HOM05D003985 ORTHO05D005253 5.5e-122 442.6 471 51.4
C01p07840 Brassica napus HOM05D003985 ORTHO05D005253 1.6e-121 441.0 278 78.4
PRCOL_00000397 Prasinoderma coloniale HOM05D003985 ORTHO05D005253 6.7e-120 435.6 505 48.1
Aa31LG7G12410 Aethionema arabicum HOM05D003985 ORTHO05D005253 9.7e-119 431.8 498 47.6
CARHR117750 Cardamine hirsuta HOM05D003985 ORTHO05D005253 3.7e-118 429.9 497 51.1
BolC1t00771H Brassica oleracea HOM05D003985 ORTHO05D005253 2.9e-115 420.2 263 77.6
SHI03164 Sapria himalayana HOM05D003985 ORTHO05D005253 6.3e-110 402.5 387 57.1
Nitab4.5_0020175g0010 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.1e-106 391.7 217 87.1
CARHR117740 Cardamine hirsuta HOM05D003985 ORTHO05D005253 2.8e-102 377.1 283 69.6
BcaC09g51896 Brassica carinata HOM05D003985 ORTHO05D005253 1.3e-99 368.2 265 72.1
Nitab4.5_0003763g0040 Nicotiana tabacum HOM05D003985 ORTHO05D005253 1.3e-94 351.7 268 66.8
Ca_12890_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.7e-78 297.0 243 61.3
Ca_12894_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 1.1e-64 252.3 201 62.7
Haze_26428 Corylus avellana HOM05D003985 ORTHO05D005253 9.9e-63 245.7 428 39.3
Haze_26909 Corylus avellana HOM05D003985 ORTHO05D005253 1.1e-61 242.3 513 34.7
Haze_26350 Corylus avellana HOM05D003985 ORTHO05D005253 5.1e-59 233.4 453 34.0
COL.COLO4_18638 Corchorus olitorius HOM05D003985 ORTHO05D005253 5.8e-55 219.9 238 55.5
VMungo1309G0405 Vigna mungo HOM05D003985 ORTHO05D005253 1.7e-54 218.4 200 58.0
TPR.G30955 Trifolium pratense HOM05D003985 ORTHO05D005253 4.2e-53 213.8 320 40.9
HanXRQChr08g0231401 Helianthus annuus HOM05D003985 ORTHO05D005253 1.9e-45 188.3 139 73.4
Cpa.g.sc52.83 Carica papaya HOM05D003985 ORTHO05D005253 2.3e-43 181.4 94 89.4
MBI13_g46508_MAGBIO Magnolia biondii HOM05D003985 ORTHO05D005253 9.6e-42 176.0 172 54.1
Ca_02459_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.4e-39 167.5 145 64.8
MD15G1112700 Malus domestica HOM05D003985 ORTHO05D005253 7.1e-37 159.8 138 59.4
TPR.G30953 Trifolium pratense HOM05D003985 ORTHO05D005253 2.4e-32 144.8 108 66.7
Ca_12896_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.1e-32 144.4 161 49.7
MD15G1111800 Malus domestica HOM05D003985 ORTHO05D005253 3.1e-32 144.4 285 37.9
TPR.G20415 Trifolium pratense HOM05D003985 ORTHO05D038560 1.5e-23 115.5 65 83.1
SHI03163 Sapria himalayana HOM05D003985 ORTHO05D005253 3.8e-22 110.9 107 55.1
TPR.G36216 Trifolium pratense HOM05D003985 ORTHO05D005253 3.6e-20 104.4 138 42.0
TPR.G39898 Trifolium pratense HOM05D003985 ORTHO05D044347 1.8e-19 102.1 68 66.2
Zm00001eb086470 Zea mays HOM05D000879 ORTHO05D002043 2.3e-19 101.7 158 39.2
Ca_27914_v3 Cicer arietinum L. HOM05D003985 ORTHO05D044347 4.1e-16 90.9 65 69.2
Ca_12155_v3 Cicer arietinum L. HOM05D003985 ORTHO05D005253 3.5e-15 87.8 50 84.0
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 8.5e-14 83.2 52 75.0
AL4G14710 Arabidopsis lyrata HOM05D003985 ORTHO05D038560 2.7e-12 78.2 79 51.9
TPR.G33018 Trifolium pratense HOM05D000456 ORTHO05D000887 2.7e-12 78.2 56 71.4
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 3.9e-11 74.3 41 80.5
BcaB02g10473 Brassica carinata HOM05D012099 ORTHO05D014504 4.8e-09 67.4 43 72.1
MCO05G072 Micromonas commoda HOM05D000639 ORTHO05D003485 7.0e-08 63.5 272 25.0
Pp3c15_2560 Physcomitrium patens HOM05D000639 ORTHO05D005966 4.5e-07 60.8 249 26.5
MCO03G234 Micromonas commoda HOM05D000639 ORTHO05D006731 2.9e-06 58.2 264 24.2


User provided reference genes

Program Settings