Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0047900 Rhododendron simsii HOM05D003719 ORTHO05D004116 2.7e-248 861.7 478 100.0
vmacro13601 Vaccinium macrocarpon HOM05D003719 ORTHO05D004116 2.1e-147 526.6 443 71.1
Actinidia05832 Actinidia chinensis HOM05D003719 ORTHO05D004116 5.8e-134 481.9 485 60.4
Actinidia31730 Actinidia chinensis HOM05D003719 ORTHO05D004116 2.2e-133 479.9 494 59.9
Dinv43958 Davidia involucrata HOM05D003719 ORTHO05D004116 2.8e-112 409.8 395 58.0
Dinv43515 Davidia involucrata HOM05D003719 ORTHO05D004116 2.2e-109 400.2 387 57.9
Hma1.2p1_0128F.1_g060060 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 1.6e-96 357.5 471 49.0
GSVIVG01019328001 Vitis vinifera HOM05D003719 ORTHO05D004116 1.0e-85 321.6 396 49.0
Nitab4.5_0000792g0110 Nicotiana tabacum HOM05D003719 ORTHO05D004116 9.4e-84 315.1 399 46.9
Thecc.05G235300 Theobroma cacao HOM05D003719 ORTHO05D004116 3.0e-82 310.1 395 46.3
Nitab4.5_0000050g0180 Nicotiana tabacum HOM05D003719 ORTHO05D004116 1.8e-79 300.8 450 42.2
Gorai.007G347200 Gossypium raimondii HOM05D003719 ORTHO05D004116 2.4e-79 300.4 401 45.9
Gohir.D11G317400 Gossypium hirsutum HOM05D003719 ORTHO05D004116 5.3e-79 299.3 401 45.6
Gohir.A11G301800 Gossypium hirsutum HOM05D003719 ORTHO05D004116 7.0e-79 298.9 415 45.1
RcHm_v2.0_Chr1g0340791 Rosa chinensis HOM05D003719 ORTHO05D004116 2.9e-77 293.5 391 46.5
Cc02_g26500 Coffea canephora HOM05D003719 ORTHO05D004116 3.8e-77 293.1 390 46.4
QL04p053441 Quercus lobata HOM05D003719 ORTHO05D004116 4.2e-76 289.7 393 45.8
Duzib128G0107 Durio zibethinus HOM05D003719 ORTHO05D004116 9.4e-76 288.5 399 45.4
CiPaw.02G047600 Carya illinoinensis HOM05D003719 ORTHO05D004116 3.6e-75 286.6 390 44.6
Manes.09G133700 Manihot esculenta HOM05D003719 ORTHO05D004116 6.1e-75 285.8 466 43.3
TWI60G0027 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 8.0e-75 285.4 396 45.5
FAN06G0622 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.8e-74 284.3 416 44.5
FAN10G3972 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.8e-74 284.3 407 45.2
MSTRG.4990 Avicennia marina HOM05D003719 ORTHO05D004116 4.0e-74 283.1 407 43.7
TWI32G1338 Tripterygium wilfordii HOM05D003719 ORTHO05D004116 5.7e-73 279.3 391 45.5
Eucgr.E01743 Eucalyptus grandis HOM05D003719 ORTHO05D004116 7.5e-73 278.9 403 46.2
HanXRQChr04g0117621 Helianthus annuus HOM05D003719 ORTHO05D004116 7.5e-73 278.9 405 44.4
Potri.013G070400 Populus trichocarpa HOM05D003719 ORTHO05D004116 4.8e-72 276.2 477 43.0
MD02G1231000 Malus domestica HOM05D003719 ORTHO05D004116 8.2e-72 275.4 410 43.7
TAR629G0070 Trochodendron aralioides HOM05D003719 ORTHO05D004116 8.2e-72 275.4 401 43.1
Migut.N01648 Erythranthe guttata HOM05D003719 ORTHO05D004116 2.4e-71 273.9 495 40.6
Nitab4.5_0003123g0030 Nicotiana tabacum HOM05D003719 ORTHO05D004116 4.1e-71 273.1 473 38.9
Peaxi162Scf00245g00417 Petunia axillaris HOM05D003719 ORTHO05D004116 5.3e-71 272.7 442 40.0
Duzib177G0203 Durio zibethinus HOM05D003719 ORTHO05D004116 7.7e-70 268.9 375 44.3
Oeu020240.1 Olea europaea HOM05D003719 ORTHO05D004116 1.0e-69 268.5 400 42.2
Manes.08G156200 Manihot esculenta HOM05D003719 ORTHO05D004116 1.7e-69 267.7 399 43.1
MD07G1081800 Malus domestica HOM05D003719 ORTHO05D004116 2.9e-69 266.9 411 41.8
MBI04_g06283_MAGBIO Magnolia biondii HOM05D003719 ORTHO05D004116 5.5e-68 262.7 394 42.6
Potri.019G044400 Populus trichocarpa HOM05D003719 ORTHO05D004116 4.7e-67 259.6 481 41.2
CANSAT25G2268 Cannabis sativa HOM05D003719 ORTHO05D004116 1.0e-66 258.5 399 43.1
Haze_15777 Corylus avellana HOM05D003719 ORTHO05D004116 6.8e-66 255.8 366 43.4
PGSC0003DMG400031112 Solanum tuberosum HOM05D003719 ORTHO05D004116 8.8e-66 255.4 399 41.6
ClCG06G000580 Citrullus lanatus HOM05D003719 ORTHO05D004116 1.2e-65 255.0 461 39.7
Ciclev10031549m.g Citrus clementina HOM05D003719 ORTHO05D004116 1.5e-65 254.6 400 41.8
Nn1g09363 Nelumbo nucifera HOM05D003719 ORTHO05D004116 1.5e-65 254.6 390 39.5
MELO3C022484.2 Cucumis melo HOM05D003719 ORTHO05D004116 9.8e-65 251.9 400 41.5
Nitab4.5_0025236g0010 Nicotiana tabacum HOM05D003719 ORTHO05D004116 9.8e-65 251.9 452 41.2
CsaV3_6G006350 Cucumis sativus L. HOM05D003719 ORTHO05D004116 1.3e-64 251.5 477 39.0
Sabra19G0054700 Salix brachista HOM05D003719 ORTHO05D004116 5.4e-63 246.1 382 42.1
Sed0010466 Sechium edule HOM05D003719 ORTHO05D004116 1.6e-62 244.6 389 40.6
Prupe.2G107000 Prunus persica HOM05D003719 ORTHO05D004116 2.0e-62 244.2 371 42.3
Sopen01g033060 Solanum pennellii HOM05D003719 ORTHO05D004116 3.5e-62 243.4 412 40.5
Solyc01g081500.4 Solanum lycopersicum HOM05D003719 ORTHO05D004116 2.2e-61 240.7 412 40.3
FvH4_7g08280 Fragaria vesca HOM05D003719 ORTHO05D004116 5.0e-61 239.6 365 43.0
PGR042G1172 Punica granatum HOM05D003719 ORTHO05D004116 8.5e-61 238.8 395 42.8
FAN03G1006 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.1e-60 238.4 390 42.1
Hma1.2p1_0462F.1_g158020 Hydrangea macrophylla HOM05D003719 ORTHO05D004116 1.1e-60 238.4 326 46.0
THA.LOC104820814 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 2.8e-59 233.8 402 38.6
ECA236G3956 Erigeron canadensis HOM05D001257 ORTHO05D005285 6.1e-59 232.6 402 38.3
Atru.chr2.1627 Acer truncatum HOM05D003719 ORTHO05D004116 1.8e-58 231.1 399 40.4
Oeu024948.1 Olea europaea HOM05D003719 ORTHO05D004116 3.0e-58 230.3 404 40.6
Cpa.g.sc73.30 Carica papaya HOM05D003719 ORTHO05D004116 1.5e-57 228.0 355 43.4
Sc02g0003460 Simmondsia chinensis HOM05D003719 ORTHO05D004116 2.6e-57 227.3 393 40.5
arahy.Tifrunner.gnm1.ann1.N569AS Arachis hypogaea HOM05D003719 ORTHO05D004116 2.2e-56 224.2 393 40.2
Peaxi162Scf00907g00023 Petunia axillaris HOM05D003719 ORTHO05D004116 3.1e-55 220.3 400 38.2
Carub.0006s1593 Capsella rubella HOM05D003719 ORTHO05D004116 9.2e-55 218.8 409 40.3
THA.LOC104827246 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 1.2e-54 218.4 460 37.0
AL6G28780 Arabidopsis lyrata HOM05D003719 ORTHO05D004116 1.6e-54 218.0 411 40.6
Sp6g26530 Schrenkiella parvula HOM05D003719 ORTHO05D004116 1.6e-54 218.0 413 39.0
Sabra13G0061200 Salix brachista HOM05D003719 ORTHO05D004116 2.0e-54 217.6 394 38.8
arahy.Tifrunner.gnm1.ann1.U92JU2 Arachis hypogaea HOM05D003719 ORTHO05D004116 7.7e-54 215.7 390 40.3
Sed0012975 Sechium edule HOM05D003719 ORTHO05D004116 2.3e-53 214.2 398 38.4
AT5G17690 Arabidopsis thaliana HOM05D003719 ORTHO05D004116 5.0e-53 213.0 414 39.9
EL10Ac1g00661 Beta vulgaris HOM05D003719 ORTHO05D004116 6.6e-53 212.6 404 37.9
Ah.05g177100 Amaranthus hybridus HOM05D003719 ORTHO05D004116 8.6e-53 212.2 389 39.1
THA.LOC104802889 Tarenaya hassleriana HOM05D003719 ORTHO05D004116 8.6e-53 212.2 476 37.6
COL.COLO4_32214 Corchorus olitorius HOM05D003719 ORTHO05D004116 1.5e-52 211.5 323 41.8
CARHR195490 Cardamine hirsuta HOM05D003719 ORTHO05D004116 3.3e-52 210.3 408 39.7
Lj9A617T60 Lonicera japonica HOM05D003719 ORTHO05D004116 9.5e-52 208.8 443 39.7
SGA_v2.0_scaffold4G02229 Striga asiatica HOM05D003719 ORTHO05D004116 9.5e-52 208.8 420 37.9
Aqoxy7G02508 Aquilegia oxysepala HOM05D003719 ORTHO05D004116 2.8e-51 207.2 393 38.2
Glyma.16G079900 Glycine max HOM05D003719 ORTHO05D004116 3.6e-51 206.8 392 38.3
Oeu045633.2 Olea europaea HOM05D003719 ORTHO05D004116 3.6e-51 206.8 381 40.4
Thhalv10013571m.g Eutrema salsugineum HOM05D003719 ORTHO05D004116 5.2e-50 203.0 405 37.8
PGSC0003DMG400031514 Solanum tuberosum HOM05D003719 ORTHO05D004116 8.9e-50 202.2 486 34.8
CDE11G0837 Ceratophyllum demersum HOM05D003719 ORTHO05D004116 1.5e-49 201.4 408 38.0
Aa31LG11G11940 Aethionema arabicum HOM05D003719 ORTHO05D004116 1.1e-47 195.3 398 37.9
SGA_v2.0_scaffold95G28748 Striga asiatica HOM05D003719 ORTHO05D004116 2.4e-47 194.1 449 35.9
Solyc10g024470.3 Solanum lycopersicum HOM05D003719 ORTHO05D004116 9.2e-47 192.2 483 34.0
unitig_0.g1580 Utricularia gibba HOM05D003719 ORTHO05D004116 9.2e-47 192.2 413 34.6
Lsat_1_v5_gn_1_89600 Lactuca sativa HOM05D003719 ORTHO05D004116 2.0e-46 191.0 397 34.5
BcaB08g36751 Brassica carinata HOM05D003719 ORTHO05D004116 1.3e-45 188.3 421 36.8
Lj3g0017682 Lotus japonicus HOM05D003719 ORTHO05D004116 3.0e-45 187.2 392 36.2
ECA248G2234 Erigeron canadensis HOM05D003719 ORTHO05D004116 6.6e-45 186.0 410 32.9
Sed0017190 Sechium edule HOM05D003719 ORTHO05D004116 6.6e-45 186.0 402 35.8
Hund17170 Selenicereus undatus HOM05D003719 ORTHO05D000105 8.6e-45 185.7 379 37.7
BcaC04g18768 Brassica carinata HOM05D003719 ORTHO05D004116 3.3e-44 183.7 410 36.1
C09p59480 Brassica napus HOM05D003719 ORTHO05D004116 3.3e-44 183.7 410 36.1
BolC9t58786H Brassica oleracea HOM05D003719 ORTHO05D004116 3.3e-44 183.7 410 36.1
A10p21730 Brassica napus HOM05D003719 ORTHO05D004116 4.3e-44 183.3 422 35.5
BraA10t44234Z Brassica rapa HOM05D003719 ORTHO05D004116 4.3e-44 183.3 422 35.5
PSO017G6528 Papaver somniferum HOM05D003719 ORTHO05D004116 4.3e-44 183.3 392 34.7
PSO170G0628 Papaver somniferum HOM05D003719 ORTHO05D004116 7.3e-44 182.6 391 37.9
Phvul.009G117500 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 1.6e-43 181.4 401 34.7
C02p09250 Brassica napus HOM05D003719 ORTHO05D004116 2.8e-43 180.6 397 37.3
BolC2t06833H Brassica oleracea HOM05D003719 ORTHO05D004116 6.2e-43 179.5 397 36.3
AUR62038028 Chenopodium quinoa HOM05D003719 ORTHO05D004116 8.0e-43 179.1 388 34.3
BcaC03g13534 Brassica carinata HOM05D003719 ORTHO05D004116 1.0e-42 178.7 398 36.4
Phvul.010G034600 Phaseolus vulgaris HOM05D003719 ORTHO05D004116 1.4e-42 178.3 490 34.3
CsaV3_3G009890 Cucumis sativus L. HOM05D002544 ORTHO05D007277 3.1e-42 177.2 410 33.4
Oeu034882.1 Olea europaea HOM05D003719 ORTHO05D004116 3.1e-42 177.2 391 38.4
ClCG05G002450 Citrullus lanatus HOM05D003719 ORTHO05D004116 5.2e-42 176.4 416 34.4
HanXRQChr11g0343451 Helianthus annuus HOM05D003719 ORTHO05D004116 2.0e-41 174.5 398 34.2
A02p04380 Brassica napus HOM05D003719 ORTHO05D004116 4.4e-41 173.3 395 36.7
BraA02t05402Z Brassica rapa HOM05D003719 ORTHO05D004116 5.8e-41 172.9 399 36.1
Lsat_1_v5_gn_7_34101 Lactuca sativa HOM05D003719 ORTHO05D004116 1.7e-40 171.4 405 36.0
VMungo1309G0350 Vigna mungo HOM05D003719 ORTHO05D004116 2.9e-40 170.6 394 33.8
TPR.G38555 Trifolium pratense HOM05D001257 ORTHO05D005285 6.4e-40 169.5 407 33.4
Sopen10g009690 Solanum pennellii HOM05D003719 ORTHO05D004116 8.3e-40 169.1 533 30.8
Glyma.03G094200 Glycine max HOM05D003719 ORTHO05D004116 1.1e-39 168.7 407 32.7
Oeu032776.1 Olea europaea HOM05D003719 ORTHO05D004116 2.4e-39 167.5 368 37.0
Os10g0324900 Oryza sativa ssp. japonica HOM05D003719 ORTHO05D004116 6.6e-37 159.5 400 33.8
DCAR_029570 Daucus carota HOM05D003719 ORTHO05D004116 8.6e-37 159.1 399 32.1
BraA09t37591Z Brassica rapa HOM05D003719 ORTHO05D004116 1.9e-36 157.9 394 35.3
Lalb_Chr13g0290971 Lupinus albus HOM05D003719 ORTHO05D004116 7.3e-36 156.0 375 31.5
VMungo0331G0617 Vigna mungo HOM05D003719 ORTHO05D004116 1.6e-35 154.8 459 32.9
Ca_23168_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 2.1e-35 154.5 400 33.0
DCAR_025000 Daucus carota HOM05D003719 ORTHO05D004116 1.1e-34 152.1 489 30.3
Lalb_Chr07g0194591 Lupinus albus HOM05D003719 ORTHO05D004116 3.1e-34 150.6 378 33.1
Glyma.06G001700 Glycine max HOM05D003719 ORTHO05D004116 4.0e-34 150.2 412 31.6
ATR0568G049 Amborella trichopoda HOM05D003719 ORTHO05D004116 4.4e-33 146.7 403 30.8
HPP92_020485 Vanilla planifolia HOM05D003719 ORTHO05D004116 5.8e-33 146.4 377 32.4
Glyma.04G002100 Glycine max HOM05D003719 ORTHO05D004116 2.2e-32 144.4 410 30.7
Psat5g001120 Pisum sativum HOM05D003719 ORTHO05D004116 1.9e-31 141.4 396 31.3
Migut.O00700 Erythranthe guttata HOM05D003719 ORTHO05D004116 1.6e-30 138.3 173 45.1
TPR.G9787 Trifolium pratense HOM05D003719 ORTHO05D004116 2.7e-30 137.5 470 28.9
Hund26916 Selenicereus undatus HOM05D003719 ORTHO05D004116 1.0e-29 135.6 382 31.9
SHI54853 Sapria himalayana HOM05D003719 ORTHO05D004116 8.6e-29 132.5 352 31.2
Lalb_Chr12g0210141 Lupinus albus HOM05D003719 ORTHO05D004116 1.1e-28 132.1 376 29.8
Lalb_Chr23g0264911 Lupinus albus HOM05D003719 ORTHO05D004116 1.2e-27 128.6 385 30.1
DCAR_015727 Daucus carota HOM05D003719 ORTHO05D004116 1.6e-27 128.3 276 37.0
FAN01G0294 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.6e-27 128.3 281 37.0
Migut.O00699 Erythranthe guttata HOM05D003719 ORTHO05D004116 8.9e-26 122.5 225 44.9
AUR62014507 Chenopodium quinoa HOM05D003719 ORTHO05D004116 3.8e-24 117.1 325 29.5
PSO732G0471 Papaver somniferum HOM05D003719 ORTHO05D004116 6.4e-24 116.3 390 29.7
BcaB01g05152 Brassica carinata HOM05D003719 ORTHO05D004116 1.0e-21 109.0 388 27.1
BolC3t13474H Brassica oleracea HOM05D003719 ORTHO05D004116 1.0e-21 109.0 388 27.1
SEGI_39270 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 1.0e-21 109.0 415 28.0
Ah.05g177090 Amaranthus hybridus HOM05D000308 ORTHO05D005285 8.6e-21 105.9 324 30.2
A03p08460 Brassica napus HOM05D003719 ORTHO05D004116 1.1e-20 105.5 402 26.6
BraA03t10169Z Brassica rapa HOM05D003719 ORTHO05D004116 1.1e-20 105.5 402 26.6
Nn7g37398 Nelumbo nucifera HOM05D003719 ORTHO05D004116 6.2e-19 99.8 66 72.7
FAN01G0740 Fragaria x ananassa HOM05D003719 ORTHO05D004116 1.4e-18 98.6 110 47.3
arahy.Tifrunner.gnm1.ann1.E07VAV Arachis hypogaea HOM05D003719 ORTHO05D004116 4.0e-18 97.1 377 26.5
Ca_15283_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 1.2e-17 95.5 325 29.2
Ca_15419_v3 Cicer arietinum L. HOM05D003719 ORTHO05D004116 1.2e-17 95.5 325 29.2
C03p09860 Brassica napus HOM05D003719 ORTHO05D004116 2.6e-17 94.4 391 25.6
BcaB01g04909 Brassica carinata HOM05D003719 ORTHO05D004116 4.4e-17 93.6 468 25.0
SHI50054 Sapria himalayana HOM05D003719 ORTHO05D004116 7.6e-17 92.8 320 29.7
BraA09t38097Z Brassica rapa HOM05D003719 ORTHO05D004116 2.2e-16 91.3 151 43.7
Pp3c9_6410 Physcomitrium patens HOM05D003719 ORTHO05D004116 4.9e-16 90.1 475 23.2
HanXRQChr04g0117671 Helianthus annuus HOM05D003719 ORTHO05D004116 1.2e-14 85.5 66 57.6
Mapoly0009s0028 Marchantia polymorpha HOM05D003719 ORTHO05D004116 1.0e-13 82.4 167 38.3
SHI15580 Sapria himalayana HOM05D003719 ORTHO05D004116 2.3e-13 81.3 320 29.4
Glyma.03G111600 Glycine max HOM05D003719 ORTHO05D004116 3.0e-13 80.9 105 48.6
PSO170G3936 Papaver somniferum HOM05D033783 ORTHO05D004116 8.7e-13 79.3 89 49.4
PSO017G2979 Papaver somniferum HOM05D033783 ORTHO05D004116 1.9e-12 78.2 89 48.3
CAN.G1612.6 Capsicum annuum HOM05D003719 ORTHO05D004116 3.3e-12 77.4 62 56.5
CAN.G1260.1 Capsicum annuum HOM05D003719 ORTHO05D004116 5.6e-12 76.6 73 52.1
AagrBONN_evm.TU.Sc2ySwM_228.2121 Anthoceros agrestis HOM05D035521 ORTHO05D031165 9.6e-12 75.9 151 38.4
PSO732G0498 Papaver somniferum HOM05D003719 ORTHO05D004116 6.2e-11 73.2 363 26.7
SEGI_28532 Sequoiadendron giganteum HOM05D003719 ORTHO05D004116 8.1e-11 72.8 55 54.5
Lalb_Chr10g0091841 Lupinus albus HOM05D003719 ORTHO05D004116 1.8e-10 71.6 67 44.8
PSO017G0756 Papaver somniferum HOM05D003719 ORTHO05D004116 4.0e-10 70.5 92 43.5
PSO732G0548 Papaver somniferum HOM05D003719 ORTHO05D004116 5.3e-10 70.1 358 26.0
PSO017G2223 Papaver somniferum HOM05D003719 ORTHO05D004116 2.6e-09 67.8 86 44.2
PSO675G5773 Papaver somniferum HOM05D003719 ORTHO05D004116 2.9e-08 64.3 85 41.2
CAN.G1612.7 Capsicum annuum HOM05D000541 ORTHO05D000137 3.8e-08 63.9 62 48.4
Mapoly0010s0167 Marchantia polymorpha HOM05D003719 ORTHO05D004116 4.9e-08 63.5 157 32.5
PSO349G0045 Papaver somniferum HOM05D003719 ORTHO05D004116 6.4e-08 63.2 89 39.3
Mapoly0024s0010 Marchantia polymorpha HOM05D003719 ORTHO05D004116 8.4e-08 62.8 94 39.4
Lalb_Chr13g0290921 Lupinus albus HOM05D003719 ORTHO05D004116 1.1e-07 62.4 62 50.0
PSO732G0588 Papaver somniferum HOM05D003719 ORTHO05D004116 4.2e-07 60.5 56 48.2
TPR.G9173 Trifolium pratense HOM05D000004 ORTHO05D000002 5.4e-07 60.1 59 44.1
RcHm_v2.0_Chr4g0424951 Rosa chinensis HOM05D003719 ORTHO05D004116 7.1e-07 59.7 30 76.7
SHI15577 Sapria himalayana HOM05D003719 ORTHO05D004116 6.0e-06 56.6 31 77.4


User provided reference genes

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