Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0045000 Rhododendron simsii HOM05D003128 ORTHO05D004333 1.3e-134 483.0 233 100.0
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 2.9e-78 295.8 239 65.3
Actinidia12215 Actinidia chinensis HOM05D003128 ORTHO05D004333 5.8e-63 245.0 207 63.3
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 2.1e-60 236.5 207 61.4
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 5.1e-59 231.9 206 60.2
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 5.1e-59 231.9 207 58.9
CSS0009858 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.1e-58 230.7 207 61.4
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.1e-58 230.7 207 61.4
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 1.1e-58 230.7 207 58.9
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 1.1e-56 224.2 207 58.0
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 1.5e-55 220.3 206 57.3
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 1.5e-55 220.3 159 73.0
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 5.8e-55 218.4 207 56.5
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 6.4e-54 214.9 207 56.5
Glyma.05G185000 Glycine max HOM05D003128 ORTHO05D004333 4.2e-53 212.2 203 55.2
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 9.3e-53 211.1 207 56.5
Glyma.08G143000 Glycine max HOM05D003128 ORTHO05D004333 2.1e-52 209.9 203 54.2
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 2.7e-52 209.5 206 55.3
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 3.5e-52 209.1 206 55.3
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 3.5e-52 209.1 207 54.1
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 1.0e-51 207.6 207 53.6
Medtr8g092060 Medicago truncatula HOM05D003128 ORTHO05D004333 3.9e-51 205.7 203 53.2
Phvul.002G265804 Phaseolus vulgaris HOM05D003128 ORTHO05D004333 3.9e-51 205.7 203 52.2
VMungo0251G0175 Vigna mungo HOM05D003128 ORTHO05D004333 5.1e-51 205.3 203 51.7
PSO541G0298 Papaver somniferum HOM05D003128 ORTHO05D004333 8.7e-51 204.5 201 53.2
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 8.7e-51 204.5 202 54.0
TPR.G2212 Trifolium pratense HOM05D003128 ORTHO05D004333 8.7e-51 204.5 207 51.7
Ca_17686_v3 Cicer arietinum L. HOM05D003128 ORTHO05D004333 2.5e-50 203.0 208 51.4
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 2.5e-50 203.0 207 52.2
Psat7g050400 Pisum sativum HOM05D003128 ORTHO05D004333 5.6e-50 201.8 207 51.2
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 1.6e-49 200.3 202 53.0
AUR62003293 Chenopodium quinoa HOM05D003128 ORTHO05D004333 2.1e-49 199.9 208 52.4
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 2.1e-49 199.9 208 52.4
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 2.1e-49 199.9 202 54.0
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 2.8e-49 199.5 209 52.6
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 4.8e-49 198.7 202 52.5
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 6.2e-49 198.4 201 52.2
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 1.4e-48 197.2 207 51.2
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 2.4e-48 196.4 202 52.5
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 3.1e-48 196.1 207 49.8
TWI75G1035 Tripterygium wilfordii HOM05D003128 ORTHO05D004333 5.3e-48 195.3 203 51.7
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 1.5e-47 193.7 207 49.3
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 2.6e-47 193.0 204 51.0
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 4.5e-47 192.2 159 61.0
CANSAT01G0023 Cannabis sativa HOM05D003128 ORTHO05D004333 7.6e-47 191.4 202 49.0
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 1.0e-46 191.0 207 49.8
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 2.9e-46 189.5 207 52.2
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 2.9e-46 189.5 204 52.0
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 2.9e-46 189.5 204 52.0
PSO017G2724 Papaver somniferum HOM05D003128 ORTHO05D004333 3.8e-46 189.1 207 50.7
BcaC07g38567 Brassica carinata HOM05D003128 ORTHO05D004333 4.9e-46 188.7 202 49.0
C08p13730 Brassica napus HOM05D003128 ORTHO05D004333 6.5e-46 188.3 202 49.0
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 6.5e-46 188.3 207 50.2
BolC8t49008H Brassica oleracea HOM05D003128 ORTHO05D004333 8.4e-46 188.0 202 49.0
BcaC07g38605 Brassica carinata HOM05D003128 ORTHO05D004333 1.1e-45 187.6 202 48.5
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 1.4e-45 187.2 207 49.3
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 1.4e-45 187.2 210 49.5
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 1.9e-45 186.8 204 51.5
Aa31LG1G4460 Aethionema arabicum HOM05D003128 ORTHO05D004333 2.5e-45 186.4 202 48.5
Sp1g09120 Schrenkiella parvula HOM05D003128 ORTHO05D004333 2.5e-45 186.4 202 48.5
Glyma.13G362700 Glycine max HOM05D003128 ORTHO05D004333 3.2e-45 186.0 209 49.8
Sp5g04780 Schrenkiella parvula HOM05D003128 ORTHO05D004333 3.2e-45 186.0 202 47.0
A08p33940 Brassica napus HOM05D003128 ORTHO05D004333 4.2e-45 185.7 202 48.0
BraA08t35308Z Brassica rapa HOM05D003128 ORTHO05D004333 4.2e-45 185.7 202 48.0
Carub.0005s2478 Capsella rubella HOM05D003128 ORTHO05D004333 4.2e-45 185.7 202 47.5
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 7.1e-45 184.9 204 51.0
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 7.1e-45 184.9 204 51.0
THA.LOC104819600 Tarenaya hassleriana HOM05D003128 ORTHO05D004333 7.1e-45 184.9 202 48.0
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 9.3e-45 184.5 207 49.8
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 1.2e-44 184.1 208 50.5
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 1.2e-44 184.1 209 47.4
AL5G39590 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 2.1e-44 183.3 202 47.0
Thhalv10006661m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 2.7e-44 183.0 202 48.0
Nitab4.5_0003588g0040 Nicotiana tabacum HOM05D003128 ORTHO05D004333 2.7e-44 183.0 203 46.8
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 3.5e-44 182.6 203 48.8
AT3G57940 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 6.0e-44 181.8 202 46.5
BcaC07g40165 Brassica carinata HOM05D003128 ORTHO05D004333 6.0e-44 181.8 202 46.5
Aa31LG2G10270 Aethionema arabicum HOM05D003128 ORTHO05D004333 7.9e-44 181.4 202 47.0
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 7.9e-44 181.4 206 48.5
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 1.8e-43 180.3 210 48.1
AL1G21290 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 3.0e-43 179.5 204 47.5
CARHR010630 Cardamine hirsuta HOM05D003128 ORTHO05D004333 3.9e-43 179.1 204 47.5
DCAR_001378 Daucus carota HOM05D003128 ORTHO05D004333 5.1e-43 178.7 205 48.8
A09p50770 Brassica napus HOM05D003128 ORTHO05D004333 6.7e-43 178.3 202 45.5
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 8.7e-43 177.9 207 48.8
C08p33490 Brassica napus HOM05D003128 ORTHO05D004333 1.1e-42 177.6 202 45.5
CARHR168240 Cardamine hirsuta HOM05D003128 ORTHO05D004333 1.1e-42 177.6 211 44.1
AT1G10490 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 1.5e-42 177.2 204 47.1
Carub.0001s0992 Capsella rubella HOM05D003128 ORTHO05D004333 1.5e-42 177.2 204 47.1
SGA_v2.0_scaffold47G17695 Striga asiatica HOM05D003128 ORTHO05D004333 1.9e-42 176.8 218 46.8
BraA09t40524Z Brassica rapa HOM05D003128 ORTHO05D004333 2.5e-42 176.4 202 45.5
Thhalv10005765m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 2.5e-42 176.4 202 46.5
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 3.3e-42 176.0 208 45.7
ATR1120G197 Amborella trichopoda HOM05D003128 ORTHO05D004333 3.3e-42 176.0 202 49.0
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 3.3e-42 176.0 208 47.6
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 5.7e-42 175.3 203 47.8
Oeu054942.1 Olea europaea HOM05D003128 ORTHO05D004333 3.7e-41 172.6 207 48.8
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 4.8e-41 172.2 208 46.2
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 2.4e-40 169.9 209 47.4
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 5.3e-40 168.7 206 44.7
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 6.9e-40 168.3 201 47.8
Medtr2g028030 Medicago truncatula HOM05D003128 ORTHO05D004333 1.2e-39 167.5 202 47.0
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 2.0e-39 166.8 203 45.8
Solyc04g051670.3 Solanum lycopersicum HOM05D003128 ORTHO05D004333 4.5e-39 165.6 202 45.5
Sopen04g023030 Solanum pennellii HOM05D003128 ORTHO05D004333 4.5e-39 165.6 202 45.5
CSS0015093 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 8.5e-38 161.4 222 42.3
Os12g0170700 Oryza sativa ssp. japonica HOM05D003128 ORTHO05D004333 8.5e-38 161.4 197 47.7
Sabra05G0070500 Salix brachista HOM05D003128 ORTHO05D004333 8.5e-38 161.4 232 40.9
CSS0032353 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 2.5e-37 159.8 206 45.1
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 3.2e-37 159.5 201 45.8
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 1.6e-36 157.1 202 43.1
ClCG01G015970 Citrullus lanatus HOM05D003128 ORTHO05D004333 3.6e-36 156.0 205 44.4
SalBow5G5535 Salvia bowleyana HOM05D003128 ORTHO05D004333 3.6e-36 156.0 200 45.5
SalBow5G3190 Salvia bowleyana HOM05D003128 ORTHO05D004333 4.6e-36 155.6 200 45.5
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 4.6e-36 155.6 206 41.7
ECA236G3006 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.0e-35 154.5 208 43.8
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 1.0e-35 154.5 206 41.7
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 1.3e-35 154.1 217 41.5
HPP92_027494 Vanilla planifolia HOM05D003128 ORTHO05D004333 5.1e-35 152.1 206 41.7
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 7.4e-34 148.3 206 40.8
SalBow1G7304 Salvia bowleyana HOM05D003128 ORTHO05D004333 6.3e-33 145.2 211 42.7
Pp3c5_20530 Physcomitrium patens HOM05D003128 ORTHO05D004333 8.2e-33 144.8 205 38.0
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 1.5e-31 140.6 201 43.3
unitig_37.g12839 Utricularia gibba HOM05D003128 ORTHO05D004333 7.7e-31 138.3 154 51.3
EL10Ac8g20517 Beta vulgaris HOM05D003128 ORTHO05D004333 1.3e-30 137.5 206 39.3
Rhsim08G0031600 Rhododendron simsii HOM05D003128 ORTHO05D004333 2.2e-30 136.7 201 40.3
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 2.9e-30 136.3 279 33.7
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 2.9e-30 136.3 201 40.8
EL10Ac8g20519 Beta vulgaris HOM05D003128 ORTHO05D004333 5.0e-30 135.6 207 39.6
ECA236G3821 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.0e-27 127.9 208 38.9
SHI11304 Sapria himalayana HOM05D003128 ORTHO05D004333 1.0e-27 127.9 231 36.8
CBR_g45300 Chara braunii HOM05D003128 ORTHO05D004333 3.0e-27 126.3 203 36.0
Cpa.g.sc566.1 Carica papaya HOM05D003128 ORTHO05D004333 1.1e-26 124.4 109 56.0
Mapoly0031s0153 Marchantia polymorpha HOM05D003128 ORTHO05D004333 2.6e-26 123.2 204 35.3
RhsimUnG0209100 Rhododendron simsii HOM05D003128 ORTHO05D037442 5.7e-26 122.1 63 95.2
Sc07g0006790 Simmondsia chinensis HOM05D003128 ORTHO05D004333 2.8e-25 119.8 157 44.6
Psat1g070640 Pisum sativum HOM05D003128 ORTHO05D004333 6.3e-25 118.6 102 57.8
Cre03.g192850 Chlamydomonas reinhardtii HOM05D003128 ORTHO05D004333 1.1e-24 117.9 193 35.8
Nitab4.5_0000184g0230 Nicotiana tabacum HOM05D003128 ORTHO05D004333 5.3e-24 115.5 117 52.1
PRCOL_00004456 Prasinoderma coloniale HOM05D003128 ORTHO05D004333 1.1e-21 107.8 237 30.8
ECA236G2760 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.4e-21 107.5 172 38.4
ClCG03G016370 Citrullus lanatus HOM05D003128 ORTHO05D004333 9.4e-21 104.8 222 32.0
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 9.4e-21 104.8 201 35.3
COL.COLO4_10987 Corchorus olitorius HOM05D003128 ORTHO05D004333 8.0e-20 101.7 135 41.5
CsaV3_1G039600 Cucumis sativus L. HOM05D003128 ORTHO05D004333 6.7e-19 98.6 201 32.3
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 8.8e-19 98.2 201 32.3
Sed0011569 Sechium edule HOM05D003128 ORTHO05D004333 6.3e-17 92.0 206 33.0
CsaV3_1G042320 Cucumis sativus L. HOM05D003128 ORTHO05D001951 7.0e-16 88.6 208 28.8
MCO04G276 Micromonas commoda HOM05D003128 ORTHO05D004333 7.0e-16 88.6 155 35.5
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 5.9e-15 85.5 203 30.0
PGSC0003DMG400031195 Solanum tuberosum HOM05D003128 ORTHO05D004333 5.5e-13 79.0 108 40.7
Rhsim06G0170900 Rhododendron simsii HOM05D003128 ORTHO05D037442 1.8e-11 73.9 36 97.2
CAN.G710.3 Capsicum annuum HOM05D003128 ORTHO05D004333 5.2e-11 72.4 108 36.1
ClCG03G013760 Citrullus lanatus HOM05D003128 ORTHO05D004333 2.8e-09 66.6 197 28.4
Oeu011362.1 Olea europaea HOM05D000060 ORTHO05D003150 8.2e-09 65.1 47 61.7
arahy.Tifrunner.gnm1.ann1.31C5CF Arachis hypogaea HOM05D003128 ORTHO05D004333 2.7e-07 60.1 48 60.4
BcaC07g41819 Brassica carinata HOM05D003128 ORTHO05D024111 2.7e-07 60.1 106 36.8
SEGI_30432 Sequoiadendron giganteum HOM05D003128 ORTHO05D004333 3.8e-06 56.2 49 55.1
C08p48560 Brassica napus HOM05D003128 ORTHO05D004333 8.5e-06 55.1 48 52.1
QL02p014302 Quercus lobata HOM05D000075 ORTHO05D000264 8.5e-06 55.1 43 67.4


User provided reference genes

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