Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim07G0012400 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.3e-296 1022.3 516 100.0
vmacro13252 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 3.2e-223 778.5 550 75.6
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 1.8e-173 613.2 555 61.4
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 3.6e-166 589.0 552 59.8
Rhsim01G0164800 Rhododendron simsii HOM05D004707 ORTHO05D005837 5.4e-162 575.1 572 56.8
vmacro20909 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 9.6e-151 537.7 553 55.9
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 5.5e-138 495.4 554 50.4
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 2.1e-137 493.4 481 57.8
RcHm_v2.0_Chr1g0357041 Rosa chinensis HOM05D004707 ORTHO05D005837 4.6e-137 492.3 551 51.7
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 2.3e-136 490.0 553 50.8
FvH4_7g15010 Fragaria vesca HOM05D004707 ORTHO05D005837 2.5e-135 486.5 551 51.2
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 9.7e-135 484.6 554 50.5
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 1.3e-134 484.2 553 50.3
FAN10G1283 Fragaria x ananassa HOM05D004707 ORTHO05D005837 4.8e-134 482.3 551 50.1
FAN06G2758 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.1e-133 481.1 550 50.9
FAN10G2784 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.4e-133 480.7 551 50.3
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 4.1e-133 479.2 557 50.8
FAN03G0218 Fragaria x ananassa HOM05D004707 ORTHO05D005837 4.5e-132 475.7 551 50.1
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 5.0e-131 472.2 552 49.8
Nn6g33309 Nelumbo nucifera HOM05D004707 ORTHO05D005837 5.0e-131 472.2 522 51.7
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 8.5e-131 471.5 548 49.1
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 4.2e-130 469.2 437 58.8
Cc00_g17840 Coffea canephora HOM05D004707 ORTHO05D005837 7.9e-129 464.9 555 48.6
PGR031G2856 Punica granatum HOM05D004707 ORTHO05D005837 1.7e-126 457.2 557 47.8
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 4.1e-125 452.6 551 47.0
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 4.1e-125 452.6 522 49.8
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 4.1e-125 452.6 550 49.6
SGA_v2.0_scaffold95G28817 Striga asiatica HOM05D004707 ORTHO05D005837 1.1e-122 444.5 549 46.8
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 1.9e-122 443.7 548 47.6
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 4.2e-122 442.6 557 46.5
Sopen10g005800 Solanum pennellii HOM05D004707 ORTHO05D005837 4.2e-122 442.6 523 47.8
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 2.1e-121 440.3 562 48.6
Solyc10g012060.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 4.7e-121 439.1 523 47.6
Manes.01G254000 Manihot esculenta HOM05D004707 ORTHO05D005837 1.8e-120 437.2 553 46.7
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 3.0e-120 436.4 557 47.4
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 8.8e-120 434.9 564 46.1
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 8.8e-120 434.9 543 48.1
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 1.1e-119 434.5 543 48.3
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 7.4e-119 431.8 561 46.2
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 7.4e-119 431.8 551 45.6
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 1.3e-118 431.0 554 46.2
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 1.7e-118 430.6 554 45.8
FAN01G2554 Fragaria x ananassa HOM05D004707 ORTHO05D005837 6.3e-118 428.7 455 53.8
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 1.1e-117 427.9 559 46.9
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.8e-117 427.2 553 46.8
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 1.8e-117 427.2 553 47.2
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 5.3e-117 425.6 555 45.9
COL.COLO4_12751 Corchorus olitorius HOM05D004707 ORTHO05D005837 7.0e-117 425.2 430 55.3
CAN.G91.14 Capsicum annuum HOM05D004707 ORTHO05D005837 9.1e-117 424.9 547 45.3
Sc06g0007250 Simmondsia chinensis HOM05D004707 ORTHO05D005837 1.5e-116 424.1 591 43.1
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 2.0e-116 423.7 550 44.7
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 2.2e-115 420.2 558 44.6
CANSAT56G0368 Cannabis sativa HOM05D004707 ORTHO05D005837 1.9e-114 417.2 454 52.2
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 9.4e-114 414.8 465 49.0
Peaxi162Scf00585g00318 Petunia axillaris HOM05D004707 ORTHO05D005837 2.7e-113 413.3 431 52.7
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 3.0e-112 409.8 459 50.5
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 3.0e-112 409.8 560 44.8
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 5.2e-112 409.1 550 43.6
MELO3C006094.2 Cucumis melo HOM05D004707 ORTHO05D005837 8.8e-112 408.3 526 45.4
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 2.0e-111 407.1 405 56.8
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 4.4e-111 406.0 550 43.8
Sed0023991 Sechium edule HOM05D004707 ORTHO05D005837 1.3e-110 404.4 553 45.6
Ah.05g180290 Amaranthus hybridus HOM05D004707 ORTHO05D005837 1.7e-110 404.1 567 44.1
CsaV3_3G008770 Cucumis sativus L. HOM05D004707 ORTHO05D005837 2.2e-110 403.7 526 44.9
DCAR_008625 Daucus carota HOM05D001113 ORTHO05D000968 1.8e-109 400.6 414 53.6
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 1.6e-108 397.5 556 43.0
Sopen10g005790 Solanum pennellii HOM05D004707 ORTHO05D005837 1.6e-108 397.5 561 42.8
EL10Ac1g00374 Beta vulgaris HOM05D004707 ORTHO05D005837 4.5e-108 396.0 558 41.8
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 6.5e-107 392.1 551 44.3
Carub.0006s3698 Capsella rubella HOM05D004707 ORTHO05D005837 1.2e-103 381.3 459 46.4
ClCG05G001380 Citrullus lanatus HOM05D004707 ORTHO05D005837 1.2e-103 381.3 524 45.0
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 3.3e-103 379.8 433 48.5
vmacro20907 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 7.5e-103 378.6 498 46.4
Gohir.A12G107750 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.3e-102 377.9 538 44.8
ATR0661G226 Amborella trichopoda HOM05D004707 ORTHO05D005837 2.2e-102 377.1 554 42.1
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 6.3e-102 375.6 379 52.2
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 1.8e-101 374.0 372 53.0
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 1.8e-101 374.0 456 46.9
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 1.8e-101 374.0 372 53.0
Hund16663 Selenicereus undatus HOM05D004707 ORTHO05D005837 2.4e-101 373.6 577 41.1
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 3.1e-101 373.2 374 52.4
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 7.0e-101 372.1 379 52.0
ECA234G0026 Erigeron canadensis HOM05D004707 ORTHO05D005837 4.5e-100 369.4 413 49.6
Aqoxy5G00593 Aquilegia oxysepala HOM05D004707 ORTHO05D005837 1.0e-99 368.2 425 48.9
AUR62004395 Chenopodium quinoa HOM05D004707 ORTHO05D005837 5.0e-99 365.9 537 43.8
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 8.5e-99 365.2 531 44.1
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 4.2e-98 362.8 458 47.2
Solyc10g012050.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 6.1e-97 359.0 533 41.3
AUR62022601 Chenopodium quinoa HOM05D004707 ORTHO05D005837 3.0e-96 356.7 539 42.9
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 6.8e-96 355.5 419 48.2
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 2.2e-94 350.5 430 47.2
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 6.3e-94 349.0 409 47.9
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 1.8e-93 347.4 397 48.1
Atru.chr5.540 Acer truncatum HOM05D004707 ORTHO05D005837 1.4e-85 321.2 415 45.8
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 5.4e-85 319.3 436 40.8
Cpa.g.sc11.45 Carica papaya HOM05D004707 ORTHO05D005837 7.0e-85 318.9 409 45.2
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 2.0e-84 317.4 433 43.2
unitig_26.g9294 Utricularia gibba HOM05D004707 ORTHO05D005837 3.3e-82 310.1 356 48.0
Psat4g156520 Pisum sativum HOM05D004707 ORTHO05D005837 7.3e-82 308.9 417 45.3
TPR.G14976 Trifolium pratense HOM05D004707 ORTHO05D005837 2.0e-79 300.8 426 44.4
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 2.6e-79 300.4 462 40.9
Peaxi162Scf00020g01222 Petunia axillaris HOM05D004707 ORTHO05D005837 1.3e-78 298.1 438 42.2
Migut.B01788 Erythranthe guttata HOM05D004707 ORTHO05D005837 1.9e-77 294.3 506 39.3
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 1.1e-74 285.0 450 37.3
Nitab4.5_0000200g0180 Nicotiana tabacum HOM05D004707 ORTHO05D005837 2.8e-73 280.4 283 52.7
Pp3c10_20950 Physcomitrium patens HOM05D004707 ORTHO05D005837 3.0e-59 233.8 439 33.9
AT4G00234 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 1.4e-56 224.9 254 48.4
Mapoly0001s0022 Marchantia polymorpha HOM05D004707 ORTHO05D005837 2.6e-55 220.7 370 34.6
SMO116G0175 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 4.4e-55 219.9 374 34.8
SEGI_13365 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 2.2e-54 217.6 255 44.7
Pp3c15_19020 Physcomitrium patens HOM05D004707 ORTHO05D005837 9.6e-50 202.2 346 35.0
Pp3c14_810 Physcomitrium patens HOM05D004707 ORTHO05D005837 3.1e-48 197.2 319 37.0
MD01G1068400 Malus domestica HOM05D004707 ORTHO05D005837 5.8e-47 193.0 233 50.2
Pp3c9_20150 Physcomitrium patens HOM05D004707 ORTHO05D005837 7.6e-47 192.6 335 34.3
AagrBONN_evm.TU.Sc2ySwM_344.1481 Anthoceros agrestis HOM05D004707 ORTHO05D005837 3.0e-43 180.6 284 39.1
CDE04G1515 Ceratophyllum demersum HOM05D004707 ORTHO05D005837 4.8e-41 173.3 176 53.4
Hma1.2p1_0071F.1_g037910 Hydrangea macrophylla HOM05D004707 ORTHO05D005837 5.3e-32 143.3 99 67.7
Rhsim05G0008500 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.2e-31 142.1 219 39.3
Atru.ctg942.22 Acer truncatum HOM05D004707 ORTHO05D005837 5.8e-31 139.8 236 39.8
Cpa.g.sc11.48 Carica papaya HOM05D004707 ORTHO05D005837 4.9e-30 136.7 95 68.4
Rhsim05G0021600 Rhododendron simsii HOM05D004707 ORTHO05D005837 6.5e-30 136.3 221 38.0
Rhsim07G0181500 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.9e-26 124.8 415 27.7
SEGI_23190 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 1.1e-24 119.0 107 50.5
Migut.B01027 Erythranthe guttata HOM05D004707 ORTHO05D005837 1.6e-17 95.1 167 34.7
HanXRQChr09g0268301 Helianthus annuus HOM05D004707 ORTHO05D005837 1.6e-17 95.1 111 46.8
HanXRQChr11g0349701 Helianthus annuus HOM05D004707 ORTHO05D005837 2.8e-17 94.4 92 52.2
HanXRQChr17g0534491 Helianthus annuus HOM05D004707 ORTHO05D005837 2.8e-17 94.4 92 52.2
MBI09_g26550_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 3.7e-17 94.0 109 52.3
SMO361G0110 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 3.4e-15 87.4 298 23.8
TAR626G0135 Trochodendron aralioides HOM05D004707 ORTHO05D005837 5.5e-13 80.1 69 62.3
SMO361G0690 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 6.1e-12 76.6 288 24.7
Migut.B01028 Erythranthe guttata HOM05D004707 ORTHO05D005837 1.0e-11 75.9 111 46.8
Lsat_1_v5_gn_4_48081 Lactuca sativa HOM05D004707 ORTHO05D005837 2.3e-11 74.7 176 32.4
Pp3c3_12760 Physcomitrium patens HOM05D004707 ORTHO05D005837 2.3e-11 74.7 297 23.2
Pp3c13_20730 Physcomitrium patens HOM05D004707 ORTHO05D005837 2.0e-10 71.6 234 23.5
Pp3c9_20120 Physcomitrium patens HOM05D004707 ORTHO05D005837 6.3e-09 66.6 177 27.1
Lsat_1_v5_gn_4_48041 Lactuca sativa HOM05D004707 ORTHO05D005837 8.2e-09 66.2 63 47.6


User provided reference genes

Program Settings