Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 1.2e-120 436.4 203 100.0
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.4e-105 386.3 198 90.4
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 9.8e-99 363.6 199 81.4
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 3.7e-98 361.7 196 83.2
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 8.3e-98 360.5 199 81.9
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.4e-97 359.8 195 82.6
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 1.4e-97 359.8 196 81.1
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 9.1e-97 357.1 199 81.4
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 9.1e-97 357.1 199 81.4
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 2.0e-96 355.9 195 83.6
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.0e-96 355.9 199 81.4
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.0e-96 355.9 195 81.0
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 2.0e-96 355.9 199 81.4
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 2.9e-95 352.1 195 79.0
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 2.9e-95 352.1 195 81.5
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 3.8e-95 351.7 199 81.4
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 6.6e-95 350.9 194 78.9
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 8.6e-95 350.5 194 79.9
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 1.1e-94 350.1 195 79.0
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 1.9e-94 349.4 195 79.5
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 1.2e-93 346.7 199 78.4
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 2.1e-93 345.9 199 77.9
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 2.8e-93 345.5 194 79.4
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 3.6e-93 345.1 194 80.9
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 3.6e-93 345.1 194 81.4
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 4.7e-93 344.7 194 80.9
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 4.7e-93 344.7 194 80.9
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 4.7e-93 344.7 194 78.9
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 6.1e-93 344.4 199 78.9
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 8.0e-93 344.0 198 78.3
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 8.0e-93 344.0 198 78.3
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 8.0e-93 344.0 198 78.3
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 1.8e-92 342.8 193 80.8
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 1.8e-92 342.8 193 80.8
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 1.8e-92 342.8 193 80.8
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 1.8e-92 342.8 199 78.9
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 1.8e-92 342.8 193 80.3
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 1.8e-92 342.8 194 77.8
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.3e-92 342.4 194 80.4
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 2.3e-92 342.4 193 80.8
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 4.0e-92 341.7 199 76.4
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 5.2e-92 341.3 193 80.3
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 6.8e-92 340.9 193 80.3
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 6.8e-92 340.9 195 76.4
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 6.8e-92 340.9 194 78.9
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 6.8e-92 340.9 195 75.4
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 8.9e-92 340.5 199 76.9
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 1.2e-91 340.1 193 79.8
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 1.5e-91 339.7 195 78.5
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 2.0e-91 339.3 198 76.8
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 2.6e-91 339.0 195 75.4
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 2.6e-91 339.0 195 76.9
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 4.4e-91 338.2 194 79.9
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 4.4e-91 338.2 198 76.8
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 5.7e-91 337.8 194 77.8
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 5.7e-91 337.8 198 76.8
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 5.7e-91 337.8 198 76.3
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 5.7e-91 337.8 202 75.7
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 5.7e-91 337.8 194 76.8
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 7.5e-91 337.4 194 75.8
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 1.3e-90 336.7 193 77.7
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.7e-90 336.3 199 74.9
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 1.7e-90 336.3 194 77.8
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 2.2e-90 335.9 194 78.9
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 2.2e-90 335.9 199 75.9
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 2.2e-90 335.9 197 75.6
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 2.2e-90 335.9 195 74.9
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 2.2e-90 335.9 194 77.3
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 2.9e-90 335.5 193 77.2
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 3.7e-90 335.1 197 75.1
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 4.9e-90 334.7 192 78.1
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 8.3e-90 334.0 199 75.4
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 1.4e-89 333.2 211 71.1
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 1.4e-89 333.2 190 77.4
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 5.4e-89 331.3 194 76.3
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 5.4e-89 331.3 193 77.7
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 1.2e-88 330.1 192 75.0
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 1.2e-88 330.1 194 75.8
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 1.2e-88 330.1 195 75.4
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 1.6e-88 329.7 195 75.9
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.0e-88 329.3 197 73.6
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 3.5e-88 328.6 202 72.3
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 4.6e-88 328.2 196 74.0
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 4.6e-88 328.2 193 75.1
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 5.9e-88 327.8 195 73.3
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 5.9e-88 327.8 198 74.7
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 1.0e-87 327.0 194 72.7
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 1.0e-87 327.0 195 75.4
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 8.6e-87 323.9 198 73.7
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 8.6e-87 323.9 196 70.9
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 3.3e-86 322.0 194 70.1
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 4.3e-86 321.6 197 72.6
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 7.3e-86 320.9 189 74.1
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 2.1e-85 319.3 198 69.7
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 2.1e-85 319.3 192 72.9
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 2.8e-85 318.9 189 73.5
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 3.6e-85 318.5 201 71.6
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 3.6e-85 318.5 190 74.7
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 1.0e-84 317.0 194 75.3
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 3.1e-84 315.5 195 73.8
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 6.8e-84 314.3 194 72.2
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.2e-83 313.5 196 71.4
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 1.4e-81 306.6 198 66.7
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.9e-81 306.2 188 73.9
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.9e-81 306.2 196 69.4
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 5.4e-81 304.7 187 73.3
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.7e-80 302.4 197 70.1
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 4.6e-80 301.6 195 69.2
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.7e-79 299.7 193 69.4
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 1.9e-78 296.2 190 68.9
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 9.5e-78 293.9 193 65.3
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 3.6e-77 292.0 197 65.5
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 4.7e-77 291.6 193 65.3
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 8.1e-77 290.8 189 69.3
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 1.8e-76 289.7 190 68.4
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 1.8e-76 289.7 197 66.0
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 3.1e-76 288.9 185 68.6
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 2.6e-75 285.8 197 65.0
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 7.5e-75 284.3 193 65.8
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.3e-74 283.5 187 68.4
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 1.3e-74 283.5 196 65.3
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 2.2e-74 282.7 167 73.7
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 3.7e-74 282.0 196 64.8
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 4.9e-74 281.6 194 68.0
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 4.1e-73 278.5 195 63.6
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 9.2e-73 277.3 196 62.2
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 4.6e-72 275.0 193 61.7
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 6.0e-72 274.6 193 63.2
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 7.8e-72 274.2 190 67.9
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 1.7e-71 273.1 187 64.7
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 9.5e-70 267.3 190 66.3
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 2.1e-69 266.2 190 66.3
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 2.1e-69 266.2 190 66.3
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 2.1e-69 266.2 190 66.3
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 2.1e-69 266.2 190 66.3
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 2.8e-69 265.8 154 77.9
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 3.6e-69 265.4 190 65.8
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 4.7e-69 265.0 191 61.3
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 6.2e-69 264.6 190 65.8
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 1.8e-68 263.1 190 61.6
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 7.6e-67 257.7 196 60.7
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 1.7e-66 256.5 192 60.4
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 6.0e-64 248.1 188 56.4
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 1.7e-63 246.5 195 57.4
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 7.3e-62 241.1 187 56.7
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 6.8e-60 234.6 198 58.1
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 4.4e-59 231.9 184 57.1
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 4.4e-59 231.9 189 56.6
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 7.6e-59 231.1 201 52.7
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 9.9e-59 230.7 188 60.1
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.3e-58 230.3 205 55.1
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 4.9e-58 228.4 137 75.2
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 3.2e-57 225.7 182 55.5
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 3.2e-57 225.7 192 51.6
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 3.9e-55 218.8 189 54.0
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 6.6e-55 218.0 189 51.9
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 1.5e-54 216.9 197 51.3
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 2.8e-53 212.6 191 50.3
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 8.1e-53 211.1 131 72.5
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 1.1e-52 210.7 188 52.7
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 1.8e-52 209.9 184 52.7
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 7.6e-51 204.5 193 50.8
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.4e-49 200.3 153 58.2
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 1.9e-49 199.9 182 52.7
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 4.6e-48 195.3 152 59.2
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 2.3e-47 193.0 135 68.9
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 8.7e-47 191.0 123 65.0
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 1.3e-45 187.2 188 45.2
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 1.1e-44 184.1 273 37.7
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.4e-41 172.9 109 71.6
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 7.4e-38 161.4 97 76.3
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.7e-34 150.2 94 67.0
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 3.1e-28 129.4 69 82.6
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 9.3e-25 117.9 92 57.6
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 2.3e-15 86.7 60 66.7
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 2.9e-10 69.7 50 64.0
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 3.0e-07 59.7 42 52.4
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 2.0e-06 57.0 43 58.1


User provided reference genes

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