Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0190300 Rhododendron simsii HOM05D008555 ORTHO05D010760 0.0e+00 1285.4 667 100.0
vmacro20136 Vaccinium macrocarpon HOM05D008555 ORTHO05D010760 1.1e-188 664.1 625 63.0
CSS0010375 Camellia sinensis var. sinensis HOM05D008555 ORTHO05D010760 3.9e-152 542.7 680 51.3
Dinv37190 Davidia involucrata HOM05D008555 ORTHO05D010760 5.8e-132 475.7 727 45.7
GSVIVG01034198001 Vitis vinifera HOM05D008555 ORTHO05D010760 9.7e-87 325.5 662 38.2
QL07p047905 Quercus lobata HOM05D008555 ORTHO05D010760 8.2e-78 295.8 483 40.6
QL07p031190 Quercus lobata HOM05D008555 ORTHO05D010760 1.1e-77 295.4 483 40.4
Cfa017405 Carpinus fangiana HOM05D008555 ORTHO05D010760 9.1e-77 292.4 783 33.2
Haze_20761 Corylus avellana HOM05D008555 ORTHO05D010760 5.5e-74 283.1 796 29.9
MD04G1125500 Malus domestica HOM05D008555 ORTHO05D010760 1.6e-65 255.0 668 33.4
TAR623G0003 Trochodendron aralioides HOM05D008555 ORTHO05D010760 4.0e-64 250.4 656 35.2
FAN05G3093 Fragaria x ananassa HOM05D008555 ORTHO05D010760 3.2e-58 230.7 657 31.4
Thecc.05G042000 Theobroma cacao HOM05D008555 ORTHO05D010760 5.5e-58 229.9 593 34.1
MBI05_g06539_MAGBIO Magnolia biondii HOM05D008555 ORTHO05D010760 2.8e-57 227.6 420 37.9
Nn2g12801 Nelumbo nucifera HOM05D008555 ORTHO05D010760 6.1e-57 226.5 658 33.0
FvH4_6g14100 Fragaria vesca HOM05D008555 ORTHO05D010760 1.8e-56 224.9 657 31.1
Prupe.6G252400 Prunus persica HOM05D008555 ORTHO05D010760 4.9e-54 216.9 407 38.1
Lsat_1_v5_gn_8_82700 Lactuca sativa HOM05D008555 ORTHO05D010760 4.1e-53 213.8 325 41.2
Duzib093G2048 Durio zibethinus HOM05D008555 ORTHO05D010760 5.9e-52 209.9 512 33.8
FAN09G2752 Fragaria x ananassa HOM05D008555 ORTHO05D010760 5.9e-52 209.9 656 31.2
Gohir.A09G157300 Gossypium hirsutum HOM05D008555 ORTHO05D010760 1.1e-50 205.7 470 36.2
Cc06_g02800 Coffea canephora HOM05D008555 ORTHO05D010760 1.5e-50 205.3 210 52.4
Hund09315 Selenicereus undatus HOM05D008555 ORTHO05D010760 3.3e-50 204.1 442 35.7
Sc20g0004840 Simmondsia chinensis HOM05D008555 ORTHO05D010760 1.2e-49 202.2 412 36.2
RcHm_v2.0_Chr3g0467001 Rosa chinensis HOM05D008555 ORTHO05D010760 1.6e-49 201.8 641 30.1
Manes.08G133801 Manihot esculenta HOM05D008555 ORTHO05D010760 2.1e-49 201.4 619 31.8
Migut.J00343 Erythranthe guttata HOM05D008555 ORTHO05D010760 4.7e-49 200.3 417 37.2
Eucgr.A01250 Eucalyptus grandis HOM05D008555 ORTHO05D010760 1.8e-48 198.4 440 35.5
Gohir.D09G152600 Gossypium hirsutum HOM05D008555 ORTHO05D010760 5.2e-48 196.8 660 29.7
SGA_v2.0_scaffold126G33802 Striga asiatica HOM05D008555 ORTHO05D010760 8.9e-48 196.1 411 37.5
FAN02G2195 Fragaria x ananassa HOM05D008555 ORTHO05D010760 1.2e-47 195.7 657 29.7
ECA236G1276 Erigeron canadensis HOM05D008555 ORTHO05D010760 9.8e-47 192.6 205 45.9
HanXRQChr04g0124781 Helianthus annuus HOM05D008555 ORTHO05D010760 1.3e-46 192.2 206 50.5
HPP92_014313 Vanilla planifolia HOM05D008555 ORTHO05D010760 1.6e-44 185.3 322 38.8
SalBow3G1082 Salvia bowleyana HOM05D008555 ORTHO05D010760 3.0e-43 181.0 639 29.4
AUR62042775 Chenopodium quinoa HOM05D008555 ORTHO05D010760 3.6e-41 174.1 328 38.4
AUR62019574 Chenopodium quinoa HOM05D008555 ORTHO05D010760 4.4e-39 167.2 420 32.6
Aqoxy4G02966 Aquilegia oxysepala HOM05D008555 ORTHO05D010760 4.9e-38 163.7 556 29.1
PSO339G2550 Papaver somniferum HOM05D008555 ORTHO05D010760 4.1e-37 160.6 190 46.8
PSO384G5088 Papaver somniferum HOM05D008555 ORTHO05D010760 2.7e-36 157.9 190 46.8
EL10Ac1g01982 Beta vulgaris HOM05D008555 ORTHO05D010760 2.8e-33 147.9 456 30.9
Lsat_1_v5_gn_3_51821 Lactuca sativa HOM05D008555 ORTHO05D010760 1.4e-29 135.6 155 49.7
Oeu024357.1 Olea europaea HOM05D008555 ORTHO05D010760 9.2e-29 132.9 540 30.9
COL.COLO4_14830 Corchorus olitorius HOM05D008555 ORTHO05D010760 3.4e-23 114.4 89 58.4
Gorai.006G174100 Gossypium raimondii HOM05D008555 ORTHO05D010760 2.4e-21 108.2 215 38.1
Actinidia26453 Actinidia chinensis HOM05D056927 ORTHO05D038143 1.4e-08 65.9 65 56.9
FAN14G0987 Fragaria x ananassa HOM05D008555 ORTHO05D010760 4.0e-08 64.3 413 24.9
Ca_23253_v3 Cicer arietinum L. HOM05D001613 ORTHO05D001556 1.5e-07 62.4 130 33.1
Actinidia26451 Actinidia chinensis HOM05D056927 ORTHO05D038143 2.0e-07 62.0 56 60.7
arahy.Tifrunner.gnm1.ann1.4S52N9 Arachis hypogaea HOM05D001613 ORTHO05D001556 2.6e-07 61.6 125 27.2
VMungo1309G2316 Vigna mungo HOM05D008141 ORTHO05D008631 4.5e-07 60.8 140 27.9
LjContig00155g0013817 Lotus japonicus HOM05D001613 ORTHO05D001556 1.3e-06 59.3 120 33.3
CiPaw.07G202400 Carya illinoinensis HOM05D001613 ORTHO05D001556 1.7e-06 58.9 125 32.0
Os09g0346900 Oryza sativa ssp. japonica HOM05D001613 ORTHO05D001556 1.7e-06 58.9 130 31.5
Phvul.010G145800 Phaseolus vulgaris HOM05D001613 ORTHO05D001556 2.2e-06 58.5 132 28.8
DCAR_019583 Daucus carota HOM05D001613 ORTHO05D001556 2.9e-06 58.2 134 32.8
Oeu061323.1 Olea europaea HOM05D001613 ORTHO05D001556 3.8e-06 57.8 125 30.4
LjContig00155g0015542 Lotus japonicus HOM05D001613 ORTHO05D001556 4.9e-06 57.4 135 31.9
Solyc10g007130.4 Solanum lycopersicum HOM05D001613 ORTHO05D001556 4.9e-06 57.4 128 31.2
Sopen10g003030 Solanum pennellii HOM05D001613 ORTHO05D001556 4.9e-06 57.4 128 31.2
unitig_0.g2570 Utricularia gibba HOM05D001613 ORTHO05D001556 4.9e-06 57.4 123 29.3
Actinidia35234 Actinidia chinensis HOM05D004118 ORTHO05D001556 6.4e-06 57.0 123 31.7
arahy.Tifrunner.gnm1.ann1.440ZV2 Arachis hypogaea HOM05D001613 ORTHO05D001556 6.4e-06 57.0 124 31.5
CiPaw.12G116600 Carya illinoinensis HOM05D001613 ORTHO05D001556 6.4e-06 57.0 126 30.2
Lj3g0027617 Lotus japonicus HOM05D001613 ORTHO05D001556 6.4e-06 57.0 145 27.6
Lj3g0005400 Lotus japonicus HOM05D001613 ORTHO05D001556 8.4e-06 56.6 118 33.9


User provided reference genes

Program Settings