Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 0.0e+00 1383.2 694 100.0
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 2.3e-309 1065.1 719 76.9
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 1.2e-305 1052.7 719 76.1
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 9.5e-303 1043.1 801 70.9
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 8.4e-267 923.7 707 66.9
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 3.5e-265 918.3 707 66.5
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 1.1e-263 913.3 706 67.0
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 1.2e-260 903.3 709 66.1
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 5.8e-260 901.0 709 66.0
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 4.6e-257 891.3 709 65.3
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 1.3e-256 889.8 716 64.0
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 8.7e-256 887.1 718 64.1
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 1.2e-252 876.7 707 64.4
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 7.6e-252 874.0 705 64.3
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 1.1e-250 870.2 711 64.1
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 5.1e-248 861.3 716 62.0
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 2.5e-247 859.0 706 63.6
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 2.8e-246 855.5 711 63.9
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 1.1e-245 853.6 709 62.9
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 2.0e-244 849.4 709 62.9
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 5.8e-244 847.8 712 62.8
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 6.5e-243 844.3 719 62.0
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.2e-241 840.1 709 62.8
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 1.2e-241 840.1 709 63.3
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 1.0e-240 837.0 714 62.0
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 1.3e-240 836.6 719 61.8
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 5.1e-240 834.7 721 62.1
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 8.7e-240 833.9 700 62.6
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 1.1e-239 833.6 708 61.0
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 1.9e-239 832.8 715 62.1
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 4.3e-239 831.6 721 61.9
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 9.6e-239 830.5 712 61.5
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 1.6e-238 829.7 712 62.1
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 2.1e-238 829.3 709 61.6
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 2.1e-238 829.3 710 60.8
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 2.8e-238 828.9 709 60.4
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 1.4e-237 826.6 709 60.2
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 2.4e-237 825.9 709 60.8
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 3.1e-237 825.5 713 61.9
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 4.5e-236 821.6 709 59.5
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 1.0e-235 820.5 713 61.7
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 3.8e-235 818.5 708 60.5
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.8e-235 818.5 717 62.2
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 2.5e-234 815.8 704 59.7
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 2.7e-233 812.4 700 59.7
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 5.1e-232 808.1 710 59.6
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 5.1e-232 808.1 710 59.9
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 4.3e-231 805.1 709 60.1
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 1.3e-230 803.5 719 59.4
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 1.6e-230 803.1 710 60.0
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 2.2e-230 802.7 709 59.7
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 3.7e-230 802.0 709 59.7
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 4.8e-230 801.6 720 59.7
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 8.2e-230 800.8 709 60.8
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.2e-228 797.0 736 57.7
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 1.2e-228 797.0 700 59.4
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 5.9e-228 794.7 704 59.5
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 7.7e-228 794.3 612 65.2
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 1.1e-226 790.4 673 62.4
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 2.5e-226 789.3 704 59.4
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 3.2e-226 788.9 708 59.2
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 9.4e-226 787.3 709 59.8
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 3.6e-225 785.4 754 56.1
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 1.8e-224 783.1 686 61.5
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 6.7e-224 781.2 720 58.6
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 2.0e-215 753.1 654 60.4
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 4.8e-214 748.4 545 68.4
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 7.0e-213 744.6 714 56.6
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 6.5e-211 738.0 525 69.9
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 2.7e-209 732.6 714 55.7
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 5.7e-207 724.9 580 63.3
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 9.7e-207 724.2 701 56.2
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 1.8e-205 719.9 507 72.0
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 7.7e-204 714.5 503 70.6
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 1.3e-203 713.8 532 66.7
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 1.9e-202 709.9 709 55.4
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 1.4e-197 693.7 453 75.1
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 7.0e-197 691.4 725 53.7
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 4.5e-196 688.7 736 53.0
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.1e-189 667.5 524 63.5
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 1.2e-188 664.1 574 62.2
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 3.0e-184 649.4 747 50.5
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 7.5e-183 644.8 714 50.6
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 6.4e-182 641.7 716 51.4
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 1.1e-176 624.4 711 50.4
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 2.9e-166 589.7 741 45.2
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 8.9e-160 568.2 395 70.9
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 2.2e-158 563.5 740 44.3
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 1.7e-150 537.3 354 74.0
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 4.9e-150 535.8 354 73.7
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 1.3e-145 521.2 509 56.6
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 5.4e-141 505.8 738 40.4
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.1e-138 498.0 503 55.1
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.5e-138 497.7 347 68.6
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 5.6e-138 495.7 347 68.3
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 3.1e-136 490.0 418 59.1
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.4e-135 486.5 347 67.1
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 2.0e-127 460.7 800 40.5
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 2.5e-125 453.8 312 73.4
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 3.1e-120 436.8 361 60.7
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 1.8e-107 394.4 780 35.9
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 9.7e-106 388.7 866 33.0
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 1.9e-101 374.4 719 35.7
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 1.2e-100 371.7 315 63.5
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 3.8e-94 350.1 339 55.2
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 3.2e-93 347.1 318 57.2
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 1.4e-83 315.1 739 32.7
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 7.5e-74 282.7 206 70.9
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 4.9e-73 280.0 193 69.9
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 3.1e-72 277.3 224 63.4
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 4.1e-72 276.9 192 69.3
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 1.5e-61 241.9 175 66.9
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 8.9e-59 232.6 186 62.9
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 1.1e-56 225.7 264 51.1
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 6.6e-54 216.5 672 28.9
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 1.4e-51 208.8 332 41.3
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.6e-50 204.5 298 43.6
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 5.4e-48 196.8 189 54.5
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 1.6e-47 195.3 168 58.9
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 1.2e-36 159.1 208 49.0
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 2.6e-34 151.4 156 55.8
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 1.4e-32 145.6 137 55.5
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 9.6e-29 132.9 148 53.4
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 7.6e-26 123.2 166 49.4
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 7.6e-26 123.2 147 51.7
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 7.1e-24 116.7 152 46.1
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 3.9e-22 110.9 157 42.7
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 6.9e-19 100.1 144 43.1
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.1e-11 76.3 51 68.6
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.4e-11 75.9 76 52.6
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 4.0e-11 74.3 48 68.8
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 6.9e-11 73.6 152 36.8
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 3.8e-09 67.8 35 97.1
Lsat_1_v5_gn_5_94521 Lactuca sativa HOM05D000428 ORTHO05D022850 5.5e-08 63.9 71 47.9


User provided reference genes

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