Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0012900 Rhododendron simsii HOM05D005173 ORTHO05D006214 2.8e-178 628.6 346 100.0
Dinv42364 Davidia involucrata HOM05D005173 ORTHO05D006214 9.3e-134 480.7 339 72.6
CSS0048515 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 2.1e-133 479.6 342 71.9
Dinv25585 Davidia involucrata HOM05D005173 ORTHO05D006214 7.9e-133 477.6 348 70.1
Hma1.2p1_0797F.1_g219350 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 3.0e-132 475.7 339 71.7
Actinidia39689 Actinidia chinensis HOM05D005173 ORTHO05D006214 3.9e-132 475.3 341 71.6
vmacro17173 Vaccinium macrocarpon HOM05D005173 ORTHO05D006214 3.9e-132 475.3 413 63.7
ClCG03G015280 Citrullus lanatus HOM05D005173 ORTHO05D006214 1.3e-130 470.3 335 70.7
MELO3C015504.2 Cucumis melo HOM05D005173 ORTHO05D006214 1.3e-130 470.3 335 70.7
CsaV3_1G040770 Cucumis sativus L. HOM05D005173 ORTHO05D006214 4.8e-130 468.4 335 70.7
Nitab4.5_0001488g0160 Nicotiana tabacum HOM05D005173 ORTHO05D006214 6.3e-130 468.0 322 73.3
Lj7C682G9 Lonicera japonica HOM05D005173 ORTHO05D006214 1.8e-129 466.5 319 72.7
TAR636G1303 Trochodendron aralioides HOM05D005173 ORTHO05D006214 6.9e-129 464.5 334 70.7
Sopen07g020470 Solanum pennellii HOM05D005173 ORTHO05D006214 9.1e-129 464.2 340 69.4
PGSC0003DMG400020952 Solanum tuberosum HOM05D005173 ORTHO05D006214 9.1e-129 464.2 340 69.4
Duzib168G0179 Durio zibethinus HOM05D005173 ORTHO05D006214 1.2e-128 463.8 327 69.7
Nitab4.5_0013150g0020 Nicotiana tabacum HOM05D005173 ORTHO05D006214 1.2e-128 463.8 322 72.7
GSVIVG01015121001 Vitis vinifera HOM05D005173 ORTHO05D006214 1.2e-128 463.8 339 70.2
Solyc07g041200.3 Solanum lycopersicum HOM05D005173 ORTHO05D006214 2.0e-128 463.0 340 69.1
PGR142G0948 Punica granatum HOM05D005173 ORTHO05D006214 2.6e-128 462.6 343 69.4
Thecc.09G081500 Theobroma cacao HOM05D005173 ORTHO05D006214 2.6e-128 462.6 336 69.6
Lalb_Chr07g0181031 Lupinus albus HOM05D005173 ORTHO05D006214 3.4e-128 462.2 341 68.9
MD15G1213300 Malus domestica HOM05D005173 ORTHO05D006214 3.4e-128 462.2 336 69.9
COL.COLO4_18139 Corchorus olitorius HOM05D005173 ORTHO05D006214 4.5e-128 461.8 340 68.8
Nn8g38732 Nelumbo nucifera HOM05D005173 ORTHO05D006214 4.5e-128 461.8 331 70.4
CAN.G88.5 Capsicum annuum HOM05D005173 ORTHO05D006214 5.9e-128 461.5 338 71.0
Cpa.g.sc28.94 Carica papaya HOM05D005173 ORTHO05D006214 5.9e-128 461.5 339 69.0
Phvul.003G133200 Phaseolus vulgaris HOM05D005173 ORTHO05D006214 5.9e-128 461.5 338 69.2
RcHm_v2.0_Chr2g0094221 Rosa chinensis HOM05D005173 ORTHO05D006214 5.9e-128 461.5 342 68.7
Atru.chr7.1658 Acer truncatum HOM05D005173 ORTHO05D006214 7.7e-128 461.1 342 69.0
Prupe.7G203600 Prunus persica HOM05D005173 ORTHO05D006214 1.0e-127 460.7 336 69.3
Gorai.013G226300 Gossypium raimondii HOM05D005173 ORTHO05D006214 1.3e-127 460.3 337 69.1
Glyma.13G107800 Glycine max HOM05D005173 ORTHO05D006214 1.7e-127 459.9 341 69.2
Glyma.17G051500 Glycine max HOM05D005173 ORTHO05D006214 2.2e-127 459.5 341 68.9
EL10Ac8g19142 Beta vulgaris HOM05D005173 ORTHO05D006214 3.8e-127 458.8 342 68.7
Lj4g0027115 Lotus japonicus HOM05D005173 ORTHO05D006214 3.8e-127 458.8 341 68.3
Sed0012764 Sechium edule HOM05D005173 ORTHO05D006214 5.0e-127 458.4 335 68.7
Potri.006G145200 Populus trichocarpa HOM05D005173 ORTHO05D006214 8.5e-127 457.6 336 69.3
CiPaw.03G210500 Carya illinoinensis HOM05D005173 ORTHO05D006214 1.4e-126 456.8 340 68.5
VMungo1215G2902 Vigna mungo HOM05D005173 ORTHO05D006214 1.9e-126 456.4 341 68.9
FvH4_1g08150 Fragaria vesca HOM05D005173 ORTHO05D006214 2.5e-126 456.1 335 69.0
FAN19G2713 Fragaria x ananassa HOM05D005173 ORTHO05D006214 3.2e-126 455.7 335 69.0
FAN23G0270 Fragaria x ananassa HOM05D005173 ORTHO05D006214 4.2e-126 455.3 335 69.0
Migut.L01541 Erythranthe guttata HOM05D005173 ORTHO05D006214 5.5e-126 454.9 335 70.1
Manes.03G037700 Manihot esculenta HOM05D005173 ORTHO05D006214 5.5e-126 454.9 344 67.7
Potri.018G064800 Populus trichocarpa HOM05D005173 ORTHO05D006214 5.5e-126 454.9 340 67.9
AUR62029004 Chenopodium quinoa HOM05D005173 ORTHO05D006214 7.2e-126 454.5 327 70.3
Duzib150G1290 Durio zibethinus HOM05D005173 ORTHO05D006214 7.2e-126 454.5 339 67.8
Ah.14g085040 Amaranthus hybridus HOM05D005173 ORTHO05D006214 9.4e-126 454.1 327 68.8
FAN26G2726 Fragaria x ananassa HOM05D005173 ORTHO05D006214 9.4e-126 454.1 346 67.3
MD02G1086100 Malus domestica HOM05D005173 ORTHO05D006214 1.2e-125 453.8 338 68.6
FAN26G1854 Fragaria x ananassa HOM05D005173 ORTHO05D006214 1.6e-125 453.4 335 68.7
Lalb_Chr12g0200011 Lupinus albus HOM05D005173 ORTHO05D006214 1.6e-125 453.4 334 68.6
QL02p061251 Quercus lobata HOM05D005173 ORTHO05D006214 1.6e-125 453.4 334 69.2
TAR624G0255 Trochodendron aralioides HOM05D005173 ORTHO05D006214 1.6e-125 453.4 338 68.9
AUR62025172 Chenopodium quinoa HOM05D005173 ORTHO05D006214 2.1e-125 453.0 327 70.3
Gohir.A13G192200 Gossypium hirsutum HOM05D005173 ORTHO05D006214 2.1e-125 453.0 337 67.7
FAN28G2824 Fragaria x ananassa HOM05D005173 ORTHO05D006214 2.7e-125 452.6 335 68.7
Sc18g0002360 Simmondsia chinensis HOM05D005173 ORTHO05D006214 6.1e-125 451.4 341 67.2
Haze_25966 Corylus avellana HOM05D005173 ORTHO05D006214 1.0e-124 450.7 376 62.5
Ciclev10008959m.g Citrus clementina HOM05D005173 ORTHO05D006214 1.4e-124 450.3 339 67.6
arahy.Tifrunner.gnm1.ann1.6AS4TW Arachis hypogaea HOM05D005173 ORTHO05D006214 3.0e-124 449.1 348 67.5
Ca_21308_v3 Cicer arietinum L. HOM05D005173 ORTHO05D006214 3.0e-124 449.1 341 67.2
Aqoxy7G01101 Aquilegia oxysepala HOM05D005173 ORTHO05D006214 8.8e-124 447.6 341 66.0
Eucgr.C00843 Eucalyptus grandis HOM05D005173 ORTHO05D006214 1.1e-123 447.2 340 66.8
Aa31LG1G14140 Aethionema arabicum HOM05D005173 ORTHO05D006214 1.5e-123 446.8 320 71.2
arahy.Tifrunner.gnm1.ann1.9Y0BJI Arachis hypogaea HOM05D005173 ORTHO05D006214 4.4e-123 445.3 348 67.0
THA.LOC104799624 Tarenaya hassleriana HOM05D005173 ORTHO05D006214 4.4e-123 445.3 334 69.2
Manes.16G098000 Manihot esculenta HOM05D005173 ORTHO05D006214 5.7e-123 444.9 342 68.1
Peaxi162Scf00246g00045 Petunia axillaris HOM05D005173 ORTHO05D006214 5.7e-123 444.9 306 72.2
TWI32G0591 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 7.4e-123 444.5 336 66.4
Sed0013811 Sechium edule HOM05D005173 ORTHO05D006214 9.7e-123 444.1 335 67.5
HanXRQChr01g0007561 Helianthus annuus HOM05D005173 ORTHO05D006214 1.3e-122 443.7 339 66.1
PSO063G3756 Papaver somniferum HOM05D005173 ORTHO05D006214 1.3e-122 443.7 339 65.5
CANSAT56G2861 Cannabis sativa HOM05D005173 ORTHO05D006214 1.7e-122 443.4 335 67.8
PSO421G0551 Papaver somniferum HOM05D005173 ORTHO05D006214 3.7e-122 442.2 339 65.5
BcaB08g36505 Brassica carinata HOM05D005173 ORTHO05D006214 4.8e-122 441.8 330 68.2
Cc00_g19370 Coffea canephora HOM05D005173 ORTHO05D006214 4.8e-122 441.8 338 66.9
Sabra06G0114800 Salix brachista HOM05D005173 ORTHO05D006214 6.3e-122 441.4 329 68.7
MSTRG.19482 Avicennia marina HOM05D005173 ORTHO05D006214 8.2e-122 441.0 340 67.1
TWI63G0548 Tripterygium wilfordii HOM05D005173 ORTHO05D006214 1.1e-121 440.7 339 66.7
Gohir.D13G197600 Gossypium hirsutum HOM05D005173 ORTHO05D006214 1.8e-121 439.9 337 67.4
MSTRG.26457 Avicennia marina HOM05D005173 ORTHO05D006214 2.4e-121 439.5 331 67.7
Medtr4g125660 Medicago truncatula HOM05D005173 ORTHO05D006214 2.4e-121 439.5 330 68.8
A10p19490 Brassica napus HOM05D005173 ORTHO05D006214 4.1e-121 438.7 340 65.9
BraA10t44025Z Brassica rapa HOM05D005173 ORTHO05D006214 5.3e-121 438.3 330 67.3
Sp6g23940 Schrenkiella parvula HOM05D005173 ORTHO05D006214 5.3e-121 438.3 329 67.5
Psat4g016960 Pisum sativum HOM05D005173 ORTHO05D006214 9.1e-121 437.6 339 66.7
A02p06290 Brassica napus HOM05D005173 ORTHO05D006214 1.5e-120 436.8 329 66.9
BraA02t05577Z Brassica rapa HOM05D005173 ORTHO05D006214 1.5e-120 436.8 329 66.9
HanXRQChr09g0237971 Helianthus annuus HOM05D005173 ORTHO05D006214 2.0e-120 436.4 339 66.1
Thhalv10014184m.g Eutrema salsugineum HOM05D005173 ORTHO05D006214 2.6e-120 436.0 330 66.7
Lsat_1_v5_gn_5_142000 Lactuca sativa HOM05D005173 ORTHO05D006214 4.5e-120 435.3 338 64.8
BolC2t07046H Brassica oleracea HOM05D005173 ORTHO05D006214 1.3e-119 433.7 329 66.6
BcaC04g19437 Brassica carinata HOM05D005173 ORTHO05D006214 2.2e-119 433.0 330 66.4
C09p55690 Brassica napus HOM05D005173 ORTHO05D006214 2.2e-119 433.0 336 65.5
CARHR192290 Cardamine hirsuta HOM05D005173 ORTHO05D006214 8.5e-119 431.0 332 66.9
AL6G32050 Arabidopsis lyrata HOM05D005173 ORTHO05D006214 1.9e-118 429.9 332 66.0
Sabra18G0057400 Salix brachista HOM05D005173 ORTHO05D006214 1.9e-118 429.9 380 61.1
BolC9t58435H Brassica oleracea HOM05D005173 ORTHO05D006214 2.5e-118 429.5 330 66.1
SalBow1G6961 Salvia bowleyana HOM05D005173 ORTHO05D006214 2.5e-118 429.5 359 63.2
BcaB05g22843 Brassica carinata HOM05D005173 ORTHO05D006214 4.2e-118 428.7 329 66.9
Carub.0006s1885 Capsella rubella HOM05D005173 ORTHO05D006214 4.2e-118 428.7 328 66.2
ECA234G3859 Erigeron canadensis HOM05D005173 ORTHO05D006214 1.6e-117 426.8 326 66.3
CDE04G2820 Ceratophyllum demersum HOM05D005173 ORTHO05D006214 4.7e-117 425.2 336 64.3
AT5G20520 Arabidopsis thaliana HOM05D005173 ORTHO05D006214 8.0e-117 424.5 332 65.4
DCAR_024724 Daucus carota HOM05D005173 ORTHO05D006214 1.0e-116 424.1 328 64.6
SGA_v2.0_scaffold21G09462 Striga asiatica HOM05D005173 ORTHO05D006214 1.4e-116 423.7 368 62.0
Oeu054818.3 Olea europaea HOM05D005173 ORTHO05D006214 1.8e-116 423.3 378 60.3
Lsat_1_v5_gn_7_34821 Lactuca sativa HOM05D005173 ORTHO05D006214 6.7e-116 421.4 331 65.9
MSTRG.10526 Avicennia marina HOM05D005173 ORTHO05D006214 8.8e-116 421.0 335 64.8
Zm00001eb108940 Zea mays HOM05D005173 ORTHO05D006214 1.8e-108 396.7 333 59.8
Os07g0608300 Oryza sativa ssp. japonica HOM05D005173 ORTHO05D006214 2.0e-107 393.3 328 59.8
HPP92_006149 Vanilla planifolia HOM05D005173 ORTHO05D006214 5.7e-107 391.7 332 60.8
DCAR_028284 Daucus carota HOM05D005173 ORTHO05D006214 3.1e-105 386.0 325 60.0
unitig_22.g5750 Utricularia gibba HOM05D005173 ORTHO05D006214 4.5e-104 382.1 339 59.6
SHI33752 Sapria himalayana HOM05D005173 ORTHO05D006214 2.5e-102 376.3 339 58.7
SMO203G0271 Selaginella moellendorffii HOM05D005173 ORTHO05D006214 1.5e-94 350.5 326 55.8
Mapoly0002s0260 Marchantia polymorpha HOM05D005173 ORTHO05D006214 1.6e-93 347.1 356 51.4
QL02p061362 Quercus lobata HOM05D005173 ORTHO05D006214 6.8e-92 341.7 188 85.6
BcaB05g22835 Brassica carinata HOM05D005173 ORTHO05D006214 1.1e-86 324.3 184 82.6
DCAR_031940 Daucus carota HOM05D005173 ORTHO05D006214 1.4e-84 317.4 328 51.8
BcaC03g13770 Brassica carinata HOM05D005173 ORTHO05D006214 1.2e-83 314.3 311 56.3
CBR_g3819 Chara braunii HOM05D005173 ORTHO05D006214 1.7e-82 310.5 312 52.2
ATR0598G148 Amborella trichopoda HOM05D005173 ORTHO05D006214 8.0e-77 291.6 265 58.9
Pp3c15_14310 Physcomitrium patens HOM05D005173 ORTHO05D006214 2.3e-76 290.0 329 47.1
Actinidia25222 Actinidia chinensis HOM05D005173 ORTHO05D006214 7.0e-73 278.5 245 61.2
Rhsim03G0230600 Rhododendron simsii HOM05D005173 ORTHO05D006214 6.2e-69 265.4 189 70.9
TPR.G23232 Trifolium pratense HOM05D005173 ORTHO05D006214 2.7e-56 223.4 136 75.7
TPR.G9429 Trifolium pratense HOM05D005173 ORTHO05D006214 7.8e-56 221.9 204 58.3
HPP92_009231 Vanilla planifolia HOM05D005173 ORTHO05D006214 1.0e-55 221.5 133 74.4
HPP92_009230 Vanilla planifolia HOM05D005173 ORTHO05D006214 3.9e-47 193.0 207 53.1
Cre03.g160100 Chlamydomonas reinhardtii HOM05D005173 ORTHO05D006214 3.4e-35 153.3 308 32.8
BNapus_Darmor_BZH_scaffold_38p01550 Brassica napus HOM05D005173 ORTHO05D006214 1.9e-25 120.9 85 74.1
ClCG07G005020 Citrullus lanatus HOM05D005173 ORTHO05D006214 7.9e-24 115.5 77 76.6
SGA_v2.0_scaffold23G10070 Striga asiatica HOM05D005173 ORTHO05D006214 1.5e-22 111.3 60 86.7
Cfa026742 Carpinus fangiana HOM05D005173 ORTHO05D006214 5.3e-20 102.8 181 38.7
Hma1.2p1_0440F.1_g153610 Hydrangea macrophylla HOM05D005173 ORTHO05D006214 2.0e-19 100.9 58 82.8
PRCOL_00002900 Prasinoderma coloniale HOM05D005173 ORTHO05D006214 1.0e-18 98.6 308 26.9
CSS0040146 Camellia sinensis var. sinensis HOM05D005173 ORTHO05D006214 5.5e-17 92.8 47 85.1
Lsat_1_v5_gn_2_31840 Lactuca sativa HOM05D005173 ORTHO05D006214 2.3e-15 87.4 57 71.9
Lsat_1_v5_gn_5_98841 Lactuca sativa HOM05D005173 ORTHO05D006214 1.4e-12 78.2 52 75.0
Hma1.2p1_0536F.1_g174110 Hydrangea macrophylla HOM05D005096 ORTHO05D006214 2.2e-10 70.9 44 77.3
Nn2g12540 Nelumbo nucifera HOM05D005173 ORTHO05D006214 3.8e-10 70.1 38 65.8
SEGI_17932 Sequoiadendron giganteum HOM05D005173 ORTHO05D006214 2.1e-08 64.3 38 81.6
MSTRG.9934 Avicennia marina HOM05D003117 ORTHO05D003612 3.3e-06 57.0 150 31.3
PSO210G0990 Papaver somniferum HOM05D003117 ORTHO05D003612 3.3e-06 57.0 151 29.8
COL.COLO4_15763 Corchorus olitorius HOM05D003117 ORTHO05D003612 5.7e-06 56.2 154 29.9


User provided reference genes

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