Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0008500 Rhododendron simsii HOM05D004707 ORTHO05D005837 9.0e-142 506.9 256 100.0
Rhsim05G0021600 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.1e-136 490.0 256 96.9
Prupe.2G174600 Prunus persica HOM05D004707 ORTHO05D005837 2.1e-37 160.2 215 40.0
TAR375G0400 Trochodendron aralioides HOM05D004707 ORTHO05D005837 3.9e-36 156.0 204 43.6
Actinidia18541 Actinidia chinensis HOM05D004707 ORTHO05D005837 7.4e-35 151.8 215 41.9
Dinv43847 Davidia involucrata HOM05D004707 ORTHO05D005837 1.3e-34 151.0 213 39.4
CSS0041396 Camellia sinensis var. sinensis HOM05D004707 ORTHO05D005837 8.1e-34 148.3 215 39.5
Lj9C587T4 Lonicera japonica HOM05D004707 ORTHO05D005837 1.4e-33 147.5 213 39.9
Lalb_Chr04g0259171 Lupinus albus HOM05D004707 ORTHO05D005837 2.4e-33 146.7 204 39.2
Hund16663 Selenicereus undatus HOM05D004707 ORTHO05D005837 3.1e-33 146.4 212 40.6
Cpa.g.sc11.45 Carica papaya HOM05D004707 ORTHO05D005837 9.0e-33 144.8 209 37.8
COL.COLO4_12751 Corchorus olitorius HOM05D004707 ORTHO05D005837 9.0e-33 144.8 211 39.3
FAN06G2758 Fragaria x ananassa HOM05D004707 ORTHO05D005837 9.0e-33 144.8 216 38.9
Glyma.16G033400 Glycine max HOM05D004707 ORTHO05D005837 9.0e-33 144.8 213 36.6
Peaxi162Scf00585g00318 Petunia axillaris HOM05D004707 ORTHO05D005837 9.0e-33 144.8 220 38.6
Rhsim01G0164800 Rhododendron simsii HOM05D004707 ORTHO05D005837 9.0e-33 144.8 212 40.6
Ciclev10028150m.g Citrus clementina HOM05D004707 ORTHO05D005837 1.2e-32 144.4 212 39.2
Rhsim07G0012400 Rhododendron simsii HOM05D004707 ORTHO05D005837 1.2e-32 144.4 219 39.3
Gorai.004G041800 Gossypium raimondii HOM05D004707 ORTHO05D005837 1.5e-32 144.1 212 41.5
vmacro13252 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 2.0e-32 143.7 220 38.2
Lj3g0007734 Lotus japonicus HOM05D004707 ORTHO05D005837 2.6e-32 143.3 204 39.2
Oeu015224.1 Olea europaea HOM05D004707 ORTHO05D005837 2.6e-32 143.3 212 38.2
Thecc.01G355200 Theobroma cacao HOM05D004707 ORTHO05D005837 2.6e-32 143.3 212 39.6
Gohir.A08G032300 Gossypium hirsutum HOM05D004707 ORTHO05D005837 4.5e-32 142.5 212 40.6
Lalb_Chr17g0339181 Lupinus albus HOM05D004707 ORTHO05D005837 4.5e-32 142.5 215 36.7
Phvul.010G102400 Phaseolus vulgaris HOM05D004707 ORTHO05D005837 7.6e-32 141.7 213 35.7
PGR031G2856 Punica granatum HOM05D004707 ORTHO05D005837 7.6e-32 141.7 212 37.3
RcHm_v2.0_Chr1g0357041 Rosa chinensis HOM05D004707 ORTHO05D005837 7.6e-32 141.7 215 37.7
TWI59G0961 Tripterygium wilfordii HOM05D004707 ORTHO05D005837 7.6e-32 141.7 203 35.5
CiPaw.01G064900 Carya illinoinensis HOM05D004707 ORTHO05D005837 9.9e-32 141.4 213 36.6
VMungo0331G0696 Vigna mungo HOM05D004707 ORTHO05D005837 9.9e-32 141.4 213 36.2
Ah.05g180290 Amaranthus hybridus HOM05D004707 ORTHO05D005837 1.3e-31 141.0 214 38.8
Medtr8g028760 Medicago truncatula HOM05D004707 ORTHO05D005837 1.3e-31 141.0 204 38.7
Sopen10g005800 Solanum pennellii HOM05D004707 ORTHO05D005837 1.7e-31 140.6 217 39.2
Nn6g33309 Nelumbo nucifera HOM05D004707 ORTHO05D005837 2.2e-31 140.2 213 38.0
TPR.G14976 Trifolium pratense HOM05D004707 ORTHO05D005837 2.2e-31 140.2 204 36.8
arahy.Tifrunner.gnm1.ann1.YM6R3T Arachis hypogaea HOM05D004707 ORTHO05D005837 2.9e-31 139.8 213 37.1
FAN10G2784 Fragaria x ananassa HOM05D004707 ORTHO05D005837 2.9e-31 139.8 216 37.5
FAN01G2554 Fragaria x ananassa HOM05D004707 ORTHO05D005837 3.8e-31 139.4 216 38.0
FAN10G1283 Fragaria x ananassa HOM05D004707 ORTHO05D005837 4.9e-31 139.0 216 37.5
Glyma.07G067400 Glycine max HOM05D004707 ORTHO05D005837 4.9e-31 139.0 213 35.7
Gohir.D12G111000 Gossypium hirsutum HOM05D004707 ORTHO05D005837 4.9e-31 139.0 212 38.2
Nitab4.5_0000690g0060 Nicotiana tabacum HOM05D004707 ORTHO05D005837 4.9e-31 139.0 213 38.0
arahy.Tifrunner.gnm1.ann1.HL3201 Arachis hypogaea HOM05D004707 ORTHO05D005837 6.4e-31 138.7 213 36.6
Gorai.008G120200 Gossypium raimondii HOM05D004707 ORTHO05D005837 6.4e-31 138.7 212 38.2
Psat4g156520 Pisum sativum HOM05D004707 ORTHO05D005837 6.4e-31 138.7 213 36.2
Solyc10g012060.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 6.4e-31 138.7 217 39.2
Cc00_g17840 Coffea canephora HOM05D004707 ORTHO05D005837 8.4e-31 138.3 212 37.7
FvH4_7g15010 Fragaria vesca HOM05D004707 ORTHO05D005837 8.4e-31 138.3 216 37.5
FAN06G3707 Fragaria x ananassa HOM05D004707 ORTHO05D005837 8.4e-31 138.3 216 37.5
Sc06g0007250 Simmondsia chinensis HOM05D004707 ORTHO05D005837 8.4e-31 138.3 213 37.6
PSO063G6595 Papaver somniferum HOM05D004707 ORTHO05D005837 1.1e-30 137.9 212 38.2
FAN03G0218 Fragaria x ananassa HOM05D004707 ORTHO05D005837 1.4e-30 137.5 216 36.6
Manes.01G254000 Manihot esculenta HOM05D004707 ORTHO05D005837 1.4e-30 137.5 207 36.7
Ca_23597_v3 Cicer arietinum L. HOM05D004707 ORTHO05D005837 1.9e-30 137.1 214 34.6
CAN.G91.14 Capsicum annuum HOM05D004707 ORTHO05D005837 3.2e-30 136.3 217 38.7
Eucgr.D02313 Eucalyptus grandis HOM05D004707 ORTHO05D005837 5.5e-30 135.6 213 38.0
Atru.chr5.540 Acer truncatum HOM05D004707 ORTHO05D005837 7.1e-30 135.2 213 37.1
Potri.014G088200 Populus trichocarpa HOM05D004707 ORTHO05D005837 7.1e-30 135.2 220 38.2
vmacro20909 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 7.1e-30 135.2 212 38.7
Aqoxy5G00593 Aquilegia oxysepala HOM05D004707 ORTHO05D005837 2.1e-29 133.7 211 35.1
CANSAT56G0368 Cannabis sativa HOM05D004707 ORTHO05D005837 3.5e-29 132.9 215 36.7
CsaV3_3G008770 Cucumis sativus L. HOM05D004707 ORTHO05D005837 4.6e-29 132.5 215 36.7
Lsat_1_v5_gn_4_43000 Lactuca sativa HOM05D004707 ORTHO05D005837 4.6e-29 132.5 212 36.3
Haze_15544 Corylus avellana HOM05D004707 ORTHO05D005837 7.9e-29 131.7 213 36.6
MELO3C006094.2 Cucumis melo HOM05D004707 ORTHO05D005837 7.9e-29 131.7 215 35.8
Sed0023991 Sechium edule HOM05D004707 ORTHO05D005837 1.0e-28 131.3 220 35.5
THA.LOC104825856 Tarenaya hassleriana HOM05D004707 ORTHO05D005837 1.0e-28 131.3 204 35.3
EL10Ac1g00374 Beta vulgaris HOM05D004707 ORTHO05D005837 1.3e-28 131.0 215 36.7
Gohir.D08G043200 Gossypium hirsutum HOM05D004707 ORTHO05D005837 5.1e-28 129.0 212 39.2
Potri.002G162100 Populus trichocarpa HOM05D004707 ORTHO05D005837 8.7e-28 128.3 217 38.2
Solyc10g012050.3 Solanum lycopersicum HOM05D004707 ORTHO05D005837 1.9e-27 127.1 213 36.2
Aa31LG5G670 Aethionema arabicum HOM05D004707 ORTHO05D005837 2.5e-27 126.7 203 34.0
Sopen10g005790 Solanum pennellii HOM05D004707 ORTHO05D005837 2.5e-27 126.7 213 35.7
DCAR_008625 Daucus carota HOM05D001113 ORTHO05D000968 3.3e-27 126.3 205 38.0
Nitab4.5_0000200g0180 Nicotiana tabacum HOM05D004707 ORTHO05D005837 3.3e-27 126.3 179 41.3
unitig_749.g14344 Utricularia gibba HOM05D004707 ORTHO05D006649 4.3e-27 125.9 213 34.3
C02p37880 Brassica napus HOM05D000315 ORTHO05D000527 2.8e-26 123.2 212 34.0
BolC2t09805H Brassica oleracea HOM05D004707 ORTHO05D005837 2.8e-26 123.2 212 34.0
A02p24040 Brassica napus HOM05D000315 ORTHO05D000527 3.7e-26 122.9 212 34.0
BraA02t07399Z Brassica rapa HOM05D000315 ORTHO05D000527 3.7e-26 122.9 212 34.0
ATR0661G226 Amborella trichopoda HOM05D004707 ORTHO05D005837 4.8e-26 122.5 204 35.3
BcaC03g16035 Brassica carinata HOM05D004707 ORTHO05D005837 4.8e-26 122.5 212 34.0
AUR62004395 Chenopodium quinoa HOM05D004707 ORTHO05D005837 4.8e-26 122.5 191 39.8
BcaB01g02199 Brassica carinata HOM05D004707 ORTHO05D005837 6.2e-26 122.1 212 33.5
CARHR248350 Cardamine hirsuta HOM05D004707 ORTHO05D005837 6.2e-26 122.1 212 34.0
GSVIVG01026989001 Vitis vinifera HOM05D004707 ORTHO05D005837 1.8e-25 120.6 157 43.9
Zm00001eb073200 Zea mays HOM05D004707 ORTHO05D005837 2.4e-25 120.2 218 33.9
Carub.0006s3698 Capsella rubella HOM05D004707 ORTHO05D005837 3.1e-25 119.8 204 33.3
Sp6g00340 Schrenkiella parvula HOM05D004707 ORTHO05D005837 3.1e-25 119.8 212 33.5
SGA_v2.0_scaffold95G28817 Striga asiatica HOM05D004707 ORTHO05D005837 3.1e-25 119.8 244 32.4
AUR62022601 Chenopodium quinoa HOM05D004707 ORTHO05D005837 6.9e-25 118.6 181 40.9
AT4G00290 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 9.0e-25 118.2 212 33.5
ClCG05G001380 Citrullus lanatus HOM05D004707 ORTHO05D005837 9.0e-25 118.2 181 38.1
AL6G53230 Arabidopsis lyrata HOM05D004707 ORTHO05D005837 1.5e-24 117.5 212 33.0
ECA234G0026 Erigeron canadensis HOM05D004707 ORTHO05D005837 1.5e-24 117.5 215 34.9
SHI13401 Sapria himalayana HOM05D004707 ORTHO05D005837 1.5e-24 117.5 237 33.3
vmacro20907 Vaccinium macrocarpon HOM05D004707 ORTHO05D005837 3.8e-23 112.8 213 37.6
HPP92_025632 Vanilla planifolia HOM05D004707 ORTHO05D005837 1.4e-22 110.9 203 34.5
Os04g0578700 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 1.9e-22 110.5 203 33.5
unitig_26.g9294 Utricularia gibba HOM05D004707 ORTHO05D005837 2.7e-21 106.7 210 31.0
Os02g0681000 Oryza sativa ssp. japonica HOM05D004707 ORTHO05D005837 1.0e-20 104.8 203 31.0
SEGI_13365 Sequoiadendron giganteum HOM05D004707 ORTHO05D005837 1.0e-20 104.8 171 38.6
Gohir.A12G107750 Gossypium hirsutum HOM05D004707 ORTHO05D005837 1.3e-20 104.4 230 33.9
AT4G00234 Arabidopsis thaliana HOM05D004707 ORTHO05D005837 2.3e-20 103.6 168 35.7
Thhalv10028609m.g Eutrema salsugineum HOM05D004707 ORTHO05D005837 6.7e-20 102.1 210 31.9
Migut.B01788 Erythranthe guttata HOM05D004707 ORTHO05D005837 1.9e-19 100.5 207 31.4
MD01G1068400 Malus domestica HOM05D004707 ORTHO05D005837 4.3e-19 99.4 174 36.2
HanXRQChr16g0520681 Helianthus annuus HOM05D004707 ORTHO05D005837 2.8e-18 96.7 226 30.5
SMO116G0175 Selaginella moellendorffii HOM05D004707 ORTHO05D005837 2.8e-18 96.7 200 29.5
Pp3c10_20950 Physcomitrium patens HOM05D004707 ORTHO05D005837 3.7e-18 96.3 199 30.7
AagrBONN_evm.TU.Sc2ySwM_344.1481 Anthoceros agrestis HOM05D004707 ORTHO05D005837 8.2e-18 95.1 205 29.8
Peaxi162Scf00020g01222 Petunia axillaris HOM05D004707 ORTHO05D005837 3.1e-17 93.2 208 30.3
Pp3c9_20150 Physcomitrium patens HOM05D004707 ORTHO05D005837 5.3e-17 92.4 199 29.6
Pp3c15_19020 Physcomitrium patens HOM05D004707 ORTHO05D005837 1.1e-14 84.7 201 29.9
Pp3c14_810 Physcomitrium patens HOM05D004707 ORTHO05D005837 9.7e-11 71.6 224 27.7
HanXRQChr09g0268301 Helianthus annuus HOM05D004707 ORTHO05D005837 1.1e-06 58.2 98 39.8
HanXRQChr11g0349701 Helianthus annuus HOM05D004707 ORTHO05D005837 1.1e-06 58.2 80 42.5
HanXRQChr17g0534491 Helianthus annuus HOM05D004707 ORTHO05D005837 1.1e-06 58.2 80 42.5
MBI09_g26550_MAGBIO Magnolia biondii HOM05D004707 ORTHO05D005837 1.1e-06 58.2 100 40.0


User provided reference genes

Program Settings