Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 2219.9 1104 100.0
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1779.6 1222 76.3
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1694.5 1131 76.7
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1585.1 1134 71.9
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1573.5 1132 71.9
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1552.7 1133 70.5
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1548.1 1132 68.9
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1547.3 1132 70.2
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1544.6 1132 69.7
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1538.9 1133 69.3
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1531.9 1132 68.8
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1530.8 1132 69.1
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1520.0 1132 68.1
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1516.9 1131 68.3
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1509.6 1133 68.0
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1509.2 1131 68.7
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1503.0 1128 67.5
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1502.3 1134 68.5
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1499.2 1134 67.4
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1497.6 1132 67.9
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1494.2 1130 67.7
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1490.3 1134 67.3
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1486.5 1135 67.5
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1486.1 1134 66.8
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1480.7 1132 67.1
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1477.6 1133 67.1
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1477.2 1106 66.3
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1471.8 1131 66.4
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1471.4 1122 67.9
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1469.9 1131 66.5
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1468.8 1135 67.5
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1467.6 1132 66.6
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1466.8 1132 66.8
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1464.5 1197 63.5
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1463.7 1023 74.3
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1463.0 1138 66.0
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1457.2 1151 66.0
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1456.4 1131 65.6
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1453.3 1151 65.9
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1452.2 1133 65.9
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1450.6 1129 66.1
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1448.3 1114 66.8
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1445.3 1036 72.2
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1443.7 1130 64.5
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1442.9 1133 65.9
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1442.6 1132 65.4
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1442.2 1131 65.3
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1438.7 1131 66.2
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1436.0 1131 66.3
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1435.6 1133 65.8
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1434.9 1138 64.1
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1432.9 1218 62.5
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1431.4 1132 64.5
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1430.2 1138 63.9
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1429.8 1132 65.5
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1428.7 1128 64.2
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1423.7 1135 64.3
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1408.3 1132 64.5
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1404.8 1135 63.7
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1404.0 1133 63.1
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1399.0 1131 64.1
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1399.0 1119 65.4
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1396.7 1128 64.3
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1392.5 1132 62.6
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1387.5 1131 63.7
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1386.7 1132 62.6
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1385.5 1132 62.6
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1385.5 1131 63.6
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1384.0 1131 63.0
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1383.2 1132 62.7
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1383.2 1133 63.8
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1382.9 1133 62.6
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1380.2 1138 63.7
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1377.8 1133 62.4
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1375.9 1130 63.6
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1369.0 1129 62.1
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1369.0 1131 62.7
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1366.3 912 76.8
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1365.1 1140 62.8
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1357.4 1131 62.4
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1351.7 1136 60.5
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1346.6 1054 65.8
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1346.3 1142 62.6
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1340.9 1135 61.2
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1336.6 1174 59.5
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1335.5 1139 60.8
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1317.8 1341 53.7
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1265.8 896 71.4
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1234.6 1130 57.9
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1224.2 877 71.0
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1179.5 906 65.8
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1129.8 867 65.6
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 0.0e+00 1112.1 1008 59.5
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 2.7e-304 1048.9 777 68.1
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 9.1e-300 1033.9 1159 49.6
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 6.0e-283 978.0 1137 46.4
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 7.3e-265 917.9 1146 45.5
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 2.6e-262 909.4 780 60.4
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.4e-260 903.7 710 65.9
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 2.1e-251 873.2 1001 51.4
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 6.2e-240 835.1 736 58.6
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 4.0e-231 805.8 595 68.2
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 7.4e-225 785.0 594 65.3
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 4.4e-201 706.1 698 54.9
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 6.3e-200 702.2 527 65.7
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 1.8e-199 700.7 525 65.3
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 2.6e-198 696.8 530 65.1
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 3.8e-197 693.0 548 62.8
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 9.4e-196 688.3 547 62.2
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 6.3e-192 675.6 573 59.2
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 7.0e-191 672.2 527 64.9
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 1.0e-189 668.3 521 62.8
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 1.7e-189 667.5 527 62.0
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 3.8e-189 666.4 613 60.5
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 3.6e-187 659.8 524 62.0
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 3.1e-183 646.7 526 62.4
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 5.9e-174 615.9 560 57.0
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 1.2e-161 575.1 531 57.8
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 2.4e-159 567.4 535 55.9
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 1.2e-153 548.5 428 64.7
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 2.2e-152 544.3 527 53.7
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 1.2e-147 528.5 443 61.2
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 1.8e-146 524.6 400 67.2
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 3.4e-145 520.4 443 60.3
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.6e-139 500.4 405 63.5
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 1.8e-130 471.5 1164 30.3
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 3.8e-120 437.2 242 86.8
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 4.2e-119 433.7 267 77.2
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 2.5e-116 424.5 281 75.1
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 5.3e-106 390.2 348 60.3
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 2.9e-104 384.4 237 80.2
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.1e-102 378.3 243 74.5
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 7.9e-102 376.3 213 84.5
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 2.3e-101 374.8 266 71.8
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 1.8e-98 365.2 301 63.1
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 5.9e-73 280.4 156 85.9
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 2.6e-68 265.0 259 52.9
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 1.4e-66 259.2 210 62.9
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 1.8e-61 242.3 206 62.1
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 3.1e-53 214.9 183 65.6
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 4.3e-47 194.5 156 63.5
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 5.6e-47 194.1 154 66.2
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 3.6e-46 191.4 119 74.8
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 1.1e-42 179.9 176 56.8
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 4.3e-39 167.9 110 75.5
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 7.8e-33 147.1 106 69.8
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 1.0e-32 146.7 97 74.2
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 9.9e-28 130.2 83 68.7
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 3.5e-25 121.7 85 62.4
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 2.4e-21 109.0 55 87.3
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 1.5e-20 106.3 81 65.4
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 4.4e-20 104.8 69 72.5
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 4.4e-20 104.8 77 68.8
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 5.4e-18 97.8 76 71.1
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 1.6e-17 96.3 103 51.5
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 1.3e-16 93.2 58 69.0
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 6.6e-16 90.9 53 79.2
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 2.8e-14 85.5 173 34.7
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 3.6e-14 85.1 55 69.1
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 1.1e-13 83.6 74 60.8
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 1.4e-13 83.2 137 40.1
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 6.9e-13 80.9 74 55.4
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 9.0e-13 80.5 54 66.7
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 2.0e-12 79.3 137 38.7
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 3.8e-11 75.1 44 75.0
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 9.3e-10 70.5 74 50.0
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 7.9e-09 67.4 41 70.7
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 2.3e-08 65.9 53 66.0
MBI07_g17483_MAGBIO Magnolia biondii HOM05D000553 ORTHO05D243158 2.8e-06 58.9 59 57.6
MBI03_g26335_MAGBIO Magnolia biondii HOM05D000553 ORTHO05D244274 3.7e-06 58.5 59 57.6


User provided reference genes

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