Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0129000 Rhododendron simsii HOM05D003809 ORTHO05D003935 1.6e-126 456.1 223 100.0
Actinidia20726 Actinidia chinensis HOM05D003809 ORTHO05D003935 6.4e-19 98.6 306 27.8
vmacro08854 Vaccinium macrocarpon HOM05D003809 ORTHO05D003935 1.6e-14 84.0 45 82.2
Peaxi162Scf00141g00342 Petunia axillaris HOM05D003809 ORTHO05D003935 1.4e-13 80.9 47 70.2
CSS0024242 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 5.3e-13 79.0 45 75.6
Eucgr.K02988 Eucalyptus grandis HOM05D003809 ORTHO05D003935 9.0e-13 78.2 46 67.4
CAN.G772.1 Capsicum annuum HOM05D003809 ORTHO05D003935 1.2e-12 77.8 43 72.1
Hma1.2p1_0362F.1_g136090 Hydrangea macrophylla HOM05D003809 ORTHO05D003935 1.5e-12 77.4 43 74.4
Lj2A76T85 Lonicera japonica HOM05D003809 ORTHO05D003935 2.0e-12 77.0 300 25.3
Nitab4.5_0000335g0110 Nicotiana tabacum HOM05D003809 ORTHO05D003935 7.6e-12 75.1 42 73.8
Nitab4.5_0008420g0020 Nicotiana tabacum HOM05D003809 ORTHO05D003935 7.6e-12 75.1 42 73.8
Ciclev10011409m.g Citrus clementina HOM05D003809 ORTHO05D003935 1.0e-11 74.7 41 73.2
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 1.7e-11 73.9 44 65.9
MSTRG.10226 Avicennia marina HOM05D003809 ORTHO05D003935 3.8e-11 72.8 43 67.4
Rhsim13G0070300 Rhododendron simsii HOM05D003809 ORTHO05D003935 3.8e-11 72.8 44 68.2
GSVIVG01033976001 Vitis vinifera HOM05D003809 ORTHO05D003935 4.9e-11 72.4 46 63.0
CsaV3_3G033890 Cucumis sativus L. HOM05D003809 ORTHO05D003935 8.4e-11 71.6 42 66.7
FAN14G0248 Fragaria x ananassa HOM05D003809 ORTHO05D003935 8.4e-11 71.6 45 66.7
FAN14G4099 Fragaria x ananassa HOM05D003809 ORTHO05D003935 8.4e-11 71.6 45 66.7
Nn2g11447 Nelumbo nucifera HOM05D003809 ORTHO05D003935 8.4e-11 71.6 42 66.7
Os05g0446900 Oryza sativa ssp. japonica HOM05D003809 ORTHO05D003935 8.4e-11 71.6 43 65.1
Potri.016G114500 Populus trichocarpa HOM05D003809 ORTHO05D003935 8.4e-11 71.6 45 66.7
Atru.chr8.2220 Acer truncatum HOM05D003809 ORTHO05D003935 1.1e-10 71.2 44 68.2
Duzib106G1511 Durio zibethinus HOM05D003809 ORTHO05D003935 1.1e-10 71.2 45 71.1
SalBow4G1747 Salvia bowleyana HOM05D003809 ORTHO05D003935 1.1e-10 71.2 44 59.1
Duzib128G0737 Durio zibethinus HOM05D003809 ORTHO05D003935 1.4e-10 70.9 43 69.8
Nn2g13682 Nelumbo nucifera HOM05D003809 ORTHO05D003935 1.4e-10 70.9 42 66.7
ClCG10G022040 Citrullus lanatus HOM05D003809 ORTHO05D003935 1.9e-10 70.5 42 66.7
MELO3C009176.2 Cucumis melo HOM05D003809 ORTHO05D003935 1.9e-10 70.5 42 66.7
DCAR_018710 Daucus carota HOM05D003809 ORTHO05D003935 1.9e-10 70.5 46 60.9
Gohir.A11G329600 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.9e-10 70.5 43 69.8
Gohir.D11G348800 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.9e-10 70.5 43 69.8
Gorai.007G379100 Gossypium raimondii HOM05D003809 ORTHO05D003935 1.9e-10 70.5 43 69.8
MD12G1164600 Malus domestica HOM05D003809 ORTHO05D003935 1.9e-10 70.5 45 64.4
Sed0009856 Sechium edule HOM05D003809 ORTHO05D003935 1.9e-10 70.5 42 69.0
Solyc09g014400.3 Solanum lycopersicum HOM05D003809 ORTHO05D003935 1.9e-10 70.5 43 62.8
Sopen09g007230 Solanum pennellii HOM05D003809 ORTHO05D003935 1.9e-10 70.5 43 62.8
FvH4_6g11650 Fragaria vesca HOM05D003809 ORTHO05D003935 2.5e-10 70.1 45 64.4
FAN09G2283 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.5e-10 70.1 45 64.4
Manes.09G104500 Manihot esculenta HOM05D003809 ORTHO05D003935 2.5e-10 70.1 45 62.2
Gohir.A09G164500 Gossypium hirsutum HOM05D003809 ORTHO05D003935 3.2e-10 69.7 45 64.4
Prupe.6G275300 Prunus persica HOM05D003809 ORTHO05D003935 3.2e-10 69.7 45 64.4
Sed0014073 Sechium edule HOM05D003809 ORTHO05D003935 3.2e-10 69.7 42 64.3
Cc01_g20760 Coffea canephora HOM05D003809 ORTHO05D003935 4.2e-10 69.3 43 65.1
Cc06_g01490 Coffea canephora HOM05D003809 ORTHO05D003935 4.2e-10 69.3 43 65.1
Pp3c6_22980 Physcomitrium patens HOM05D003809 ORTHO05D003935 4.2e-10 69.3 46 56.5
THA.LOC104816652 Tarenaya hassleriana HOM05D003809 ORTHO05D003935 4.2e-10 69.3 45 62.2
Cpa.g.sc163.14 Carica papaya HOM05D003809 ORTHO05D003935 5.5e-10 68.9 42 61.9
Cfa017221 Carpinus fangiana HOM05D003809 ORTHO05D003935 5.5e-10 68.9 42 66.7
Cfa017222 Carpinus fangiana HOM05D003809 ORTHO05D003935 5.5e-10 68.9 42 66.7
Sabra09G0032300 Salix brachista HOM05D000001 ORTHO05D000003 5.5e-10 68.9 41 63.4
Thecc.05G018100 Theobroma cacao HOM05D003809 ORTHO05D003935 5.5e-10 68.9 45 66.7
Lj3A954G70 Lonicera japonica HOM05D003809 ORTHO05D003935 7.1e-10 68.6 46 60.9
Manes.08G091100 Manihot esculenta HOM05D003809 ORTHO05D003935 7.1e-10 68.6 43 62.8
Potri.006G099200 Populus trichocarpa HOM05D003809 ORTHO05D003935 7.1e-10 68.6 45 64.4
Potri.009G044800 Populus trichocarpa HOM05D003809 ORTHO05D003935 7.1e-10 68.6 41 63.4
CANSAT35G1529 Cannabis sativa HOM05D003809 ORTHO05D003935 1.2e-09 67.8 44 65.9
Migut.L02004 Erythranthe guttata HOM05D003809 ORTHO05D003935 1.2e-09 67.8 47 55.3
Gohir.D09G160100 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.2e-09 67.8 42 64.3
Gorai.006G181700 Gossypium raimondii HOM05D003809 ORTHO05D003935 1.2e-09 67.8 42 64.3
MD04G1150500 Malus domestica HOM05D003809 ORTHO05D003935 1.2e-09 67.8 45 60.0
Sabra06G0076000 Salix brachista HOM05D003809 ORTHO05D003935 1.2e-09 67.8 45 64.4
TAR369G0780 Trochodendron aralioides HOM05D003809 ORTHO05D003935 1.2e-09 67.8 44 61.4
TAR369G1072 Trochodendron aralioides HOM05D003809 ORTHO05D003935 1.2e-09 67.8 44 61.4
TAR623G0913 Trochodendron aralioides HOM05D003809 ORTHO05D003935 1.2e-09 67.8 44 63.6
Oeu055170.1 Olea europaea HOM05D003809 ORTHO05D003935 1.6e-09 67.4 43 60.5
PSO566G0296 Papaver somniferum HOM05D003809 ORTHO05D003935 1.6e-09 67.4 42 61.9
SGA_v2.0_scaffold240G44100 Striga asiatica HOM05D003809 ORTHO05D003935 1.6e-09 67.4 47 55.3
TPR.G13325 Trifolium pratense HOM05D003809 ORTHO05D003935 1.6e-09 67.4 44 63.6
Ca_20297_v3 Cicer arietinum L. HOM05D003809 ORTHO05D003935 2.1e-09 67.0 42 64.3
PSO566G0209 Papaver somniferum HOM05D003809 ORTHO05D003935 2.1e-09 67.0 42 59.5
PGR004G1101 Punica granatum HOM05D003809 ORTHO05D003935 2.1e-09 67.0 42 64.3
HPP92_019882 Vanilla planifolia HOM05D003809 ORTHO05D003935 2.1e-09 67.0 52 55.8
AagrBONN_evm.TU.Sc2ySwM_344.3507 Anthoceros agrestis HOM05D003809 ORTHO05D003935 2.7e-09 66.6 42 54.8
Cpa.g.sc112.34 Carica papaya HOM05D003809 ORTHO05D003935 2.7e-09 66.6 42 59.5
COL.COLO4_14553 Corchorus olitorius HOM05D003809 ORTHO05D003935 2.7e-09 66.6 43 62.8
DCAR_015432 Daucus carota HOM05D003809 ORTHO05D003935 2.7e-09 66.6 46 56.5
FAN02G0645 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.7e-09 66.6 45 62.2
Lj3g0017704 Lotus japonicus HOM05D003809 ORTHO05D003935 2.7e-09 66.6 44 61.4
Lalb_Chr01g0022961 Lupinus albus HOM05D003809 ORTHO05D003935 2.7e-09 66.6 44 59.1
MBI05_g34490_MAGBIO Magnolia biondii HOM05D003809 ORTHO05D003935 2.7e-09 66.6 42 64.3
arahy.Tifrunner.gnm1.ann1.31N575 Arachis hypogaea HOM05D003809 ORTHO05D003935 3.5e-09 66.2 44 61.4
arahy.Tifrunner.gnm1.ann1.3JQR8Y Arachis hypogaea HOM05D003809 ORTHO05D003935 3.5e-09 66.2 44 61.4
Glyma.07G148000 Glycine max HOM05D003809 ORTHO05D003935 3.5e-09 66.2 42 59.5
Medtr4g015550 Medicago truncatula HOM05D003809 ORTHO05D003935 3.5e-09 66.2 44 63.6
PSO566G0289 Papaver somniferum HOM05D003809 ORTHO05D003935 3.5e-09 66.2 45 60.0
Aa31LG1G22880 Aethionema arabicum HOM05D003809 ORTHO05D003935 4.6e-09 65.9 42 59.5
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 4.6e-09 65.9 43 58.1
arahy.Tifrunner.gnm1.ann1.TSB66L Arachis hypogaea HOM05D003809 ORTHO05D003935 6.0e-09 65.5 44 59.1
CiPaw.09G207900 Carya illinoinensis HOM05D003809 ORTHO05D003935 6.0e-09 65.5 42 61.9
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 6.0e-09 65.5 44 61.4
Lsat_1_v5_gn_5_155280 Lactuca sativa HOM05D003809 ORTHO05D003935 6.0e-09 65.5 46 54.3
Lalb_Chr07g0193501 Lupinus albus HOM05D003809 ORTHO05D003935 6.0e-09 65.5 44 59.1
COL.COLO4_19141 Corchorus olitorius HOM05D000001 ORTHO05D000003 7.9e-09 65.1 42 59.5
Glyma.03G062500 Glycine max HOM05D003809 ORTHO05D003935 7.9e-09 65.1 44 61.4
HanXRQChr01g0007011 Helianthus annuus HOM05D003809 ORTHO05D003935 7.9e-09 65.1 46 56.5
Lj1g0000205 Lotus japonicus HOM05D003809 ORTHO05D003935 7.9e-09 65.1 44 59.1
PSO566G0059 Papaver somniferum HOM05D003809 ORTHO05D003935 7.9e-09 65.1 40 62.5
VMungo0331G1847 Vigna mungo HOM05D003809 ORTHO05D003935 7.9e-09 65.1 44 63.6
Glyma.03G061700 Glycine max HOM05D003809 ORTHO05D003935 1.0e-08 64.7 42 61.9
Glyma.03G062800 Glycine max HOM05D003809 ORTHO05D003935 1.0e-08 64.7 42 61.9
Glyma.03G063000 Glycine max HOM05D003809 ORTHO05D003935 1.0e-08 64.7 42 61.9
Glyma.18G199300 Glycine max HOM05D003809 ORTHO05D003935 1.0e-08 64.7 42 57.1
VMungo1383G0216 Vigna mungo HOM05D003809 ORTHO05D003935 1.0e-08 64.7 47 53.2
ATR0618G237 Amborella trichopoda HOM05D003809 ORTHO05D003935 1.3e-08 64.3 42 54.8
CDE03G0216 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 1.3e-08 64.3 42 54.8
Manes.02G120500 Manihot esculenta HOM05D003809 ORTHO05D003935 1.3e-08 64.3 41 56.1
RcHm_v2.0_Chr3g0463311 Rosa chinensis HOM05D003809 ORTHO05D003935 1.3e-08 64.3 45 60.0
CDE04G0185 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 1.8e-08 63.9 42 57.1
AUR62001660 Chenopodium quinoa HOM05D000001 ORTHO05D000003 1.8e-08 63.9 42 61.9
Dinv14451 Davidia involucrata HOM05D003809 ORTHO05D003935 1.8e-08 63.9 42 59.5
Lalb_Chr19g0124721 Lupinus albus HOM05D003809 ORTHO05D003935 1.8e-08 63.9 42 59.5
TWI74G0880 Tripterygium wilfordii HOM05D003809 ORTHO05D003935 1.8e-08 63.9 42 54.8
Phvul.008G105500 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 2.3e-08 63.5 47 51.1
Prupe.6G058700 Prunus persica HOM05D003809 ORTHO05D003935 2.3e-08 63.5 42 59.5
SMO142G0031 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 2.3e-08 63.5 46 54.3
SMO358G0668 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 2.3e-08 63.5 46 54.3
Haze_20987 Corylus avellana HOM05D003809 ORTHO05D003935 3.0e-08 63.2 163 31.3
Thhalv10013736m.g Eutrema salsugineum HOM05D003809 ORTHO05D003935 3.0e-08 63.2 47 55.3
Manes.01G162300 Manihot esculenta HOM05D003809 ORTHO05D003935 3.0e-08 63.2 41 53.7
PSO339G2972 Papaver somniferum HOM05D003809 ORTHO05D003935 3.0e-08 63.2 44 54.5
Psat7g246040 Pisum sativum HOM05D003809 ORTHO05D003935 3.0e-08 63.2 44 61.4
Dinv28631 Davidia involucrata HOM05D003809 ORTHO05D003935 3.9e-08 62.8 42 57.1
Pp3c16_3300 Physcomitrium patens HOM05D003809 ORTHO05D003935 3.9e-08 62.8 46 50.0
AL6G10910 Arabidopsis lyrata HOM05D003809 ORTHO05D003935 5.1e-08 62.4 59 49.2
ECA248G2658 Erigeron canadensis HOM05D003809 ORTHO05D003935 6.7e-08 62.0 48 56.2
Glyma.03G061751 Glycine max HOM05D003809 ORTHO05D003935 6.7e-08 62.0 42 59.5
Glyma.03G061802 Glycine max HOM05D003809 ORTHO05D003935 6.7e-08 62.0 42 59.5
Glyma.03G061852 Glycine max HOM05D003809 ORTHO05D003935 6.7e-08 62.0 42 59.5
Glyma.03G062100 Glycine max HOM05D003809 ORTHO05D003935 6.7e-08 62.0 42 59.5
Glyma.03G062300 Glycine max HOM05D003809 ORTHO05D003935 6.7e-08 62.0 42 59.5
Phvul.010G002900 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 6.7e-08 62.0 50 52.0
FAN16G0765 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.7e-08 61.6 45 48.9
FAN21G3156 Fragaria x ananassa HOM05D003809 ORTHO05D003935 8.7e-08 61.6 45 48.9
FAN25G1218 Fragaria x ananassa HOM05D000001 ORTHO05D000003 8.7e-08 61.6 45 48.9
Mapoly0033s0050 Marchantia polymorpha HOM05D003809 ORTHO05D003935 8.7e-08 61.6 42 54.8
AT5G01260 Arabidopsis thaliana HOM05D003809 ORTHO05D003935 1.1e-07 61.2 43 58.1
SEGI_39495 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 1.1e-07 61.2 46 45.7
Aqoxy4G02610 Aquilegia oxysepala HOM05D003809 ORTHO05D003935 1.5e-07 60.8 45 51.1
Pp3c23_18810 Physcomitrium patens HOM05D028458 ORTHO05D003935 1.5e-07 60.8 43 53.5
CARHR211600 Cardamine hirsuta HOM05D003809 ORTHO05D003935 1.9e-07 60.5 199 26.6
FvH4_3g38430 Fragaria vesca HOM05D003809 ORTHO05D003935 2.5e-07 60.1 46 45.7
unitig_37.g12663 Utricularia gibba HOM05D003809 ORTHO05D003935 2.5e-07 60.1 46 50.0
Zm00001eb289050 Zea mays HOM05D003809 ORTHO05D003935 2.5e-07 60.1 43 55.8
Carub.0006s0062 Capsella rubella HOM05D003809 ORTHO05D003935 3.3e-07 59.7 43 55.8
BraA03t09429Z Brassica rapa HOM05D003809 ORTHO05D003935 4.3e-07 59.3 44 54.5
FAN11G1208 Fragaria x ananassa HOM05D003809 ORTHO05D003935 4.3e-07 59.3 45 46.7
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 4.3e-07 59.3 41 58.5
Glyma.U024600 Glycine max HOM05D003809 ORTHO05D003935 5.7e-07 58.9 42 57.1
BcaNung06532 Brassica carinata HOM05D003809 ORTHO05D003935 9.6e-07 58.2 45 53.3
SEGI_38034 Sequoiadendron giganteum HOM05D003809 ORTHO05D003935 9.6e-07 58.2 43 58.1
Sc06g0006210 Simmondsia chinensis HOM05D003809 ORTHO05D003935 9.6e-07 58.2 44 56.8
A03p00380 Brassica napus HOM05D003809 ORTHO05D003935 1.3e-06 57.8 44 52.3
C03p00540 Brassica napus HOM05D003809 ORTHO05D003935 1.3e-06 57.8 44 52.3
BolC3t12620H Brassica oleracea HOM05D003809 ORTHO05D003935 1.3e-06 57.8 44 52.3
PGR004G0704 Punica granatum HOM05D003809 ORTHO05D003935 1.3e-06 57.8 41 61.0
Sp6g40590 Schrenkiella parvula HOM05D003809 ORTHO05D003935 1.3e-06 57.8 196 30.6
SMO118G0122 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 1.3e-06 57.8 46 43.5
Zm00001eb367050 Zea mays HOM05D003809 ORTHO05D003935 1.3e-06 57.8 45 53.3


User provided reference genes

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