Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 7.0e-184 647.1 323 100.0
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 6.9e-155 550.8 320 85.3
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 9.9e-154 547.0 321 84.1
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 9.3e-144 513.8 320 79.1
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 2.1e-140 502.7 320 77.5
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 5.5e-136 488.0 320 75.3
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 1.5e-133 479.9 321 72.9
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 1.9e-133 479.6 320 73.8
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 3.3e-133 478.8 320 72.5
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 9.6e-133 477.2 319 72.1
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 2.1e-132 476.1 321 72.6
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 2.4e-131 472.6 321 73.8
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 9.0e-131 470.7 319 73.4
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 2.0e-130 469.5 322 73.6
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 2.6e-130 469.2 319 72.4
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 3.4e-130 468.8 320 71.6
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 3.8e-129 465.3 319 71.8
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 5.0e-129 464.9 320 73.4
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 8.5e-129 464.2 321 70.7
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 1.9e-128 463.0 319 71.8
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 1.9e-128 463.0 321 71.0
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 3.2e-128 462.2 362 64.9
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 3.2e-128 462.2 326 71.5
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 9.3e-128 460.7 320 71.6
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 9.3e-128 460.7 324 70.7
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.2e-127 460.3 310 72.3
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 2.1e-127 459.5 320 70.6
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 2.7e-127 459.1 317 71.3
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 3.6e-127 458.8 320 70.3
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 3.6e-127 458.8 320 70.3
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 4.6e-127 458.4 320 72.8
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 1.0e-126 457.2 321 69.8
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 1.3e-126 456.8 305 73.1
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 1.8e-126 456.4 321 70.4
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 1.8e-126 456.4 319 69.9
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 8.7e-126 454.1 325 71.7
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 1.1e-125 453.8 320 70.6
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 1.5e-125 453.4 297 74.7
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 4.3e-125 451.8 320 69.4
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 9.7e-125 450.7 306 72.2
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 1.3e-124 450.3 315 71.7
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 3.1e-123 445.7 318 68.9
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 1.2e-122 443.7 310 71.0
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 1.5e-122 443.4 306 72.2
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 4.5e-122 441.8 321 69.2
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 4.5e-122 441.8 319 68.7
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 1.3e-121 440.3 319 69.0
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 5.0e-121 438.3 321 70.4
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 1.9e-120 436.4 320 70.3
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 2.5e-120 436.0 338 66.6
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 9.4e-120 434.1 322 68.0
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 1.6e-119 433.3 320 68.1
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 2.1e-119 433.0 323 68.7
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.4e-118 430.3 320 69.4
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 1.4e-118 430.3 315 70.2
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 8.8e-118 427.6 317 66.2
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 2.0e-117 426.4 333 65.2
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 9.7e-117 424.1 322 68.0
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 1.3e-116 423.7 321 68.2
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 4.8e-116 421.8 324 64.5
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 1.8e-115 419.9 320 66.9
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 1.2e-114 417.2 319 67.1
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 2.6e-114 416.0 298 69.5
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 3.8e-113 412.1 292 69.5
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 2.5e-112 409.5 297 70.4
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 7.2e-112 407.9 320 66.9
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 1.2e-111 407.1 304 66.4
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 2.1e-111 406.4 320 67.8
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 4.7e-111 405.2 305 67.9
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 6.1e-111 404.8 304 68.1
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.8e-110 403.3 319 66.5
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 2.3e-110 402.9 326 63.2
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 3.9e-110 402.1 294 68.4
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 1.5e-109 400.2 319 63.9
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.7e-108 396.7 217 90.3
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 4.8e-108 395.2 296 68.9
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 1.8e-107 393.3 296 66.2
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 3.1e-107 392.5 293 66.9
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 4.1e-107 392.1 293 66.2
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 7.0e-107 391.3 293 66.6
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 9.1e-107 391.0 296 66.6
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 2.6e-106 389.4 293 66.2
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 1.7e-105 386.7 296 65.5
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 3.8e-105 385.6 310 64.8
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 3.2e-104 382.5 310 62.9
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 4.2e-104 382.1 294 63.9
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.6e-103 380.2 287 67.6
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.0e-102 377.5 281 67.6
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 4.0e-102 375.6 321 61.7
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 4.0e-102 375.6 270 69.3
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 5.2e-102 375.2 294 65.0
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 1.5e-101 373.6 325 61.2
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 7.5e-101 371.3 296 63.9
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 1.7e-100 370.2 350 58.0
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 4.1e-99 365.5 316 59.8
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 2.7e-98 362.8 316 59.5
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 3.5e-98 362.5 299 60.5
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.3e-97 360.5 354 57.9
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 3.8e-97 359.0 339 56.3
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 1.0e-94 350.9 322 58.4
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 1.7e-92 343.6 340 53.2
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 2.4e-91 339.7 219 78.5
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 5.9e-90 335.1 220 75.9
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 1.8e-86 323.6 244 66.4
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 2.8e-79 299.7 195 77.4
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 7.0e-75 285.0 319 48.9
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 6.6e-73 278.5 224 66.1
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 5.8e-69 265.4 297 49.8
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 6.0e-66 255.4 223 60.5
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 1.9e-64 250.4 339 46.3
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 8.9e-62 241.5 152 75.0
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 4.3e-56 222.6 356 41.3
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 4.1e-51 206.1 203 57.6
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 1.3e-39 167.9 119 69.7
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 1.6e-39 167.5 91 87.9
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 6.2e-39 165.6 90 87.8
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 9.9e-29 131.7 79 77.2
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 9.9e-29 131.7 79 77.2
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 6.4e-28 129.0 172 47.7
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 1.6e-26 124.4 297 31.6
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 1.5e-24 117.9 343 25.7
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 1.8e-22 110.9 84 67.9
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 4.0e-22 109.8 84 66.7
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 4.0e-22 109.8 84 66.7
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 5.3e-22 109.4 354 26.8
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 2.0e-21 107.5 78 70.5
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 1.1e-19 101.7 68 70.6
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 7.1e-19 99.0 86 61.6
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 1.3e-15 88.2 103 48.5
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 5.3e-14 82.8 52 71.2
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 9.0e-14 82.0 44 86.4
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 5.1e-09 66.2 64 51.6
TPR.G25462 Trifolium pratense HOM05D000254 ORTHO05D000165 6.9e-06 55.8 44 59.1
PRCOL_00002868 Prasinoderma coloniale HOM05D004630 ORTHO05D005727 9.1e-06 55.5 85 36.5


User provided reference genes

Program Settings