Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0095500 Rhododendron simsii HOM05D003084 ORTHO05D003580 1.0e-105 386.7 197 100.0
Rhsim04G0090100 Rhododendron simsii HOM05D003084 ORTHO05D003580 2.5e-99 365.5 198 94.9
Rhsim04G0092700 Rhododendron simsii HOM05D003084 ORTHO05D003580 6.4e-63 244.6 196 72.4
RhsimUnG0029100 Rhododendron simsii HOM05D003084 ORTHO05D003580 7.9e-53 211.1 177 71.2
RhsimUnG0019800 Rhododendron simsii HOM05D003084 ORTHO05D003580 2.1e-45 186.4 180 63.9
vmacro07762 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 9.6e-43 177.6 181 60.8
Actinidia28117 Actinidia chinensis HOM05D003084 ORTHO05D003580 9.0e-41 171.0 180 58.3
Actinidia38769 Actinidia chinensis HOM05D003084 ORTHO05D003580 7.6e-40 167.9 180 56.7
CSS0001529 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 2.9e-39 166.0 180 56.7
Nn4g23295 Nelumbo nucifera HOM05D003084 ORTHO05D003580 2.9e-39 166.0 182 53.3
Dinv23897 Davidia involucrata HOM05D003084 ORTHO05D003580 3.2e-38 162.5 180 56.1
Dinv23905 Davidia involucrata HOM05D003084 ORTHO05D003580 3.2e-38 162.5 180 56.1
TAR629G3161 Trochodendron aralioides HOM05D003084 ORTHO05D003580 9.3e-38 161.0 182 52.7
Lj3P547T47 Lonicera japonica HOM05D003084 ORTHO05D003580 2.1e-37 159.8 181 54.7
TAR636G3251 Trochodendron aralioides HOM05D003084 ORTHO05D003580 2.7e-37 159.5 182 52.7
CSS0033238 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 1.0e-36 157.5 184 52.7
Lj3P537T27 Lonicera japonica HOM05D003084 ORTHO05D003580 1.3e-36 157.1 183 53.6
PGR142G4455 Punica granatum HOM05D003084 ORTHO05D003580 2.5e-35 152.9 180 55.0
MBI04_g36083_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 4.3e-35 152.1 190 50.0
Eucgr.I02637 Eucalyptus grandis HOM05D003084 ORTHO05D003580 2.8e-34 149.4 183 50.8
MBI14_g36930_MAGBIO Magnolia biondii HOM05D003084 ORTHO05D003580 8.2e-34 147.9 182 49.5
Haze_17408 Corylus avellana HOM05D003084 ORTHO05D003580 3.1e-33 146.0 181 49.7
CDE02G2072 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 4.1e-33 145.6 180 49.4
Glyma.13G229200 Glycine max HOM05D003084 ORTHO05D003580 4.1e-33 145.6 180 50.0
Glyma.15G083300 Glycine max HOM05D003084 ORTHO05D003580 4.1e-33 145.6 180 50.0
Sc13g0006780 Simmondsia chinensis HOM05D003084 ORTHO05D003580 5.3e-33 145.2 180 52.2
Dinv04117 Davidia involucrata HOM05D003084 ORTHO05D003580 6.9e-33 144.8 195 46.2
VMungo0540G2012 Vigna mungo HOM05D003084 ORTHO05D003580 6.9e-33 144.8 180 49.4
CDE09G0434 Ceratophyllum demersum HOM05D003084 ORTHO05D003580 9.0e-33 144.4 179 49.2
Phvul.006G175600 Phaseolus vulgaris HOM05D003084 ORTHO05D003580 1.2e-32 144.1 180 48.9
SEGI_22402 Sequoiadendron giganteum HOM05D003084 ORTHO05D003580 1.2e-32 144.1 191 48.2
arahy.Tifrunner.gnm1.ann1.4W8ZMG Arachis hypogaea HOM05D003084 ORTHO05D003580 3.4e-32 142.5 180 50.0
arahy.Tifrunner.gnm1.ann1.PVIH4H Arachis hypogaea HOM05D003084 ORTHO05D003580 7.7e-32 141.4 180 48.9
AUR62004235 Chenopodium quinoa HOM05D003084 ORTHO05D003580 7.7e-32 141.4 180 50.6
AUR62013613 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.0e-31 141.0 180 50.6
GSVIVG01025852001 Vitis vinifera HOM05D003084 ORTHO05D003580 1.0e-31 141.0 165 52.1
EL10Ac1g00935 Beta vulgaris HOM05D003084 ORTHO05D003580 2.2e-31 139.8 180 48.3
CSS0000201 Camellia sinensis var. sinensis HOM05D003084 ORTHO05D003580 2.2e-31 139.8 159 53.5
Thecc.02G134200 Theobroma cacao HOM05D003084 ORTHO05D003580 2.2e-31 139.8 178 50.0
ClCG10G009340 Citrullus lanatus HOM05D003084 ORTHO05D003580 3.8e-31 139.0 177 49.2
arahy.Tifrunner.gnm1.ann1.6856EH Arachis hypogaea HOM05D003084 ORTHO05D003580 6.5e-31 138.3 182 50.0
Gohir.A12G015800 Gossypium hirsutum HOM05D003084 ORTHO05D003580 8.5e-31 137.9 178 50.0
COL.COLO4_32309 Corchorus olitorius HOM05D003084 ORTHO05D003580 1.1e-30 137.5 178 48.9
Duzib052G0048 Durio zibethinus HOM05D003084 ORTHO05D003580 1.1e-30 137.5 178 48.9
Haze_07018 Corylus avellana HOM05D003084 ORTHO05D003580 1.4e-30 137.1 189 47.1
Gohir.D12G016100 Gossypium hirsutum HOM05D003084 ORTHO05D003580 1.9e-30 136.7 178 49.4
CiPaw.16G001600 Carya illinoinensis HOM05D003084 ORTHO05D003580 4.2e-30 135.6 182 46.7
CiPaw.16G001700 Carya illinoinensis HOM05D003084 ORTHO05D003580 4.2e-30 135.6 182 46.7
Gorai.008G016300 Gossypium raimondii HOM05D003084 ORTHO05D003580 4.2e-30 135.6 178 48.9
Mapoly0134s0023 Marchantia polymorpha HOM05D003084 ORTHO05D003580 5.5e-30 135.2 178 48.9
RcHm_v2.0_Chr6g0275901 Rosa chinensis HOM05D003084 ORTHO05D003580 9.4e-30 134.4 178 46.1
DCAR_026599 Daucus carota HOM05D003084 ORTHO05D003580 2.1e-29 133.3 185 45.4
QL12p003834 Quercus lobata HOM05D003084 ORTHO05D003580 3.6e-29 132.5 179 48.6
SHI54885 Sapria himalayana HOM05D003084 ORTHO05D003580 1.4e-28 130.6 177 49.2
Hma1.2p1_0996F.1_g245870 Hydrangea macrophylla HOM05D003084 ORTHO05D003580 1.8e-28 130.2 185 47.6
Sed0019948 Sechium edule HOM05D003084 ORTHO05D003580 1.8e-28 130.2 171 48.5
Lalb_Chr15g0090381 Lupinus albus HOM05D003084 ORTHO05D003580 2.3e-28 129.8 183 45.4
Ciclev10010658m.g Citrus clementina HOM05D003084 ORTHO05D003580 8.8e-28 127.9 184 45.1
Manes.10G104400 Manihot esculenta HOM05D003084 ORTHO05D003580 8.8e-28 127.9 177 48.6
CANSAT01G3215 Cannabis sativa HOM05D003084 ORTHO05D003580 1.1e-27 127.5 182 44.0
TWI23G0442 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 1.5e-27 127.1 179 46.9
Ca_00144_v3 Cicer arietinum L. HOM05D003084 ORTHO05D003580 2.5e-27 126.3 180 44.4
Lsat_1_v5_gn_6_59920 Lactuca sativa HOM05D003084 ORTHO05D003580 2.5e-27 126.3 180 43.9
Prupe.8G065000 Prunus persica HOM05D003084 ORTHO05D003580 2.5e-27 126.3 183 45.9
vmacro02485 Vaccinium macrocarpon HOM05D003084 ORTHO05D003580 2.5e-27 126.3 166 49.4
Aqoxy2G00351 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 3.3e-27 125.9 182 47.3
FvH4_2g14010 Fragaria vesca HOM05D003084 ORTHO05D003580 4.3e-27 125.6 179 44.1
FAN24G1613 Fragaria x ananassa HOM05D003084 ORTHO05D003580 9.7e-27 124.4 179 43.6
MD17G1162000 Malus domestica HOM05D003084 ORTHO05D003580 9.7e-27 124.4 188 44.1
MD17G1162100 Malus domestica HOM05D003084 ORTHO05D003580 9.7e-27 124.4 188 44.1
Lj6g0000948 Lotus japonicus HOM05D003084 ORTHO05D003580 1.7e-26 123.6 168 45.2
TWI59G0520 Tripterygium wilfordii HOM05D003084 ORTHO05D003580 1.7e-26 123.6 179 45.8
CsaV3_4G009520 Cucumis sativus L. HOM05D003084 ORTHO05D003580 2.8e-26 122.9 171 46.2
HanXRQChr02g0058761 Helianthus annuus HOM05D003084 ORTHO05D003580 2.8e-26 122.9 183 43.2
Lalb_Chr18g0060491 Lupinus albus HOM05D003084 ORTHO05D003580 2.8e-26 122.9 181 43.6
Sabra17G0037200 Salix brachista HOM05D003084 ORTHO05D003580 2.8e-26 122.9 180 45.0
Sabra17G0042500 Salix brachista HOM05D003084 ORTHO05D003580 2.8e-26 122.9 180 45.0
THA.LOC104799861 Tarenaya hassleriana HOM05D003084 ORTHO05D003580 2.8e-26 122.9 181 44.8
MELO3C024822.2 Cucumis melo HOM05D003084 ORTHO05D003580 3.7e-26 122.5 171 46.2
FAN27G2201 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.7e-26 122.5 179 43.0
Potri.017G050800 Populus trichocarpa HOM05D003084 ORTHO05D003580 3.7e-26 122.5 177 45.8
FAN20G2309 Fragaria x ananassa HOM05D003084 ORTHO05D003580 8.2e-26 121.3 179 43.0
Ah.05g172970 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.8e-25 120.2 178 45.5
Ah.05g175190 Amaranthus hybridus HOM05D003084 ORTHO05D003580 1.8e-25 120.2 178 45.5
FAN15G1682 Fragaria x ananassa HOM05D003084 ORTHO05D003580 3.1e-25 119.4 179 42.5
AagrBONN_evm.TU.Sc2ySwM_362.2841 Anthoceros agrestis HOM05D003084 ORTHO05D003580 1.2e-24 117.5 179 45.8
Psat4g019320 Pisum sativum HOM05D003084 ORTHO05D003580 2.6e-24 116.3 180 44.4
BcaB04g19962 Brassica carinata HOM05D003084 ORTHO05D003580 5.9e-24 115.2 180 42.2
AT5G64270 Arabidopsis thaliana HOM05D003084 ORTHO05D003580 1.0e-23 114.4 181 45.3
C09p09710 Brassica napus HOM05D003084 ORTHO05D003580 1.0e-23 114.4 180 43.3
BraA09t36508Z Brassica rapa HOM05D003084 ORTHO05D003580 1.0e-23 114.4 180 43.3
Sp2g27330 Schrenkiella parvula HOM05D003084 ORTHO05D003580 1.3e-23 114.0 181 45.3
BolC9t53882H Brassica oleracea HOM05D003084 ORTHO05D003580 1.7e-23 113.6 180 43.3
A09p08590 Brassica napus HOM05D003084 ORTHO05D003580 5.0e-23 112.1 180 41.7
AL8G41630 Arabidopsis lyrata HOM05D003084 ORTHO05D003580 8.5e-23 111.3 180 43.3
PSO063G3636 Papaver somniferum HOM05D003084 ORTHO05D003580 2.5e-22 109.8 180 38.9
Potri.001G310900 Populus trichocarpa HOM05D003084 ORTHO05D003580 3.2e-22 109.4 165 46.1
Sabra16G0196500 Salix brachista HOM05D003084 ORTHO05D003580 5.5e-22 108.6 168 45.2
ECA233G4363 Erigeron canadensis HOM05D003084 ORTHO05D003580 7.2e-22 108.2 181 42.0
PSO832G0894 Papaver somniferum HOM05D003084 ORTHO05D003580 7.2e-22 108.2 189 39.2
Cc02_g31230 Coffea canephora HOM05D003084 ORTHO05D003580 1.2e-21 107.5 180 43.3
Cc09_g09140 Coffea canephora HOM05D003084 ORTHO05D003580 1.2e-21 107.5 180 43.3
Aa31LG1G17630 Aethionema arabicum HOM05D003084 ORTHO05D003580 6.1e-21 105.1 180 41.1
Thhalv10005618m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 7.9e-21 104.8 180 40.6
Actinidia38788 Actinidia chinensis HOM05D003084 ORTHO05D003580 1.0e-20 104.4 180 39.4
Carub.0008s2506 Capsella rubella HOM05D003084 ORTHO05D003580 1.0e-20 104.4 183 41.0
CAN.G128.100 Capsicum annuum HOM05D003084 ORTHO05D003580 1.4e-20 104.0 193 38.9
BolC3t18459H Brassica oleracea HOM05D003084 ORTHO05D003580 2.3e-20 103.2 185 41.1
Peaxi162Scf00153g00138 Petunia axillaris HOM05D003084 ORTHO05D003580 2.3e-20 103.2 174 41.4
C03p62010 Brassica napus HOM05D003084 ORTHO05D003580 3.0e-20 102.8 183 41.5
Pp3c11_14450 Physcomitrium patens HOM05D003084 ORTHO05D003580 3.9e-20 102.4 168 41.1
PGSC0003DMG400028106 Solanum tuberosum HOM05D003084 ORTHO05D003580 3.9e-20 102.4 182 39.0
CBR_g21841 Chara braunii HOM05D003084 ORTHO05D003580 5.1e-20 102.1 179 41.3
CBR_g38933 Chara braunii HOM05D003084 ORTHO05D003580 6.7e-20 101.7 179 40.2
arahy.Tifrunner.gnm1.ann1.8HD4Y1 Arachis hypogaea HOM05D003084 ORTHO05D003580 8.8e-20 101.3 88 62.5
Nitab4.5_0003286g0010 Nicotiana tabacum HOM05D003084 ORTHO05D003580 1.1e-19 100.9 177 39.0
Sopen10g031590 Solanum pennellii HOM05D003084 ORTHO05D003580 1.1e-19 100.9 182 38.5
CARHR278180 Cardamine hirsuta HOM05D003084 ORTHO05D003580 1.5e-19 100.5 180 42.2
Nitab4.5_0000062g0290 Nicotiana tabacum HOM05D003084 ORTHO05D003580 2.6e-19 99.8 177 38.4
A06p30960 Brassica napus HOM05D003084 ORTHO05D003580 9.7e-19 97.8 184 43.5
FvH4_4g00110 Fragaria vesca HOM05D003084 ORTHO05D003580 9.7e-19 97.8 145 41.4
BraA06t26038Z Brassica rapa HOM05D003084 ORTHO05D003580 2.2e-18 96.7 184 42.9
HanXRQChr07g0185681 Helianthus annuus HOM05D003084 ORTHO05D003580 2.2e-18 96.7 193 37.3
SMO134G0059 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 2.8e-18 96.3 183 38.8
Aqoxy3G02504 Aquilegia oxysepala HOM05D003084 ORTHO05D003580 3.7e-18 95.9 185 38.9
Os02g0147300 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 8.2e-18 94.7 203 35.0
SGA_v2.0_scaffold106G30555 Striga asiatica HOM05D003084 ORTHO05D003580 1.1e-17 94.4 172 37.2
Os02g0146400 Oryza sativa ssp. japonica HOM05D003084 ORTHO05D003580 1.8e-17 93.6 195 35.4
Migut.J01608 Erythranthe guttata HOM05D003084 ORTHO05D003580 2.4e-17 93.2 181 37.0
COL.COLO4_32308 Corchorus olitorius HOM05D003084 ORTHO05D003580 7.0e-17 91.7 178 38.8
MSTRG.6294 Avicennia marina HOM05D003084 ORTHO05D003580 3.5e-16 89.4 177 35.0
Zm00001eb232170 Zea mays HOM05D003084 ORTHO05D003580 1.3e-15 87.4 192 36.5
Sc25g0002420 Simmondsia chinensis HOM05D003084 ORTHO05D003580 3.8e-15 85.9 162 39.5
Psat1g216360 Pisum sativum HOM05D003084 ORTHO05D003580 5.0e-15 85.5 202 33.2
Zm00001eb208060 Zea mays HOM05D003084 ORTHO05D003580 5.5e-14 82.0 184 34.8
Oeu060755.1 Olea europaea HOM05D003084 ORTHO05D003580 1.2e-13 80.9 170 36.5
Medtr2g009110 Medicago truncatula HOM05D003084 ORTHO05D003580 8.0e-13 78.2 181 36.5
HPP92_010381 Vanilla planifolia HOM05D003084 ORTHO05D003580 1.0e-12 77.8 177 34.5
AUR62032335 Chenopodium quinoa HOM05D003084 ORTHO05D003580 1.1e-11 74.3 121 44.6
Oeu052036.1 Olea europaea HOM05D003084 ORTHO05D003580 2.6e-11 73.2 93 44.1
unitig_744.g24164 Utricularia gibba HOM05D003084 ORTHO05D003580 7.4e-11 71.6 83 44.6
Thhalv10024248m.g Eutrema salsugineum HOM05D003084 ORTHO05D003580 4.8e-10 68.9 183 35.0
Pp3c7_19180 Physcomitrium patens HOM05D003084 ORTHO05D003580 1.0e-07 61.2 103 38.8
SMO361G0072 Selaginella moellendorffii HOM05D003084 ORTHO05D003580 2.5e-06 56.6 168 29.8


User provided reference genes

Program Settings