Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0043300 Rhododendron simsii HOM05D001529 ORTHO05D024706 3.6e-82 308.1 151 100.0
Rhsim04G0043200 Rhododendron simsii HOM05D001529 ORTHO05D007595 7.6e-40 167.5 87 97.7
vmacro09386 Vaccinium macrocarpon HOM05D001529 ORTHO05D007595 8.7e-36 154.1 87 89.7
CSS0013229 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 1.5e-32 143.3 85 82.4
CSS0024750 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D024706 1.5e-32 143.3 85 82.4
Sabra14G0123900 Salix brachista HOM05D001529 ORTHO05D007595 7.7e-32 141.0 87 80.5
DCAR_021112 Daucus carota HOM05D001529 ORTHO05D007595 2.2e-31 139.4 87 79.3
Potri.014G162200 Populus trichocarpa HOM05D001529 ORTHO05D007595 2.2e-31 139.4 87 79.3
TAR626G0907 Trochodendron aralioides HOM05D001529 ORTHO05D007595 2.2e-31 139.4 85 78.8
HanXRQChr10g0306381 Helianthus annuus HOM05D001529 ORTHO05D007595 2.9e-31 139.0 87 78.2
Actinidia21451 Actinidia chinensis HOM05D001529 ORTHO05D007595 6.5e-31 137.9 89 77.5
Nitab4.5_0004215g0030 Nicotiana tabacum HOM05D001529 ORTHO05D007595 6.5e-31 137.9 86 81.4
Duzib138G1061 Durio zibethinus HOM05D001529 ORTHO05D007595 8.5e-31 137.5 87 79.3
ECA234G3620 Erigeron canadensis HOM05D001529 ORTHO05D007595 1.9e-30 136.3 87 77.0
Hma1.2p1_0405F.1_g145710 Hydrangea macrophylla HOM05D001529 ORTHO05D007595 1.9e-30 136.3 87 79.3
Hma1.2p1_0405F.1_g145720 Hydrangea macrophylla HOM05D001529 ORTHO05D007595 1.9e-30 136.3 87 79.3
GSVIVG01030033001 Vitis vinifera HOM05D001529 ORTHO05D007595 1.9e-30 136.3 85 77.6
Solyc07g048080.4 Solanum lycopersicum HOM05D001529 ORTHO05D007595 2.5e-30 136.0 86 77.9
Sopen07g024500 Solanum pennellii HOM05D001529 ORTHO05D007595 2.5e-30 136.0 86 77.9
Aqoxy4G02192 Aquilegia oxysepala HOM05D001529 ORTHO05D007595 3.2e-30 135.6 87 78.2
Sed0023062 Sechium edule HOM05D001529 ORTHO05D007595 3.2e-30 135.6 87 77.0
Lj1C790T8 Lonicera japonica HOM05D001529 ORTHO05D007595 4.2e-30 135.2 87 78.2
Medtr3g083180 Medicago truncatula HOM05D001529 ORTHO05D007595 4.2e-30 135.2 89 75.3
Psat5g104480 Pisum sativum HOM05D001529 ORTHO05D007595 7.2e-30 134.4 89 75.3
TPR.G19324 Trifolium pratense HOM05D001529 ORTHO05D007595 7.2e-30 134.4 89 74.2
Nn1g03283 Nelumbo nucifera HOM05D001529 ORTHO05D007595 9.4e-30 134.0 85 77.6
Lsat_1_v5_gn_5_123180 Lactuca sativa HOM05D001529 ORTHO05D007595 1.6e-29 133.3 87 75.9
QL93p0116_0063 Quercus lobata HOM05D001529 ORTHO05D007595 2.1e-29 132.9 85 77.6
TWI36G1606 Tripterygium wilfordii HOM05D001529 ORTHO05D007595 2.1e-29 132.9 87 75.9
CiPaw.03G277800 Carya illinoinensis HOM05D001529 ORTHO05D007595 2.7e-29 132.5 85 76.5
CsaV3_7G002750 Cucumis sativus L. HOM05D001529 ORTHO05D007595 3.6e-29 132.1 86 75.6
Haze_12706 Corylus avellana HOM05D001529 ORTHO05D007595 4.6e-29 131.7 84 77.4
Eucgr.A01064 Eucalyptus grandis HOM05D001529 ORTHO05D007595 6.1e-29 131.3 85 78.8
Eucgr.A01066 Eucalyptus grandis HOM05D001529 ORTHO05D007595 6.1e-29 131.3 85 78.8
Thecc.01G188800 Theobroma cacao HOM05D001529 ORTHO05D007595 6.1e-29 131.3 87 74.7
MBI19_g06153_MAGBIO Magnolia biondii HOM05D001529 ORTHO05D007595 7.9e-29 131.0 85 75.3
MD09G1120400 Malus domestica HOM05D001529 ORTHO05D007595 7.9e-29 131.0 87 72.4
PGR042G1774 Punica granatum HOM05D001529 ORTHO05D007595 1.0e-28 130.6 85 74.1
Lalb_Chr14g0362561 Lupinus albus HOM05D001529 ORTHO05D007595 1.4e-28 130.2 89 73.0
Sc20g0003910 Simmondsia chinensis HOM05D001529 ORTHO05D007595 1.4e-28 130.2 85 75.3
Thhalv10002438m.g Eutrema salsugineum HOM05D001529 ORTHO05D007595 1.8e-28 129.8 87 74.7
Aa31sc53G50 Aethionema arabicum HOM05D001529 ORTHO05D007595 2.3e-28 129.4 87 71.3
Manes.12G062800 Manihot esculenta HOM05D001529 ORTHO05D007595 2.3e-28 129.4 87 70.1
Sp3g23420 Schrenkiella parvula HOM05D001529 ORTHO05D007595 2.3e-28 129.4 87 73.6
Hund24142 Selenicereus undatus HOM05D001529 ORTHO05D007595 2.3e-28 129.4 85 72.9
Ciclev10018290m.g Citrus clementina HOM05D001529 ORTHO05D007595 3.0e-28 129.0 87 72.4
CAN.G897.4 Capsicum annuum HOM05D001529 ORTHO05D007595 3.9e-28 128.6 86 76.7
ClCG02G002590 Citrullus lanatus HOM05D001529 ORTHO05D007595 3.9e-28 128.6 86 75.6
Phvul.009G238000 Phaseolus vulgaris HOM05D001529 ORTHO05D007595 3.9e-28 128.6 89 74.2
BcaB08g34492 Brassica carinata HOM05D001529 ORTHO05D007595 5.1e-28 128.3 87 72.4
A03p44470 Brassica napus HOM05D001529 ORTHO05D007595 5.1e-28 128.3 87 73.6
C03p55280 Brassica napus HOM05D001529 ORTHO05D007595 5.1e-28 128.3 87 73.6
BolC3t17800H Brassica oleracea HOM05D001529 ORTHO05D007595 5.1e-28 128.3 87 73.6
BraA03t13580Z Brassica rapa HOM05D001529 ORTHO05D007595 5.1e-28 128.3 87 73.6
Cc00_g04140 Coffea canephora HOM05D001529 ORTHO05D007595 5.1e-28 128.3 86 73.3
AL3G42430 Arabidopsis lyrata HOM05D001529 ORTHO05D007595 1.1e-27 127.1 87 72.4
Carub.0003s2643 Capsella rubella HOM05D001529 ORTHO05D007595 1.1e-27 127.1 87 72.4
Prupe.3G203100 Prunus persica HOM05D001529 ORTHO05D007595 1.5e-27 126.7 87 71.3
Migut.H01288 Erythranthe guttata HOM05D001529 ORTHO05D007595 2.0e-27 126.3 87 71.3
VMungo1080G0307 Vigna mungo HOM05D001529 ORTHO05D007595 2.0e-27 126.3 89 73.0
EL10Ac4g09205 Beta vulgaris HOM05D001529 ORTHO05D007595 4.4e-27 125.2 87 69.0
Lj6g0006977 Lotus japonicus HOM05D001529 ORTHO05D007595 4.4e-27 125.2 89 70.8
AT2G04842 Arabidopsis thaliana HOM05D001529 ORTHO05D007595 5.7e-27 124.8 87 71.3
Gorai.001G193700 Gossypium raimondii HOM05D001529 ORTHO05D007595 7.4e-27 124.4 84 72.6
PGSC0003DMG400006139 Solanum tuberosum HOM05D001529 ORTHO05D007595 9.7e-27 124.0 75 81.3
MSTRG.12244 Avicennia marina HOM05D001529 ORTHO05D007595 1.3e-26 123.6 95 68.4
CDE07G0378 Ceratophyllum demersum HOM05D001529 ORTHO05D024706 1.3e-26 123.6 85 72.9
AUR62000956 Chenopodium quinoa HOM05D001529 ORTHO05D007595 1.7e-26 123.2 85 71.8
Glyma.19G191200 Glycine max HOM05D001529 ORTHO05D007595 1.7e-26 123.2 89 70.8
THA.LOC104826614 Tarenaya hassleriana HOM05D001529 ORTHO05D007595 1.7e-26 123.2 87 69.0
unitig_62.g23257 Utricularia gibba HOM05D001529 ORTHO05D007595 1.7e-26 123.2 89 69.7
Cpa.g.sc136.10 Carica papaya HOM05D001529 ORTHO05D007595 2.8e-26 122.5 82 72.0
AUR62005012 Chenopodium quinoa HOM05D001529 ORTHO05D007595 2.8e-26 122.5 85 70.6
Gohir.A07G167800 Gossypium hirsutum HOM05D001529 ORTHO05D007595 2.8e-26 122.5 84 71.4
Gohir.D07G173400 Gossypium hirsutum HOM05D001529 ORTHO05D007595 2.8e-26 122.5 83 72.3
CARHR102830 Cardamine hirsuta HOM05D001529 ORTHO05D007595 3.7e-26 122.1 86 69.8
Oeu064362.2 Olea europaea HOM05D001529 ORTHO05D007595 3.7e-26 122.1 84 72.6
THA.LOC104815352 Tarenaya hassleriana HOM05D001529 ORTHO05D007595 3.7e-26 122.1 87 69.0
Ah.06g192740 Amaranthus hybridus HOM05D001529 ORTHO05D007595 6.3e-26 121.3 85 68.2
CANSAT64G0296 Cannabis sativa HOM05D001529 ORTHO05D007595 8.2e-26 120.9 85 67.1
PSO675G8054 Papaver somniferum HOM05D001529 ORTHO05D007595 6.9e-25 117.9 73 76.7
RcHm_v2.0_Chr2g0156891 Rosa chinensis HOM05D001529 ORTHO05D007595 9.1e-25 117.5 85 69.4
FAN02G4258 Fragaria x ananassa HOM05D001529 ORTHO05D007595 1.2e-24 117.1 85 68.2
FAN09G3924 Fragaria x ananassa HOM05D001529 ORTHO05D024706 1.2e-24 117.1 85 68.2
FAN14G1621 Fragaria x ananassa HOM05D001529 ORTHO05D007595 1.2e-24 117.1 85 69.4
FvH4_6g41340 Fragaria vesca HOM05D001529 ORTHO05D007595 1.5e-24 116.7 85 68.2
PSO541G2760 Papaver somniferum HOM05D001529 ORTHO05D007595 1.5e-24 116.7 73 75.3
Zm00001eb325920 Zea mays HOM05D001529 ORTHO05D007595 1.5e-24 116.7 87 63.2
arahy.Tifrunner.gnm1.ann1.6FNM9R Arachis hypogaea HOM05D001529 ORTHO05D007595 5.9e-24 114.8 88 63.6
arahy.Tifrunner.gnm1.ann1.9BA4YH Arachis hypogaea HOM05D001529 ORTHO05D007595 5.9e-24 114.8 88 63.6
arahy.Tifrunner.gnm1.ann1.TVN328 Arachis hypogaea HOM05D001529 ORTHO05D007595 5.9e-24 114.8 86 65.1
ATR0712G164 Amborella trichopoda HOM05D001529 ORTHO05D007595 1.0e-23 114.0 89 62.9
HPP92_022799 Vanilla planifolia HOM05D001529 ORTHO05D007595 1.0e-23 114.0 85 65.9
FAN05G0710 Fragaria x ananassa HOM05D001529 ORTHO05D007595 1.3e-23 113.6 85 67.1
Os02g0538000 Oryza sativa ssp. japonica HOM05D001529 ORTHO05D007595 1.7e-23 113.2 85 61.2
COL.COLO4_10294 Corchorus olitorius HOM05D001529 ORTHO05D024706 1.9e-22 109.8 88 64.8
SGA_v2.0_scaffold49G18408 Striga asiatica HOM05D001529 ORTHO05D007595 5.5e-22 108.2 67 77.6
Pp3c14_20630 Physcomitrium patens HOM05D001529 ORTHO05D007595 2.0e-19 99.8 71 67.6
Mapoly0096s0034 Marchantia polymorpha HOM05D001529 ORTHO05D007595 3.3e-19 99.0 81 60.5
Dinv07847 Davidia involucrata HOM05D001529 ORTHO05D007595 4.4e-19 98.6 56 87.5
Pp3c2_11130 Physcomitrium patens HOM05D001529 ORTHO05D007595 9.7e-19 97.4 83 59.0
SMO145G0032 Selaginella moellendorffii HOM05D001529 ORTHO05D007595 1.3e-18 97.1 71 64.8
SEGI_09505 Sequoiadendron giganteum HOM05D001529 ORTHO05D007595 3.1e-17 92.4 85 54.1
CBR_g3851 Chara braunii HOM05D001529 ORTHO05D007595 9.1e-17 90.9 73 60.3
Peaxi162Scf02035g00017 Petunia axillaris HOM05D001529 ORTHO05D007595 4.5e-16 88.6 50 86.0
CDE04G2767 Ceratophyllum demersum HOM05D001529 ORTHO05D007595 1.2e-13 80.5 52 71.2
MD17G1111100 Malus domestica HOM05D001529 ORTHO05D007595 8.8e-12 74.3 54 70.4
PRCOL_00005026 Prasinoderma coloniale HOM05D001529 ORTHO05D007595 1.2e-11 73.9 77 46.8
MCO11G246 Micromonas commoda HOM05D001529 ORTHO05D007595 2.0e-11 73.2 72 48.6
CSS0037422 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 9.7e-11 70.9 73 57.5
CSS0041772 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 9.7e-11 70.9 73 57.5
Cre10.g421600 Chlamydomonas reinhardtii HOM05D001529 ORTHO05D007595 1.0e-07 60.8 72 41.7


User provided reference genes

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