Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 1.5e-49 199.1 95 100.0
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 5.5e-12 74.3 35 91.4
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 7.2e-12 73.9 42 73.8
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 9.5e-12 73.6 42 78.6
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 9.5e-12 73.6 43 76.7
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.6e-11 72.8 36 86.1
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.6e-11 72.8 36 86.1
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.6e-11 72.8 36 86.1
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 1.6e-11 72.8 36 86.1
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.6e-11 72.8 38 81.6
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 2.1e-11 72.4 35 88.6
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 2.1e-11 72.4 35 88.6
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 2.1e-11 72.4 35 88.6
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 2.1e-11 72.4 35 88.6
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 2.1e-11 72.4 35 88.6
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 2.1e-11 72.4 35 88.6
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 2.1e-11 72.4 35 88.6
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 2.1e-11 72.4 35 88.6
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 2.1e-11 72.4 47 74.5
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 2.1e-11 72.4 35 88.6
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 2.1e-11 72.4 34 91.2
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 2.1e-11 72.4 35 88.6
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 2.1e-11 72.4 35 88.6
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 2.8e-11 72.0 33 93.9
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 2.8e-11 72.0 33 93.9
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 2.8e-11 72.0 33 93.9
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 2.8e-11 72.0 33 93.9
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 2.8e-11 72.0 35 88.6
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 2.8e-11 72.0 33 93.9
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 2.8e-11 72.0 33 93.9
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 6.1e-11 70.9 33 90.9
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 6.1e-11 70.9 35 85.7
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 6.1e-11 70.9 44 72.7
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 8.0e-11 70.5 35 85.7
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 8.0e-11 70.5 35 88.6
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 8.0e-11 70.5 35 85.7
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 8.0e-11 70.5 35 85.7
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 8.0e-11 70.5 35 85.7
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 8.0e-11 70.5 35 85.7
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 8.0e-11 70.5 35 85.7
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 8.0e-11 70.5 35 85.7
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 8.0e-11 70.5 35 85.7
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 8.0e-11 70.5 35 85.7
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 8.0e-11 70.5 37 83.8
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 8.0e-11 70.5 35 85.7
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 8.0e-11 70.5 35 85.7
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 8.0e-11 70.5 35 85.7
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.0e-10 70.1 38 81.6
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.0e-10 70.1 38 81.6
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 1.0e-10 70.1 35 85.7
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 1.0e-10 70.1 33 90.9
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 1.0e-10 70.1 33 90.9
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 1.4e-10 69.7 35 88.6
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 1.4e-10 69.7 33 90.9
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 1.8e-10 69.3 34 88.2
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 82.9
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 82.9
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 82.9
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 82.9
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 82.9
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 82.9
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 1.8e-10 69.3 35 85.7
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 2.3e-10 68.9 33 90.9
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 2.3e-10 68.9 33 90.9
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 2.3e-10 68.9 33 90.9
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 2.3e-10 68.9 33 90.9
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 2.3e-10 68.9 35 85.7
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 2.3e-10 68.9 35 85.7
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 2.3e-10 68.9 35 85.7
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 2.3e-10 68.9 35 85.7
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 2.3e-10 68.9 35 85.7
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 2.3e-10 68.9 35 85.7
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 2.3e-10 68.9 35 85.7
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 2.3e-10 68.9 35 85.7
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 2.3e-10 68.9 35 85.7
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 2.3e-10 68.9 34 88.2
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 2.3e-10 68.9 35 82.9
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 2.3e-10 68.9 35 82.9
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 2.3e-10 68.9 35 85.7
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 3.0e-10 68.6 54 63.0
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 3.0e-10 68.6 46 67.4
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 4.0e-10 68.2 35 77.1
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 4.0e-10 68.2 35 77.1
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 4.0e-10 68.2 35 85.7
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 5.2e-10 67.8 35 77.1
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 6.8e-10 67.4 35 82.9
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 6.8e-10 67.4 34 85.3
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 6.8e-10 67.4 35 82.9
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 6.8e-10 67.4 35 82.9
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 6.8e-10 67.4 35 82.9
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 6.8e-10 67.4 35 82.9
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 6.8e-10 67.4 35 82.9
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 6.8e-10 67.4 35 82.9
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 6.8e-10 67.4 35 80.0
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 8.8e-10 67.0 33 87.9
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 8.8e-10 67.0 33 87.9
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 8.8e-10 67.0 38 78.9
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 8.8e-10 67.0 38 78.9
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 8.8e-10 67.0 35 82.9
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.2e-09 66.6 33 84.8
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 1.2e-09 66.6 33 87.9
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 1.2e-09 66.6 35 82.9
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.6e-09 65.5 38 76.3
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 2.6e-09 65.5 35 80.0
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 2.6e-09 65.5 35 82.9
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 3.4e-09 65.1 35 74.3
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 3.4e-09 65.1 35 80.0
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 3.4e-09 65.1 35 80.0
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 3.4e-09 65.1 35 80.0
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 4.4e-09 64.7 43 67.4
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 4.4e-09 64.7 35 80.0
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 4.4e-09 64.7 35 80.0
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 4.4e-09 64.7 35 80.0
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 4.4e-09 64.7 35 80.0
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 4.4e-09 64.7 29 93.1
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 7.5e-09 63.9 54 57.4
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 1.3e-08 63.2 34 82.4
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 1.3e-08 63.2 35 80.0
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 1.3e-08 63.2 35 74.3
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 1.7e-08 62.8 32 84.4
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 1.7e-08 62.8 33 84.8
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.2e-08 62.4 35 74.3
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 2.8e-08 62.0 35 77.1
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 2.8e-08 62.0 35 77.1
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 3.7e-08 61.6 30 90.0
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 3.7e-08 61.6 30 90.0
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 8.3e-08 60.5 32 75.0
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 8.3e-08 60.5 35 71.4
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 1.1e-07 60.1 35 74.3
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 3.1e-07 58.5 32 81.2
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 1.2e-06 56.6 35 65.7
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 1.6e-06 56.2 30 76.7
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 1.6e-06 56.2 38 60.5
arahy.Tifrunner.gnm1.ann1.H77AQF Arachis hypogaea HOM05D004494 ORTHO05D005493 3.5e-06 55.1 32 78.1
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 3.5e-06 55.1 49 57.1


User provided reference genes

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