Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim04G0022800 Rhododendron simsii HOM05D006724 ORTHO05D008514 8.5e-193 676.8 331 100.0
Actinidia18778 Actinidia chinensis HOM05D006724 ORTHO05D008514 5.4e-155 551.2 333 82.3
Dinv14945 Davidia involucrata HOM05D006724 ORTHO05D008514 3.9e-145 518.5 332 78.9
CSS0014927 Camellia sinensis var. sinensis HOM05D006724 ORTHO05D008514 1.2e-141 506.9 335 78.2
Hma1.2p1_0416F.1_g148420 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 1.7e-132 476.5 340 72.1
QL08p023685 Quercus lobata HOM05D006724 ORTHO05D008514 7.3e-128 461.1 341 70.7
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 3.6e-127 458.8 333 71.5
Cfa020617 Carpinus fangiana HOM05D006724 ORTHO05D008514 9.0e-126 454.1 324 70.4
GSVIVG01014275001 Vitis vinifera HOM05D006724 ORTHO05D008514 2.2e-124 449.5 263 79.8
vmacro09520 Vaccinium macrocarpon HOM05D006724 ORTHO05D008514 2.9e-124 449.1 301 76.1
CiPaw.11G166800 Carya illinoinensis HOM05D006724 ORTHO05D008514 4.2e-123 445.3 295 72.2
MD11G1255900 Malus domestica HOM05D006724 ORTHO05D008514 1.3e-121 440.3 336 65.8
Prupe.4G173900 Prunus persica HOM05D006724 ORTHO05D008514 1.7e-121 439.9 338 65.7
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 8.7e-121 437.6 332 68.4
arahy.Tifrunner.gnm1.ann1.WDE0T2 Arachis hypogaea HOM05D006724 ORTHO05D008514 2.5e-120 436.0 333 65.5
EL10Ac4g08255 Beta vulgaris HOM05D006724 ORTHO05D008514 4.3e-120 435.3 329 67.2
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 2.1e-119 433.0 331 67.1
Sopen07g030980 Solanum pennellii HOM05D006724 ORTHO05D008514 6.2e-119 431.4 325 66.2
PGSC0003DMG400012400 Solanum tuberosum HOM05D006724 ORTHO05D008514 8.1e-119 431.0 325 65.8
arahy.Tifrunner.gnm1.ann1.N2BE0G Arachis hypogaea HOM05D006724 ORTHO05D008514 1.8e-118 429.9 333 64.6
Nitab4.5_0000246g0080 Nicotiana tabacum HOM05D006724 ORTHO05D008514 9.0e-118 427.6 371 59.6
Solyc07g062750.4 Solanum lycopersicum HOM05D006724 ORTHO05D008514 2.6e-117 426.0 325 65.5
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 3.4e-117 425.6 325 68.0
FvH4_3g19250 Fragaria vesca HOM05D006724 ORTHO05D008514 7.6e-117 424.5 334 60.2
FAN11G3114 Fragaria x ananassa HOM05D006724 ORTHO05D008514 7.6e-117 424.5 334 60.2
RcHm_v2.0_Chr5g0032321 Rosa chinensis HOM05D006724 ORTHO05D008514 1.3e-116 423.7 334 62.0
Psat4g169400 Pisum sativum HOM05D006724 ORTHO05D008514 4.9e-116 421.8 330 66.7
CAN.G162.28 Capsicum annuum HOM05D006724 ORTHO05D008514 5.5e-115 418.3 328 63.7
Sc03g0010250 Simmondsia chinensis HOM05D006724 ORTHO05D008514 7.1e-115 417.9 336 64.3
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 9.3e-115 417.5 291 71.8
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 1.2e-114 417.2 333 63.1
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 3.5e-114 415.6 263 75.7
Cc05_g11660 Coffea canephora HOM05D006724 ORTHO05D008514 1.3e-113 413.7 278 69.8
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 1.8e-113 413.3 339 60.2
Duzib213G0893 Durio zibethinus HOM05D006724 ORTHO05D008514 8.7e-113 411.0 340 60.9
Glyma.06G234800 Glycine max HOM05D006724 ORTHO05D008514 8.7e-113 411.0 324 63.6
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 1.5e-112 410.2 330 60.9
FAN25G2812 Fragaria x ananassa HOM05D006724 ORTHO05D008514 9.6e-112 407.5 348 56.3
CANSAT35G1416 Cannabis sativa HOM05D006724 ORTHO05D008514 2.1e-111 406.4 284 67.6
Eucgr.F01176 Eucalyptus grandis HOM05D006724 ORTHO05D008514 2.8e-111 406.0 264 69.7
BraA05t22252Z Brassica rapa HOM05D006724 ORTHO05D008514 3.7e-111 405.6 329 60.8
HanXRQChr12g0364011 Helianthus annuus HOM05D006724 ORTHO05D008514 3.7e-111 405.6 334 63.5
Potri.011G141300 Populus trichocarpa HOM05D006724 ORTHO05D008514 4.8e-111 405.2 346 57.5
PSO832G3136 Papaver somniferum HOM05D006724 ORTHO05D008514 8.1e-111 404.4 293 66.2
A05p34310 Brassica napus HOM05D006724 ORTHO05D008514 1.8e-110 403.3 329 60.2
C05p52090 Brassica napus HOM05D006724 ORTHO05D008514 2.4e-110 402.9 329 59.6
BcaB06g29538 Brassica carinata HOM05D006724 ORTHO05D008514 3.1e-110 402.5 327 59.9
BolC5t33894H Brassica oleracea HOM05D006724 ORTHO05D008514 9.0e-110 401.0 329 59.3
FAN21G1177 Fragaria x ananassa HOM05D006724 ORTHO05D008514 3.4e-109 399.1 377 54.1
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 4.5e-109 398.7 316 61.7
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 1.7e-108 396.7 340 58.5
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 1.7e-108 396.7 309 62.8
Gorai.002G066900 Gossypium raimondii HOM05D006724 ORTHO05D008514 2.2e-108 396.4 336 58.0
CARHR090120 Cardamine hirsuta HOM05D006724 ORTHO05D008514 2.9e-108 396.0 336 57.4
PGR083G0421 Punica granatum HOM05D006724 ORTHO05D008514 4.9e-108 395.2 315 61.3
Nitab4.5_0000831g0090 Nicotiana tabacum HOM05D006724 ORTHO05D008514 8.4e-108 394.4 321 62.9
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 2.5e-107 392.9 271 67.2
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 3.2e-107 392.5 341 57.8
Ah.04g164500 Amaranthus hybridus HOM05D006724 ORTHO05D008514 9.3e-107 391.0 316 63.9
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 1.2e-106 390.6 328 61.6
Sabra11G0126900 Salix brachista HOM05D006724 ORTHO05D008514 1.6e-106 390.2 368 54.6
DCAR_017120 Daucus carota HOM05D006724 ORTHO05D008514 2.7e-106 389.4 338 63.0
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 4.6e-106 388.7 340 57.6
SGA_v2.0_scaffold34G13794 Striga asiatica HOM05D006724 ORTHO05D008514 6.0e-106 388.3 346 60.1
AUR62019487 Chenopodium quinoa HOM05D006724 ORTHO05D008514 1.3e-105 387.1 291 64.3
CsaV3_4G033360 Cucumis sativus L. HOM05D006724 ORTHO05D008514 8.7e-105 384.4 330 58.8
Aqoxy4G00591 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 1.1e-104 384.0 263 68.4
ClCG11G017740 Citrullus lanatus HOM05D006724 ORTHO05D008514 1.1e-104 384.0 331 58.3
Aqoxy4G00685 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 2.5e-104 382.9 263 68.1
Sed0012116 Sechium edule HOM05D006724 ORTHO05D008514 2.5e-104 382.9 292 61.6
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 3.3e-104 382.5 264 68.9
MSTRG.15243 Avicennia marina HOM05D006724 ORTHO05D008514 5.7e-104 381.7 330 61.2
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 1.3e-103 380.6 327 58.1
TWI32G0858 Tripterygium wilfordii HOM05D006724 ORTHO05D008514 1.6e-103 380.2 331 59.2
Lsat_1_v5_gn_9_98661 Lactuca sativa HOM05D006724 ORTHO05D008514 2.8e-103 379.4 344 61.6
MELO3C025618.2 Cucumis melo HOM05D006724 ORTHO05D008514 1.8e-102 376.7 332 57.5
Manes.03G104800 Manihot esculenta HOM05D006724 ORTHO05D008514 4.1e-102 375.6 277 64.3
Migut.M00774 Erythranthe guttata HOM05D006724 ORTHO05D008514 9.0e-102 374.4 345 58.3
Peaxi162Scf00069g01835 Petunia axillaris HOM05D006724 ORTHO05D008514 2.6e-101 372.9 259 69.5
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 5.9e-101 371.7 318 59.4
SalBow8G1625 Salvia bowleyana HOM05D006724 ORTHO05D008514 1.4e-99 367.1 307 60.6
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 5.1e-97 358.6 252 69.8
Atru.chr2.2388 Acer truncatum HOM05D006724 ORTHO05D008514 1.9e-96 356.7 252 68.3
HPP92_003898 Vanilla planifolia HOM05D006724 ORTHO05D008514 9.0e-94 347.8 309 55.7
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 5.9e-93 345.1 252 63.1
Gohir.D01G047400 Gossypium hirsutum HOM05D006724 ORTHO05D008514 1.9e-91 340.1 336 51.8
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 3.3e-88 329.3 284 54.9
Gohir.A01G060866 Gossypium hirsutum HOM05D006724 ORTHO05D008514 3.1e-86 322.8 228 66.2
Pp3c27_5050 Physcomitrium patens HOM05D006724 ORTHO05D008514 2.6e-85 319.7 265 56.2
Hma1.2p1_0416F.1_g148440 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 3.4e-85 319.3 186 80.1
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 1.3e-84 317.4 291 53.6
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 2.2e-84 316.6 252 59.5
Mapoly0005s0020 Marchantia polymorpha HOM05D006724 ORTHO05D008514 5.0e-84 315.5 265 57.4
DCAR_013127 Daucus carota HOM05D006724 ORTHO05D008514 1.1e-83 314.3 306 50.0
AUR62036149 Chenopodium quinoa HOM05D006724 ORTHO05D008514 4.7e-82 308.9 213 67.6
CBR_g4826 Chara braunii HOM05D000829 ORTHO05D008514 4.5e-77 292.4 270 51.5
SMO367G0863 Selaginella moellendorffii HOM05D006724 ORTHO05D008514 2.5e-75 286.6 269 53.2
FAN16G1823 Fragaria x ananassa HOM05D006724 ORTHO05D008514 1.6e-69 267.3 356 43.0
Gohir.A01G060932 Gossypium hirsutum HOM05D006724 ORTHO05D008514 5.5e-67 258.8 341 43.1
Ca_07350_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 4.4e-64 249.2 231 56.3
Nn1g04264 Nelumbo nucifera HOM05D006724 ORTHO05D008514 1.6e-53 214.2 143 71.3
unitig_86.g29838 Utricularia gibba HOM05D006724 ORTHO05D008514 4.5e-53 212.6 164 61.6
ATR0602G031 Amborella trichopoda HOM05D006724 ORTHO05D008514 6.6e-52 208.8 151 67.5
arahy.Tifrunner.gnm1.ann1.60K44K Arachis hypogaea HOM05D006724 ORTHO05D008514 2.5e-51 206.8 188 55.9
CDE08G0827 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 9.5e-51 204.9 157 60.5
Hund22831 Selenicereus undatus HOM05D006724 ORTHO05D008514 8.6e-44 181.8 112 71.4
Hund22832 Selenicereus undatus HOM05D006724 ORTHO05D008514 1.5e-43 181.0 135 66.7
Thhalv10021514m.g Eutrema salsugineum HOM05D006724 ORTHO05D008514 4.4e-40 169.5 338 34.6
TAR627G0912 Trochodendron aralioides HOM05D006724 ORTHO05D008514 3.0e-36 156.8 156 57.1
arahy.Tifrunner.gnm1.ann1.E3N302 Arachis hypogaea HOM05D006724 ORTHO05D008514 1.4e-33 147.9 163 48.5
Oeu019299.2 Olea europaea HOM05D006724 ORTHO05D008514 2.6e-32 143.7 153 55.6
Hma1.2p1_0416F.1_g148430 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 1.3e-31 141.4 84 77.4
Nn1g07335 Nelumbo nucifera HOM05D006724 ORTHO05D008514 1.8e-25 120.9 66 84.8
Os06g0353400 Oryza sativa ssp. japonica HOM05D006724 ORTHO05D008514 4.4e-24 116.3 161 44.7
Ca_24305_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 5.4e-22 109.4 62 80.6
Cre01.g033950 Chlamydomonas reinhardtii HOM05D005005 ORTHO05D006178 1.2e-16 91.7 223 30.0
unitig_86.g29839 Utricularia gibba HOM05D006724 ORTHO05D008514 3.4e-16 90.1 67 65.7
Cc04_g14120 Coffea canephora HOM05D006724 ORTHO05D008514 5.8e-16 89.4 59 71.2
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 1.7e-15 87.8 214 26.2
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 4.9e-15 86.3 213 26.3
CDE02G0934 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 6.4e-15 85.9 68 58.8
DCAR_025325 Daucus carota HOM05D005005 ORTHO05D006178 6.4e-15 85.9 224 25.9
Eucgr.J00681 Eucalyptus grandis HOM05D005005 ORTHO05D006178 1.1e-14 85.1 221 26.2
Hund07434 Selenicereus undatus HOM05D005005 ORTHO05D006178 1.1e-14 85.1 224 25.9
ATR1096G052 Amborella trichopoda HOM05D005005 ORTHO05D006178 4.2e-14 83.2 215 26.0
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 5.4e-14 82.8 209 25.8
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 5.4e-14 82.8 211 26.5
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 5.4e-14 82.8 222 25.2
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 9.3e-14 82.0 209 25.8
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 9.3e-14 82.0 240 26.2
MD07G1045900 Malus domestica HOM05D005005 ORTHO05D006178 9.3e-14 82.0 211 26.1
PGR119G1568 Punica granatum HOM05D005005 ORTHO05D006178 1.2e-13 81.6 218 25.2
GSVIVG01037328001 Vitis vinifera HOM05D005005 ORTHO05D006178 2.1e-13 80.9 245 25.7
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 6.0e-13 79.3 209 25.4
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 6.0e-13 79.3 209 25.4
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 6.0e-13 79.3 211 26.1
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 7.8e-13 79.0 211 26.5
CDE07G1185 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 7.8e-13 79.0 225 25.8
Nn7g36763 Nelumbo nucifera HOM05D005005 ORTHO05D006178 7.8e-13 79.0 316 24.1
CiPaw.14G111500 Carya illinoinensis HOM05D005005 ORTHO05D006178 1.0e-12 78.6 209 24.9
CDE04G1798 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.0e-12 78.6 225 25.3
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 6.6e-12 75.9 210 23.8
SMO367G0260 Selaginella moellendorffii HOM05D005005 ORTHO05D006178 9.6e-11 72.0 232 22.4
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 3.6e-10 70.1 215 27.4
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.4e-09 68.2 219 21.0
SGA_v2.0_scaffold79G25606 Striga asiatica HOM05D006724 ORTHO05D008514 9.0e-09 65.5 45 64.4
CDE02G0295 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 2.2e-07 60.8 127 27.6


User provided reference genes

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