Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 0.0e+00 1148.7 647 100.0
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 2.7e-259 898.7 593 77.4
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.5e-225 786.6 580 74.3
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 3.1e-215 752.3 579 69.9
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 6.1e-211 738.0 577 69.5
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 3.7e-176 622.5 568 57.9
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 4.5e-174 615.5 562 61.2
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.5e-172 610.5 571 59.5
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 3.1e-170 602.8 552 57.1
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 3.0e-165 586.3 581 55.9
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 4.0e-162 575.9 589 53.3
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.5e-161 573.9 565 54.5
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 2.0e-161 573.5 554 54.2
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.3e-160 570.9 556 53.8
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 4.1e-159 565.8 537 55.1
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 7.0e-159 565.1 576 55.4
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 1.6e-158 563.9 553 58.4
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 3.5e-158 562.8 564 56.6
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 1.6e-155 553.9 575 55.8
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 6.2e-155 552.0 568 51.8
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 5.2e-154 548.9 575 55.5
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.5e-153 547.4 577 54.8
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 7.5e-153 545.0 565 51.5
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 1.0e-149 534.6 534 50.9
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 1.2e-147 527.7 569 51.7
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 1.8e-146 523.9 583 51.6
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 2.4e-146 523.5 541 53.4
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 3.4e-145 519.6 569 52.0
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 4.4e-145 519.2 576 47.0
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 6.4e-144 515.4 578 53.3
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 1.1e-140 504.6 571 51.7
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.5e-140 503.4 577 46.6
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.3e-140 502.7 577 46.8
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 5.6e-140 502.3 559 51.3
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 9.6e-140 501.5 577 46.6
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 2.8e-139 500.0 560 47.0
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 3.6e-139 499.6 577 46.4
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 8.1e-139 498.4 551 49.4
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 2.6e-137 493.4 565 50.6
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.3e-136 491.1 531 48.6
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 5.4e-135 485.7 570 50.4
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.5e-134 483.0 559 48.7
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 4.6e-134 482.6 549 46.8
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 7.8e-134 481.9 568 49.5
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 5.1e-133 479.2 589 49.4
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 2.1e-131 473.8 560 48.6
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 6.2e-131 472.2 577 48.2
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 5.3e-130 469.2 590 46.9
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 1.2e-129 468.0 560 46.8
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 1.2e-129 468.0 556 46.8
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 4.5e-129 466.1 582 49.0
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 5.8e-129 465.7 545 49.4
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 7.6e-129 465.3 589 48.4
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 1.7e-128 464.2 539 50.1
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 3.8e-128 463.0 583 48.7
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 4.9e-128 462.6 571 48.7
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 2.4e-127 460.3 483 53.8
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 9.3e-127 458.4 564 47.2
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 8.7e-125 451.8 578 46.5
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 2.5e-124 450.3 587 47.5
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.3e-123 448.0 567 43.2
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 6.2e-123 445.7 592 46.1
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.4e-122 443.7 587 46.8
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 5.3e-122 442.6 566 45.6
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.4e-121 439.9 554 44.2
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 4.5e-121 439.5 541 51.0
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 4.5e-121 439.5 577 44.0
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 1.7e-120 437.6 590 43.1
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 3.2e-119 433.3 550 46.2
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 4.2e-119 433.0 576 45.3
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 2.7e-118 430.3 579 43.7
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 3.0e-117 426.8 414 61.1
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 5.1e-117 426.0 571 43.1
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 1.9e-116 424.1 411 54.7
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 2.1e-115 420.6 568 42.6
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 5.8e-113 412.5 584 40.4
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 2.9e-112 410.2 519 46.1
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 3.5e-110 403.3 503 45.3
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 1.8e-109 401.0 395 53.2
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 7.4e-108 395.6 365 55.6
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 9.7e-108 395.2 567 44.1
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 4.5e-105 386.3 549 43.5
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 1.3e-104 384.8 571 44.3
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 3.8e-104 383.3 418 53.6
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 1.4e-103 381.3 539 46.0
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.3e-99 368.2 557 40.2
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 2.2e-99 367.5 368 51.4
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 2.2e-99 367.5 339 56.0
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 3.1e-98 363.6 394 57.1
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 8.8e-93 345.5 238 71.4
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 2.0e-92 344.4 534 39.1
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.5e-89 334.7 484 44.0
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 2.0e-89 334.3 565 37.3
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 6.7e-85 319.3 529 37.6
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 2.8e-83 313.9 248 61.7
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.8e-82 311.2 534 34.3
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 2.2e-80 304.3 354 47.7
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.2e-78 298.5 528 36.6
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 2.7e-73 280.8 605 32.7
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 1.7e-72 278.1 314 49.4
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 3.4e-68 263.8 315 47.9
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.8e-66 258.1 263 52.9
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 1.2e-62 245.4 670 30.6
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 2.9e-59 234.2 374 37.2
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 3.3e-47 194.1 155 61.3
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 9.8e-44 182.6 328 42.1
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 1.2e-38 165.6 703 24.9
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 8.1e-38 162.9 114 63.2
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 2.2e-35 154.8 111 61.3
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 1.9e-34 151.8 128 53.1
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 1.9e-34 151.8 160 60.6
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 5.4e-34 150.2 113 56.6
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 1.0e-32 146.0 117 60.7
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 6.6e-32 143.3 188 47.9
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 2.1e-30 138.3 108 55.6
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 8.1e-30 136.3 104 56.7
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 1.1e-29 136.0 118 53.4
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 6.8e-29 133.3 120 51.7
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 7.6e-28 129.8 109 54.1
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 1.7e-27 128.6 148 46.6
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 8.4e-27 126.3 102 55.9
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 2.4e-26 124.8 110 49.1
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 1.7e-24 118.6 490 26.1
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 7.3e-23 113.2 84 58.3
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 9.6e-23 112.8 82 57.3
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 1.1e-21 109.4 90 62.2
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 3.1e-21 107.8 80 53.8
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.2e-20 105.9 88 55.7
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 5.8e-20 103.6 86 61.6
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.1e-18 99.4 78 51.3
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 4.6e-17 94.0 75 45.3
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 1.0e-16 92.8 95 49.5
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 1.7e-16 92.0 51 66.7
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 4.8e-14 84.0 63 58.7
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 2.4e-13 81.6 96 42.7
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.4e-12 77.8 75 45.3
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.4e-12 77.8 70 48.6
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 4.5e-12 77.4 80 45.0
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.6e-12 76.6 74 45.9
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 7.6e-12 76.6 74 45.9
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 8.4e-11 73.2 65 47.7
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.4e-10 72.4 104 35.6
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 3.2e-10 71.2 61 49.2
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.5e-09 67.8 106 33.0
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.0e-08 66.2 45 64.4
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.8e-08 65.5 40 55.0
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.3e-08 65.1 202 27.2
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 3.3e-07 61.2 50 54.0
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 1.3e-06 59.3 42 57.1
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 2.1e-06 58.5 63 52.4
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.8e-06 58.2 57 49.1
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 3.7e-06 57.8 42 59.5
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 6.2e-06 57.0 38 68.4


User provided reference genes

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