Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 9.2e-270 932.9 465 100.0
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 5.5e-246 854.0 465 92.7
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 1.6e-208 729.6 465 79.6
vmacro07854 Vaccinium macrocarpon HOM05D005933 ORTHO05D007366 7.7e-208 727.2 498 77.1
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 1.2e-205 719.9 465 78.5
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 6.3e-194 681.0 466 75.5
Hma1.2p1_2002F.1_g310760 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 1.2e-176 623.6 466 70.8
GSVIVG01033275001 Vitis vinifera HOM05D005933 ORTHO05D007366 1.7e-170 603.2 467 66.6
Lju124A41G42 Lonicera japonica HOM05D005933 ORTHO05D007366 3.9e-167 592.0 441 69.4
Solyc10g080110.3 Solanum lycopersicum HOM05D005933 ORTHO05D007366 3.6e-165 585.5 466 64.4
Sopen10g030730 Solanum pennellii HOM05D005933 ORTHO05D007366 3.6e-165 585.5 468 64.3
Haze_19854 Corylus avellana HOM05D005933 ORTHO05D007366 6.2e-165 584.7 468 64.5
Nitab4.5_0009442g0020 Nicotiana tabacum HOM05D005933 ORTHO05D007366 1.4e-164 583.6 468 65.4
PGSC0003DMG400023688 Solanum tuberosum HOM05D005933 ORTHO05D007366 6.8e-164 581.3 467 63.8
Nitab4.5_0008648g0010 Nicotiana tabacum HOM05D005933 ORTHO05D007366 1.5e-163 580.1 469 64.6
Oeu017944.1 Olea europaea HOM05D005933 ORTHO05D007366 3.7e-162 575.5 464 65.3
Dinv39604 Davidia involucrata HOM05D005933 ORTHO05D007366 4.9e-162 575.1 397 75.1
MSTRG.19860 Avicennia marina HOM05D005933 ORTHO05D007366 2.1e-160 569.7 465 64.3
Peaxi162Scf00618g00022 Petunia axillaris HOM05D005933 ORTHO05D007366 5.1e-159 565.1 465 63.0
CiPaw.08G166600 Carya illinoinensis HOM05D005933 ORTHO05D007366 1.1e-158 563.9 467 62.7
SalBow6G0452 Salvia bowleyana HOM05D005933 ORTHO05D007366 4.3e-158 562.0 451 64.5
Cc06_g17560 Coffea canephora HOM05D005933 ORTHO05D007366 6.8e-156 554.7 476 61.8
RcHm_v2.0_Chr3g0482381 Rosa chinensis HOM05D005933 ORTHO05D007366 6.8e-156 554.7 464 61.4
FAN14G1069 Fragaria x ananassa HOM05D005933 ORTHO05D007366 9.9e-155 550.8 464 61.6
FvH4_6g23820 Fragaria vesca HOM05D005933 ORTHO05D007366 1.7e-154 550.1 467 61.5
TWI74G0083 Tripterygium wilfordii HOM05D005933 ORTHO05D007366 1.7e-154 550.1 465 61.1
QL07p000522 Quercus lobata HOM05D005933 ORTHO05D007366 1.1e-153 547.4 466 61.6
Ciclev10004945m.g Citrus clementina HOM05D005933 ORTHO05D007366 1.9e-153 546.6 465 61.9
FAN05G5216 Fragaria x ananassa HOM05D005933 ORTHO05D007366 1.9e-153 546.6 468 61.1
SGA_v2.0_scaffold69G23116 Striga asiatica HOM05D005933 ORTHO05D007366 3.2e-153 545.8 473 60.0
Lsat_1_v5_gn_8_81281 Lactuca sativa HOM05D005933 ORTHO05D007366 4.2e-153 545.4 470 61.9
Manes.09G022000 Manihot esculenta HOM05D005933 ORTHO05D007366 4.2e-153 545.4 464 60.3
FAN02G2268 Fragaria x ananassa HOM05D005933 ORTHO05D007366 9.3e-153 544.3 470 60.9
Migut.J01758 Erythranthe guttata HOM05D005933 ORTHO05D007366 2.7e-152 542.7 470 62.1
QL07p000555 Quercus lobata HOM05D005933 ORTHO05D007366 6.0e-152 541.6 469 61.6
Potri.006G051300 Populus trichocarpa HOM05D005933 ORTHO05D007366 1.0e-151 540.8 464 58.6
CANSAT78G0457 Cannabis sativa HOM05D005933 ORTHO05D007366 6.6e-151 538.1 468 59.8
arahy.Tifrunner.gnm1.ann1.T110QE Arachis hypogaea HOM05D005933 ORTHO05D007366 1.9e-150 536.6 464 58.2
Eucgr.A02347 Eucalyptus grandis HOM05D005933 ORTHO05D007366 2.5e-150 536.2 458 60.7
arahy.Tifrunner.gnm1.ann1.EHL0AN Arachis hypogaea HOM05D005933 ORTHO05D007366 1.6e-149 533.5 464 57.5
HanXRQChr09g0252561 Helianthus annuus HOM05D005933 ORTHO05D007366 1.6e-149 533.5 466 60.7
Lj1g0013042 Lotus japonicus HOM05D005933 ORTHO05D007366 2.1e-149 533.1 465 58.7
MD12G1074000 Malus domestica HOM05D005933 ORTHO05D007366 3.6e-149 532.3 459 60.6
COL.COLO4_28284 Corchorus olitorius HOM05D005933 ORTHO05D007366 6.2e-149 531.6 468 60.0
DCAR_009061 Daucus carota HOM05D005933 ORTHO05D007366 6.2e-149 531.6 483 59.6
Thecc.05G153300 Theobroma cacao HOM05D005933 ORTHO05D007366 8.1e-149 531.2 471 60.3
Cpa.g.sc92.52 Carica papaya HOM05D005933 ORTHO05D007366 1.1e-148 530.8 465 59.6
Duzib093G2041 Durio zibethinus HOM05D005933 ORTHO05D007366 2.4e-148 529.6 469 60.1
Sabra06G0036000 Salix brachista HOM05D005933 ORTHO05D007366 2.4e-148 529.6 456 59.2
PGR004G0721 Punica granatum HOM05D005933 ORTHO05D007366 6.9e-148 528.1 465 60.2
ECA236G1702 Erigeron canadensis HOM05D005933 ORTHO05D007366 9.0e-148 527.7 473 60.5
Psat3g072720 Pisum sativum HOM05D005933 ORTHO05D007366 1.3e-146 523.9 469 58.2
Peaxi162Scf00354g00225 Petunia axillaris HOM05D005933 ORTHO05D007366 3.8e-146 522.3 452 60.8
Gohir.D11G173800 Gossypium hirsutum HOM05D005933 ORTHO05D007366 4.9e-146 521.9 469 60.8
Medtr7g091500 Medicago truncatula HOM05D005933 ORTHO05D007366 6.4e-146 521.5 465 58.1
Glyma.03G136900 Glycine max HOM05D005933 ORTHO05D007366 8.4e-146 521.2 465 57.4
Gorai.007G186200 Gossypium raimondii HOM05D005933 ORTHO05D007366 1.1e-145 520.8 469 60.8
Phvul.001G132100 Phaseolus vulgaris HOM05D005933 ORTHO05D007366 1.9e-145 520.0 465 57.8
Ca_08457_v3 Cicer arietinum L. HOM05D005933 ORTHO05D007366 2.4e-145 519.6 469 57.6
EL10Ac3g07091 Beta vulgaris HOM05D005933 ORTHO05D007366 3.5e-144 515.8 474 58.0
Hund05286 Selenicereus undatus HOM05D005933 ORTHO05D007366 1.3e-143 513.8 436 61.5
Lalb_Chr25g0287121 Lupinus albus HOM05D005933 ORTHO05D007366 1.7e-143 513.5 464 58.0
Thhalv10025158m.g Eutrema salsugineum HOM05D005933 ORTHO05D007366 1.5e-142 510.4 465 57.6
Gohir.A11G167500 Gossypium hirsutum HOM05D005933 ORTHO05D007366 1.9e-142 510.0 469 59.5
AT4G35910 Arabidopsis thaliana HOM05D005933 ORTHO05D007366 6.2e-141 505.0 465 56.8
AUR62026040 Chenopodium quinoa HOM05D005933 ORTHO05D007366 1.1e-140 504.2 470 57.0
Hma1.2p1_2002F.1_g310770 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 2.0e-139 500.0 348 73.9
Sp7g34530 Schrenkiella parvula HOM05D005933 ORTHO05D007366 4.5e-139 498.8 455 58.0
Sed0001053 Sechium edule HOM05D005933 ORTHO05D007366 9.9e-139 497.7 458 57.0
CARHR244310 Cardamine hirsuta HOM05D005933 ORTHO05D007366 1.3e-138 497.3 467 56.1
CAN.G128.8 Capsicum annuum HOM05D005933 ORTHO05D007366 1.7e-138 496.9 364 69.0
THA.LOC104811196 Tarenaya hassleriana HOM05D005933 ORTHO05D007366 4.9e-138 495.4 456 57.2
Aa31LG6G13690 Aethionema arabicum HOM05D005933 ORTHO05D007366 8.4e-138 494.6 468 55.6
AL7G15130 Arabidopsis lyrata HOM05D005933 ORTHO05D007366 3.2e-137 492.7 468 56.0
Carub.0007s0431 Capsella rubella HOM05D005933 ORTHO05D007366 7.1e-137 491.5 466 56.2
A01p02040 Brassica napus HOM05D005933 ORTHO05D007366 4.6e-136 488.8 456 58.3
PSO782G3339 Papaver somniferum HOM05D005933 ORTHO05D007366 1.0e-135 487.6 476 55.9
MELO3C009712.2 Cucumis melo HOM05D005933 ORTHO05D007366 1.3e-135 487.3 473 55.2
TPR.G854 Trifolium pratense HOM05D005933 ORTHO05D007366 3.9e-135 485.7 384 63.0
CsaV3_3G039700 Cucumis sativus L. HOM05D005933 ORTHO05D007366 6.7e-135 485.0 470 55.1
BraA01t00193Z Brassica rapa HOM05D005933 ORTHO05D007366 7.4e-134 481.5 457 57.8
VMungo1383G3081 Vigna mungo HOM05D005933 ORTHO05D007366 1.6e-133 480.3 566 47.5
BolC1t00214H Brassica oleracea HOM05D005933 ORTHO05D007366 4.8e-133 478.8 456 57.2
C01p02220 Brassica napus HOM05D005933 ORTHO05D007366 6.2e-133 478.4 459 56.4
BcaNung03520 Brassica carinata HOM05D005933 ORTHO05D007366 2.4e-132 476.5 457 56.7
ClCG10G016640 Citrullus lanatus HOM05D005933 ORTHO05D007366 2.4e-132 476.5 512 51.4
Aqoxy5G03564 Aquilegia oxysepala HOM05D005933 ORTHO05D007366 4.5e-131 472.2 468 53.8
Ah.13g075070 Amaranthus hybridus HOM05D005933 ORTHO05D007366 7.6e-131 471.5 461 54.7
AUR62024451 Chenopodium quinoa HOM05D005933 ORTHO05D007366 2.5e-129 466.5 512 51.6
Cfa008569 Carpinus fangiana HOM05D005933 ORTHO05D007366 3.5e-128 462.6 337 68.2
Atru.chr1.1098 Acer truncatum HOM05D005933 ORTHO05D007366 4.3e-126 455.7 381 62.2
MBI16_g31719_MAGBIO Magnolia biondii HOM05D005933 ORTHO05D007366 7.2e-121 438.3 467 52.0
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 3.9e-119 432.6 454 55.5
Oeu008914.1 Olea europaea HOM05D005933 ORTHO05D007366 1.4e-116 424.1 337 65.6
Oeu008916.1 Olea europaea HOM05D005933 ORTHO05D007366 1.4e-116 424.1 337 65.6
ATR0686G233 Amborella trichopoda HOM05D005933 ORTHO05D007366 7.9e-112 408.3 468 49.4
Prupe.7G060900 Prunus persica HOM05D005933 ORTHO05D007366 2.0e-110 403.7 331 62.2
Os12g0588900 Oryza sativa ssp. japonica HOM05D005933 ORTHO05D007366 3.1e-108 396.4 380 53.7
Rhsim03G0020400 Rhododendron simsii HOM05D005933 ORTHO05D007366 4.8e-101 372.5 234 82.1
Zm00001eb135000 Zea mays HOM05D005933 ORTHO05D007366 1.1e-100 371.3 396 51.0
Sc13g0001740 Simmondsia chinensis HOM05D005933 ORTHO05D007366 1.8e-95 354.0 306 61.1
SHI32975 Sapria himalayana HOM05D005933 ORTHO05D000023 2.3e-95 353.6 375 51.2
SEGI_18184 Sequoiadendron giganteum HOM05D005933 ORTHO05D007366 3.7e-93 346.3 447 42.3
TAR633G2718 Trochodendron aralioides HOM05D005933 ORTHO05D007366 6.1e-88 328.9 231 71.0
HPP92_017763 Vanilla planifolia HOM05D005933 ORTHO05D007366 1.4e-84 317.8 337 49.0
CDE09G0169 Ceratophyllum demersum HOM05D005933 ORTHO05D007366 1.6e-83 314.3 257 61.5
Glyma.19G139200 Glycine max HOM05D005933 ORTHO05D007366 3.5e-75 286.6 235 60.9
BcaNung04276 Brassica carinata HOM05D005933 ORTHO05D007366 3.8e-74 283.1 398 46.5
AagrBONN_evm.TU.Sc2ySwM_117.299 Anthoceros agrestis HOM05D005933 ORTHO05D007366 3.6e-72 276.6 450 39.6
Mapoly0165s0023 Marchantia polymorpha HOM05D005933 ORTHO05D007366 2.2e-69 267.3 504 34.5
SMO145G0218 Selaginella moellendorffii HOM05D005933 ORTHO05D007366 1.6e-64 251.1 356 41.0
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 9.5e-57 225.3 393 39.2
Pp3c14_19420 Physcomitrium patens HOM05D005933 ORTHO05D007366 1.6e-56 224.6 315 43.2
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 4.6e-51 206.5 173 59.0
Cfa017749 Carpinus fangiana HOM05D005933 ORTHO05D007366 7.6e-46 189.1 236 45.8
C07p62070 Brassica napus HOM05D005933 ORTHO05D007366 1.3e-45 188.3 160 61.2
BolC7t46624H Brassica oleracea HOM05D005933 ORTHO05D007366 1.3e-45 188.3 160 61.2
Atru.chr1.1100 Acer truncatum HOM05D005933 ORTHO05D007366 1.1e-44 185.3 181 54.7
Sc13g0001730 Simmondsia chinensis HOM05D005933 ORTHO05D007366 3.0e-42 177.2 149 57.7
CBR_g982 Chara braunii HOM05D005933 ORTHO05D007366 7.3e-41 172.6 433 30.5
Cc06_g12380 Coffea canephora HOM05D005933 ORTHO05D007366 2.4e-36 157.5 184 48.9
TAR633G2604 Trochodendron aralioides HOM05D005933 ORTHO05D007366 1.5e-33 148.3 103 71.8
MD12G1074100 Malus domestica HOM05D005933 ORTHO05D007366 1.1e-31 142.1 170 47.1
TAR636G2120 Trochodendron aralioides HOM05D005933 ORTHO05D007366 7.6e-30 136.0 116 60.3
BcaNung03522 Brassica carinata HOM05D005933 ORTHO05D007366 4.8e-24 116.7 123 48.0
Dinv12483 Davidia involucrata HOM05D005933 ORTHO05D007366 7.6e-22 109.4 114 57.9
Cre01.g043500 Chlamydomonas reinhardtii HOM05D005933 ORTHO05D007366 1.2e-19 102.1 187 37.4
Rhsim03G0022600 Rhododendron simsii HOM05D005933 ORTHO05D007366 7.9e-19 99.4 54 90.7
Rhsim03G0024000 Rhododendron simsii HOM05D005933 ORTHO05D007366 2.3e-18 97.8 54 88.9
Nn8g40508 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.1e-17 95.5 67 67.2
Nn8g40507 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.9e-12 78.2 101 48.5
SHI32976 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-11 75.5 120 40.8
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 3.5e-11 73.9 35 91.4


User provided reference genes

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