Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 8.5e-102 373.6 182 100.0
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 7.5e-50 201.1 164 57.3
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 2.9e-49 199.1 177 57.6
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 6.4e-41 171.4 120 62.5
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 4.1e-40 168.7 179 46.9
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.5e-39 165.6 120 60.0
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 3.5e-39 165.6 118 61.9
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.5e-39 165.6 165 49.1
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 4.6e-39 165.2 122 59.0
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 4.6e-39 165.2 123 60.2
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 1.0e-38 164.1 121 59.5
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.3e-38 163.7 165 48.5
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 1.3e-38 163.7 118 60.2
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 1.7e-38 163.3 120 61.7
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 1.7e-38 163.3 120 59.2
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 1.7e-38 163.3 175 48.6
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 1.7e-38 163.3 171 47.4
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 3.0e-38 162.5 120 60.8
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 3.0e-38 162.5 175 48.6
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 3.9e-38 162.2 122 58.2
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 3.9e-38 162.2 118 58.5
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 3.9e-38 162.2 120 59.2
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 5.1e-38 161.8 118 60.2
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 5.1e-38 161.8 119 58.8
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 5.1e-38 161.8 158 48.1
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 5.1e-38 161.8 120 58.3
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 6.6e-38 161.4 124 57.3
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 6.6e-38 161.4 121 56.2
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 6.6e-38 161.4 121 58.7
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 6.6e-38 161.4 119 58.8
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 8.6e-38 161.0 140 52.9
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 8.6e-38 161.0 119 58.8
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 8.6e-38 161.0 162 48.8
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 8.6e-38 161.0 125 54.4
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 1.1e-37 160.6 118 60.2
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.1e-37 160.6 142 52.1
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 1.1e-37 160.6 174 48.9
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 1.5e-37 160.2 166 47.0
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 1.5e-37 160.2 118 59.3
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.5e-37 160.2 142 51.4
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.9e-37 159.8 162 48.8
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.9e-37 159.8 162 48.8
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.9e-37 159.8 162 48.8
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.9e-37 159.8 162 48.8
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.9e-37 159.8 120 60.0
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 1.9e-37 159.8 118 58.5
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 2.5e-37 159.5 162 49.4
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 2.5e-37 159.5 162 49.4
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.5e-37 159.5 119 59.7
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 2.5e-37 159.5 118 58.5
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 3.3e-37 159.1 119 58.0
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 3.3e-37 159.1 119 58.0
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 4.3e-37 158.7 118 58.5
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 4.3e-37 158.7 124 58.1
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 4.3e-37 158.7 118 59.3
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 4.3e-37 158.7 118 59.3
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 4.3e-37 158.7 166 45.2
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 5.6e-37 158.3 119 58.8
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 5.6e-37 158.3 119 58.8
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 7.3e-37 157.9 119 58.8
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 7.3e-37 157.9 122 58.2
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 9.5e-37 157.5 118 58.5
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 9.5e-37 157.5 118 58.5
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 1.2e-36 157.1 118 56.8
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 1.2e-36 157.1 166 47.0
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 2.1e-36 156.4 119 58.0
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 2.8e-36 156.0 135 53.3
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 3.6e-36 155.6 116 59.5
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.6e-36 155.6 120 55.8
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 3.6e-36 155.6 121 56.2
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 4.7e-36 155.2 119 58.0
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 6.2e-36 154.8 118 57.6
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 8.1e-36 154.5 117 57.3
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 1.1e-35 154.1 151 49.0
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 1.4e-35 153.7 176 45.5
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.4e-35 153.7 123 53.7
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 3.1e-35 152.5 137 51.1
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 3.1e-35 152.5 167 46.1
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 3.1e-35 152.5 112 58.9
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 3.1e-35 152.5 141 51.8
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 3.1e-35 152.5 122 57.4
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 4.0e-35 152.1 119 55.5
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 5.2e-35 151.8 119 53.8
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 5.2e-35 151.8 121 56.2
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 6.8e-35 151.4 124 56.5
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.8e-35 151.4 112 57.1
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 8.9e-35 151.0 165 44.8
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 1.5e-34 150.2 122 54.9
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 1.5e-34 150.2 118 55.9
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 1.5e-34 150.2 118 54.2
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.6e-34 149.4 118 55.9
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 2.6e-34 149.4 118 55.9
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 3.4e-34 149.1 120 57.5
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 4.4e-34 148.7 119 54.6
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 4.4e-34 148.7 122 53.3
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 5.8e-34 148.3 121 54.5
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 5.8e-34 148.3 197 42.1
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 7.6e-34 147.9 122 54.1
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 7.6e-34 147.9 117 55.6
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 7.6e-34 147.9 117 55.6
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.3e-33 147.1 117 54.7
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 1.3e-33 147.1 165 45.5
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.7e-33 146.7 120 54.2
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 2.9e-33 146.0 121 53.7
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 2.9e-33 146.0 121 53.7
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 2.9e-33 146.0 121 53.7
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 2.9e-33 146.0 118 53.4
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 3.8e-33 145.6 195 45.1
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 3.8e-33 145.6 187 44.9
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 4.9e-33 145.2 137 48.2
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 1.4e-32 143.7 199 44.7
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 1.9e-32 143.3 109 56.9
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 1.9e-32 143.3 119 51.3
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 1.9e-32 143.3 115 53.0
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 2.4e-32 142.9 118 52.5
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.4e-32 142.9 118 53.4
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 2.4e-32 142.9 117 52.1
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 2.4e-32 142.9 119 53.8
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.4e-32 142.9 145 47.6
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.1e-32 142.1 121 51.2
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 4.1e-32 142.1 180 40.6
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 5.4e-32 141.7 165 43.6
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 7.1e-32 141.4 167 44.3
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 1.2e-31 140.6 120 51.7
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 2.1e-31 139.8 184 39.7
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 2.1e-31 139.8 118 56.8
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 2.7e-31 139.4 118 52.5
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.7e-31 139.4 123 50.4
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 3.5e-31 139.0 117 53.0
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 4.6e-31 138.7 118 51.7
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 3.9e-30 135.6 134 45.5
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 6.6e-30 134.8 112 53.6
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 6.6e-30 134.8 112 52.7
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 8.6e-30 134.4 166 39.8
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 1.5e-29 133.7 112 52.7
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 9.6e-29 131.0 146 43.8
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 6.2e-28 128.3 170 40.6
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.8e-27 126.7 170 39.4
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 1.2e-26 124.0 115 53.0
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 1.2e-26 124.0 118 48.3
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 5.8e-26 121.7 112 48.2
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 4.9e-25 118.6 108 50.9
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 8.4e-25 117.9 119 47.9
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 4.2e-24 115.5 188 37.2
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.2e-24 115.5 107 48.6
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 9.3e-24 114.4 102 49.0
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.6e-23 113.6 103 49.5
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 7.8e-23 111.3 107 49.5
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.5e-21 107.1 93 51.6
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 5.6e-21 105.1 174 38.5
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 1.3e-20 104.0 174 39.1
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 1.6e-20 103.6 120 43.3
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.6e-20 103.6 96 50.0
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 1.6e-20 103.6 172 36.6
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 6.2e-20 101.7 174 37.4
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.0e-19 99.0 82 48.8
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 1.2e-18 97.4 117 41.0
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.5e-18 97.1 103 47.6
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 1.5e-18 97.1 108 44.4
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 6.4e-17 91.7 107 43.9
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 8.4e-17 91.3 109 39.4
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.1e-16 88.2 93 48.4
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 9.3e-16 87.8 118 39.8
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 2.1e-15 86.7 76 52.6
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 2.1e-15 86.7 187 31.6
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 2.1e-12 76.6 47 68.1
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.6e-12 75.9 66 43.9
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 1.7e-09 67.0 146 30.8
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 2.4e-08 63.2 115 33.9
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 1.3e-06 57.4 41 63.4


User provided reference genes

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