Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim02G0112200 Rhododendron simsii HOM05D020172 ORTHO05D018188 1.6e-123 446.0 220 100.0
Rhsim02G0094900 Rhododendron simsii HOM05D020172 ORTHO05D018188 1.0e-29 134.4 113 66.4
Rhsim02G0155800 Rhododendron simsii HOM05D020172 ORTHO05D018188 1.0e-29 134.4 113 66.4
Rhsim13G0156900 Rhododendron simsii HOM05D020172 ORTHO05D018188 1.1e-26 124.4 113 61.1
Actinidia05344 Actinidia chinensis HOM05D007172 ORTHO05D018188 1.0e-21 107.8 91 61.5
Rhsim02G0017200 Rhododendron simsii HOM05D000045 ORTHO05D000067 7.0e-18 95.1 84 63.1
CSS0008662 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 4.3e-15 85.9 84 57.1
CAN.G1003.15 Capsicum annuum HOM05D007172 ORTHO05D009267 5.6e-15 85.5 76 59.2
CSS0049102 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 2.8e-14 83.2 84 57.1
Duzib106G0549 Durio zibethinus HOM05D007172 ORTHO05D018188 1.2e-12 77.8 78 48.7
Solyc10g084220.3 Solanum lycopersicum HOM05D000045 ORTHO05D000067 1.2e-12 77.8 82 53.7
Sopen10g033660 Solanum pennellii HOM05D000045 ORTHO05D000067 1.2e-12 77.8 82 53.7
ECA240G0528 Erigeron canadensis HOM05D000045 ORTHO05D000067 3.4e-12 76.3 81 54.3
HanXRQChr13g0409861 Helianthus annuus HOM05D000045 ORTHO05D000067 4.9e-11 72.4 81 50.6
CAN.G1778.6 Capsicum annuum HOM05D000045 ORTHO05D000067 6.4e-11 72.0 82 53.7
Dinv38359 Davidia involucrata HOM05D000045 ORTHO05D000067 8.3e-11 71.6 83 50.6
Nitab4.5_0008568g0050 Nicotiana tabacum HOM05D000045 ORTHO05D000067 8.3e-11 71.6 80 55.0
MSTRG.21827 Avicennia marina HOM05D000045 ORTHO05D000067 1.4e-10 70.9 84 48.8
Migut.N00138 Erythranthe guttata HOM05D000045 ORTHO05D000067 2.4e-10 70.1 84 47.6
Rhsim01G0140000 Rhododendron simsii HOM05D020172 ORTHO05D018188 3.2e-10 69.7 50 72.0
Migut.J00415 Erythranthe guttata HOM05D000855 ORTHO05D008530 5.4e-10 68.9 95 42.1
Nitab4.5_0001192g0010 Nicotiana tabacum HOM05D000045 ORTHO05D000067 9.2e-10 68.2 80 52.5
Hma1.2p1_0511F.1_g169165 Hydrangea macrophylla HOM05D000045 ORTHO05D000067 2.7e-09 66.6 83 47.0
MSTRG.24763 Avicennia marina HOM05D000045 ORTHO05D000067 4.6e-09 65.9 85 47.1
Lj3C805G16 Lonicera japonica HOM05D000045 ORTHO05D000067 4.6e-09 65.9 84 47.6
MELO3C009949.2 Cucumis melo HOM05D007390 ORTHO05D009114 6.0e-09 65.5 96 34.4
MSTRG.19138 Avicennia marina HOM05D000855 ORTHO05D008530 1.3e-08 64.3 95 38.9
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 1.3e-08 64.3 95 38.9
AUR62040505 Chenopodium quinoa HOM05D000855 ORTHO05D008530 1.7e-08 63.9 89 41.6
CsaV3_3G042310 Cucumis sativus L. HOM05D007390 ORTHO05D009114 1.7e-08 63.9 96 33.3
Migut.G00251 Erythranthe guttata HOM05D000045 ORTHO05D000067 1.7e-08 63.9 84 46.4
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 2.3e-08 63.5 113 38.9
EL10Ac7g17347 Beta vulgaris HOM05D000855 ORTHO05D008530 3.0e-08 63.2 89 41.6
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 3.0e-08 63.2 89 42.7
Thecc.05G053600 Theobroma cacao HOM05D000855 ORTHO05D008530 3.0e-08 63.2 89 42.7
HanXRQChr03g0079901 Helianthus annuus HOM05D000045 ORTHO05D000067 3.9e-08 62.8 81 48.1
PSO384G3372 Papaver somniferum HOM05D007172 ORTHO05D009267 3.9e-08 62.8 45 66.7
Migut.A00274 Erythranthe guttata HOM05D000175 ORTHO05D010751 8.6e-08 61.6 88 36.4
Hma1.2p1_0111F.1_g053850 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 8.6e-08 61.6 94 38.3
Hma1.2p1_0111F.1_g053860 Hydrangea macrophylla HOM05D000855 ORTHO05D008530 8.6e-08 61.6 94 38.3
PSO339G1228 Papaver somniferum HOM05D007172 ORTHO05D009267 8.6e-08 61.6 45 64.4
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 1.1e-07 61.2 112 35.7
AUR62042604 Chenopodium quinoa HOM05D000855 ORTHO05D008530 1.1e-07 61.2 89 40.4
SalBow3G1200 Salvia bowleyana HOM05D000855 ORTHO05D008530 1.1e-07 61.2 90 37.8
SalBow3G1712 Salvia bowleyana HOM05D000855 ORTHO05D008530 1.1e-07 61.2 90 37.8
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 1.5e-07 60.8 91 31.9
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 1.9e-07 60.5 90 40.0
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 2.5e-07 60.1 90 38.9
MBI16_g21730_MAGBIO Magnolia biondii HOM05D002825 ORTHO05D003824 3.3e-07 59.7 89 34.8
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 3.3e-07 59.7 90 37.8
Ah.08g211930 Amaranthus hybridus HOM05D000855 ORTHO05D008530 4.3e-07 59.3 89 38.2
Peaxi162Scf00141g00076 Petunia axillaris HOM05D020172 ORTHO05D018188 4.3e-07 59.3 41 61.0
QL07p045308 Quercus lobata HOM05D000855 ORTHO05D008530 5.6e-07 58.9 90 38.9
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 7.3e-07 58.5 90 37.8
AT3G09650 Arabidopsis thaliana HOM05D000855 ORTHO05D008530 7.3e-07 58.5 90 38.9
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 9.5e-07 58.2 85 32.9
Actinidia04698 Actinidia chinensis HOM05D000855 ORTHO05D008530 1.2e-06 57.8 89 39.3
FvH4_3g42580 Fragaria vesca HOM05D000002 ORTHO05D000001 1.2e-06 57.8 84 34.5
HanXRQChr16g0515891 Helianthus annuus HOM05D007956 ORTHO05D010152 1.2e-06 57.8 91 34.1
Lj1P1226T19 Lonicera japonica HOM05D007956 ORTHO05D010152 1.2e-06 57.8 90 32.2
HPP92_017937 Vanilla planifolia HOM05D000855 ORTHO05D008530 1.2e-06 57.8 101 37.6
Atru.BG.218.p Acer truncatum HOM05D000855 ORTHO05D008530 1.6e-06 57.4 90 36.7
Os05g0365500 Oryza sativa ssp. japonica HOM05D002825 ORTHO05D003824 2.1e-06 57.0 84 36.9
Prupe.6G241600 Prunus persica HOM05D000855 ORTHO05D008530 2.1e-06 57.0 90 37.8
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 2.8e-06 56.6 111 29.7
FAN11G0418 Fragaria x ananassa HOM05D003757 ORTHO05D000090 2.8e-06 56.6 84 33.3
FAN14G2211 Fragaria x ananassa HOM05D000855 ORTHO05D008530 2.8e-06 56.6 90 35.6
GSVIVG01012774001 Vitis vinifera HOM05D007390 ORTHO05D009114 2.8e-06 56.6 91 31.9
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 3.6e-06 56.2 105 34.3
Ciclev10011148m.g Citrus clementina HOM05D000855 ORTHO05D008530 3.6e-06 56.2 90 37.8
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 3.6e-06 56.2 86 31.4
GSVIVG01025536001 Vitis vinifera HOM05D000855 ORTHO05D008530 3.6e-06 56.2 123 33.3
Haze_20657 Corylus avellana HOM05D000855 ORTHO05D008530 4.7e-06 55.8 89 38.2
MD13G1249100 Malus domestica HOM05D003056 ORTHO05D003422 4.7e-06 55.8 101 27.7
Nn2g12986 Nelumbo nucifera HOM05D000855 ORTHO05D008530 4.7e-06 55.8 111 34.2
Sabra08G0161300 Salix brachista HOM05D000045 ORTHO05D000067 4.7e-06 55.8 80 42.5
Solyc12g014330.1 Solanum lycopersicum HOM05D002453 ORTHO05D008746 4.7e-06 55.8 80 33.8
Sopen12g006110 Solanum pennellii HOM05D002453 ORTHO05D008746 4.7e-06 55.8 80 33.8
Cc06_g01640 Coffea canephora HOM05D007172 ORTHO05D009267 6.2e-06 55.5 47 53.2
DCAR_013239 Daucus carota HOM05D007390 ORTHO05D009114 6.2e-06 55.5 90 31.1
PGR119G1066 Punica granatum HOM05D000855 ORTHO05D000003 8.1e-06 55.1 84 33.3
SMO010G0006 Selaginella moellendorffii HOM05D000855 ORTHO05D000003 8.1e-06 55.1 90 34.4
Zm00001eb259410 Zea mays HOM05D027950 ORTHO05D011021 8.1e-06 55.1 99 32.3


User provided reference genes

Program Settings