Gene: AT3G09650
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G09650
- Transcript Identifier AT3G09650.1
- Gene Type Coding gene
- Location Chr3 : 2958704-2961040 : positive
Gene Family Information
- ID HOM05D000855
- #Genes/#Species 698/99
- Phylogenetic origin
- ID ORTHO05D008530
- #Genes/#Species 118/89
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G09650.1
- symbol HCF152
- Alias CRM3
- full_name HIGH CHLOROPHYLL FLUORESCENCE 152
- uniprot Q9SF38
Descriptions
- Description Tetratricopeptide repeat (TPR)-like superfamily protein
- Computational description HIGH CHLOROPHYLL FLUORESCENCE 152 (HCF152); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G03100.1); Has 43769 Blast hits to 13527 proteins in 285 species: Archae - 3; Bacteria - 26; Metazoa - 343; Fungi - 654; Plants - 41314; Viruses - 0; Other Eukaryotes - 1429 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006397 | IMP IBA | Gene Ontology | mRNA processing | 1 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | IDA | Gene Ontology | mRNA binding | 1 |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0000166 | IEA | GOA Database | nucleotide binding | |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | IEA | GOA Database | chloroplast | |
| GO:0009507 | ISM | Gene Ontology | chloroplast | |
| GO:0009570 | IEA | GOA Database | chloroplast stroma | |
| GO:0009570 | IDA | Gene Ontology | chloroplast stroma | 1 |
| GO:0009536 | IEA | GOA Database | plastid |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.11.5.4 | RNA processing.organelle machinery.post-transcriptional gene expression regulation.plastidial transcript stability factor (HCF152) |