Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.0e-245 852.0 443 100.0
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.8e-214 749.2 443 88.5
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 5.4e-211 737.6 443 86.7
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 2.7e-210 735.3 440 87.0
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 1.0e-209 733.4 443 86.0
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 1.3e-209 733.0 440 86.1
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.7e-209 732.6 440 87.3
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 2.3e-209 732.3 440 86.6
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 5.1e-209 731.1 439 85.6
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 8.7e-209 730.3 439 86.6
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 1.1e-208 729.9 443 85.3
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.5e-208 729.6 442 86.0
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 1.9e-208 729.2 438 86.5
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 1.9e-208 729.2 441 86.4
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 1.9e-208 729.2 470 82.3
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 1.9e-208 729.2 470 82.3
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 2.5e-208 728.8 441 86.4
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 4.3e-208 728.0 438 86.1
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 4.3e-208 728.0 439 86.6
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 5.6e-208 727.6 439 86.1
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 5.6e-208 727.6 443 86.5
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 1.6e-207 726.1 438 86.3
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 2.8e-207 725.3 441 85.9
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.8e-207 725.3 439 85.2
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 6.2e-207 724.2 437 87.0
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 8.1e-207 723.8 439 85.4
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 8.1e-207 723.8 438 85.8
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 8.1e-207 723.8 441 85.5
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 1.4e-206 723.0 439 85.0
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 4.0e-206 721.5 438 85.2
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 5.3e-206 721.1 438 85.2
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 6.9e-206 720.7 448 84.2
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 6.9e-206 720.7 438 86.1
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 9.0e-206 720.3 438 86.1
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 1.5e-205 719.5 439 84.7
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 2.6e-205 718.8 438 85.8
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 2.6e-205 718.8 438 85.2
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 3.4e-205 718.4 443 84.9
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 4.5e-205 718.0 438 86.1
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 5.8e-205 717.6 439 84.7
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 5.8e-205 717.6 438 84.9
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 7.6e-205 717.2 437 85.1
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 9.9e-205 716.8 438 86.1
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 1.3e-204 716.5 439 84.7
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 1.3e-204 716.5 439 85.2
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 1.3e-204 716.5 438 84.7
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 1.3e-204 716.5 438 84.7
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 1.3e-204 716.5 438 84.7
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 1.7e-204 716.1 438 85.4
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 2.2e-204 715.7 439 84.3
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 2.2e-204 715.7 472 81.8
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 3.8e-204 714.9 438 84.2
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 3.8e-204 714.9 437 85.4
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 3.8e-204 714.9 443 84.7
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 3.8e-204 714.9 439 85.4
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 4.9e-204 714.5 440 83.4
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 4.9e-204 714.5 440 84.8
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 8.4e-204 713.8 438 84.5
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 8.4e-204 713.8 438 84.7
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 8.4e-204 713.8 439 85.2
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 1.1e-203 713.4 442 84.2
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 1.4e-203 713.0 437 84.7
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.4e-203 713.0 438 84.5
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 2.4e-203 712.2 440 84.5
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 2.4e-203 712.2 443 83.7
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 3.2e-203 711.8 438 84.7
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 4.2e-203 711.4 438 84.2
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 4.2e-203 711.4 438 84.9
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 5.4e-203 711.1 438 83.8
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 7.1e-203 710.7 442 83.5
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 7.1e-203 710.7 442 83.5
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 9.3e-203 710.3 442 83.9
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 9.3e-203 710.3 438 84.5
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 9.3e-203 710.3 439 84.5
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 1.2e-202 709.9 440 83.0
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 1.6e-202 709.5 442 83.9
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 2.1e-202 709.1 440 83.2
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 2.1e-202 709.1 442 83.9
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 2.1e-202 709.1 440 83.9
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 2.1e-202 709.1 443 83.1
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 3.5e-202 708.4 440 83.0
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 3.5e-202 708.4 443 83.3
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 6.0e-202 707.6 442 83.3
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 6.0e-202 707.6 438 84.2
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 7.9e-202 707.2 437 84.4
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 7.9e-202 707.2 437 84.4
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 7.9e-202 707.2 440 82.7
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 1.0e-201 706.8 442 83.7
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 1.8e-201 706.1 442 83.5
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 3.9e-201 704.9 442 83.3
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 3.9e-201 704.9 438 83.3
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 8.7e-201 703.7 438 83.1
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 8.7e-201 703.7 453 81.7
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 1.5e-200 703.0 440 82.3
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.9e-200 702.6 455 81.1
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 2.5e-200 702.2 442 83.0
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 2.5e-200 702.2 440 82.3
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 4.3e-200 701.4 442 82.6
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 5.6e-200 701.0 440 82.7
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 7.4e-200 700.7 440 81.4
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 9.6e-200 700.3 442 82.8
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 2.1e-199 699.1 435 83.7
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 3.7e-199 698.4 443 82.2
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 3.7e-199 698.4 440 82.3
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 4.8e-199 698.0 442 82.6
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 4.8e-199 698.0 442 82.6
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 4.8e-199 698.0 447 82.6
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 4.8e-199 698.0 438 84.5
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 8.1e-199 697.2 433 83.6
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 2.4e-198 695.7 440 81.1
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 4.0e-198 694.9 440 81.1
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 6.9e-198 694.1 470 78.5
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 7.6e-197 690.6 440 80.9
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 7.6e-197 690.6 440 82.7
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 1.1e-195 686.8 443 79.5
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 2.7e-194 682.2 442 80.8
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 6.0e-194 681.0 446 79.1
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 1.8e-190 669.5 394 87.6
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 1.0e-188 663.7 521 70.8
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 1.9e-187 659.4 405 84.7
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.5e-187 659.1 488 74.6
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 4.2e-187 658.3 440 78.6
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 7.9e-186 654.1 438 79.5
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.9e-184 649.4 435 80.2
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 9.7e-184 647.1 432 78.0
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 1.4e-182 643.3 398 82.4
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 5.0e-180 634.8 383 85.6
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 6.5e-180 634.4 406 81.3
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 3.6e-178 628.6 392 82.7
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 2.2e-175 619.4 453 71.5
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 1.9e-171 606.3 421 74.8
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 1.4e-169 600.1 433 71.8
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 6.7e-169 597.8 440 73.2
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.1e-166 590.5 430 74.4
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 1.0e-164 583.9 354 85.3
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 1.5e-160 570.1 313 93.3
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 1.4e-158 563.5 417 68.3
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 3.2e-147 525.8 480 65.2
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 8.8e-145 517.7 412 65.0
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 2.4e-142 509.6 423 62.6
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 8.9e-137 491.1 276 91.3
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 2.6e-136 489.6 414 61.8
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.7e-135 486.9 304 82.6
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 5.4e-126 455.3 411 64.7
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 1.5e-120 437.2 260 85.0
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 6.6e-116 421.8 238 89.9
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 4.9e-111 405.6 256 80.9
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 7.3e-107 391.7 245 82.9
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.1e-99 367.9 264 73.5
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 4.3e-99 365.9 205 90.7
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 3.5e-85 319.7 307 60.9
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 2.2e-71 273.9 296 50.0
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 9.3e-70 268.5 227 64.3
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 8.7e-68 261.9 147 87.1
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 8.2e-58 228.8 191 58.6
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 7.4e-51 205.7 181 65.2
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 2.4e-49 200.7 154 66.2
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 1.5e-43 181.4 102 94.1
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 1.3e-42 178.3 139 64.7
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 2.6e-40 170.6 110 80.9
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 2.2e-39 167.5 289 37.0
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.9e-38 164.5 170 59.4
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 2.2e-34 151.0 157 58.0
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 8.3e-34 149.1 157 58.0
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.5e-30 138.3 82 87.8
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 1.6e-29 134.8 149 57.0
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 7.0e-25 119.4 73 82.2
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 9.1e-25 119.0 198 36.4
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 5.0e-15 86.7 100 53.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 2.5e-14 84.3 48 89.6
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 1.4e-12 78.6 47 87.2
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 7.5e-11 72.8 40 92.5
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 3.7e-10 70.5 37 89.2
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 1.1e-09 68.9 111 36.9
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 1.4e-09 68.6 111 36.9
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 5.4e-09 66.6 63 55.6
HanXRQChr15g0475161 Helianthus annuus HOM05D004007 ORTHO05D222506 9.5e-06 55.8 34 76.5


User provided reference genes

Program Settings