Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 4.3e-192 674.5 337 100.0
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 6.2e-175 617.5 337 91.1
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 8.5e-156 553.9 340 79.7
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 3.9e-153 545.0 338 80.2
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 5.0e-140 501.5 338 75.4
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 1.2e-138 496.9 332 74.1
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 6.1e-138 494.6 333 72.4
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 6.7e-137 491.1 333 73.9
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 2.0e-136 489.6 333 74.2
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 2.6e-136 489.2 333 72.1
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 4.4e-136 488.4 333 71.5
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 2.2e-135 486.1 333 70.6
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 2.2e-135 486.1 333 70.9
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 3.7e-135 485.3 331 72.2
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 2.4e-134 482.6 333 70.6
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.2e-133 480.3 333 71.5
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 1.2e-133 480.3 336 71.1
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.7e-132 476.5 333 70.0
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 4.7e-130 468.4 335 69.9
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 1.2e-128 463.8 337 69.1
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 4.4e-128 461.8 333 69.7
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 4.4e-128 461.8 332 68.1
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 5.7e-128 461.5 337 68.5
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 5.7e-128 461.5 331 70.7
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.3e-127 460.3 338 68.9
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.7e-127 459.9 338 68.6
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 2.8e-127 459.1 332 69.0
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 1.1e-126 457.2 337 68.5
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 2.4e-126 456.1 338 67.5
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 3.1e-126 455.7 337 69.4
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 4.1e-126 455.3 337 68.5
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 5.4e-126 454.9 329 68.7
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 7.0e-126 454.5 330 66.4
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 1.2e-125 453.8 332 67.2
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 1.7e-124 449.9 335 67.2
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 1.7e-124 449.9 334 67.1
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 2.9e-124 449.1 332 67.8
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 5.0e-124 448.4 333 69.1
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 3.2e-123 445.7 332 67.5
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 4.2e-123 445.3 350 66.6
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 5.5e-123 444.9 332 66.3
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 1.2e-122 443.7 332 66.9
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 1.6e-122 443.4 332 66.6
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 2.1e-122 443.0 332 66.6
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 2.1e-122 443.0 333 69.4
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 6.1e-122 441.4 336 67.0
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 6.1e-122 441.4 332 65.1
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 6.1e-122 441.4 336 66.4
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 6.1e-122 441.4 330 67.0
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 1.8e-121 439.9 334 65.9
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 2.3e-121 439.5 332 65.1
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 3.0e-121 439.1 337 67.4
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 6.8e-121 438.0 334 66.2
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 6.8e-121 438.0 334 66.2
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 1.2e-120 437.2 332 64.8
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 2.6e-120 436.0 332 64.5
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 3.4e-120 435.6 382 60.5
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 5.7e-120 434.9 332 64.5
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 2.2e-119 433.0 356 63.5
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 4.1e-118 428.7 333 64.3
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 1.6e-117 426.8 347 62.5
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 7.7e-117 424.5 329 66.9
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 2.9e-116 422.5 333 62.8
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 2.9e-116 422.5 335 63.9
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 1.9e-115 419.9 324 68.5
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 4.0e-113 412.1 331 62.2
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 2.2e-111 406.4 332 62.3
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 1.8e-110 403.3 342 62.9
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 3.5e-109 399.1 337 61.4
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 1.0e-108 397.5 337 60.5
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 1.0e-108 397.5 335 60.9
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 8.6e-108 394.4 335 60.9
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 2.1e-106 389.8 337 60.2
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 3.6e-106 389.0 332 59.6
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 3.6e-106 389.0 335 60.6
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 3.6e-106 389.0 335 60.6
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 1.0e-105 387.5 332 59.3
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 2.6e-104 382.9 337 57.9
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 3.7e-103 379.0 352 56.5
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 8.3e-103 377.9 292 65.8
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 1.4e-102 377.1 337 58.2
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 1.6e-101 373.6 335 57.9
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 1.6e-101 373.6 338 57.1
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 7.8e-101 371.3 335 59.4
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 1.0e-100 370.9 333 57.1
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 1.7e-100 370.2 331 56.2
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 5.0e-100 368.6 332 57.5
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 8.6e-100 367.9 238 76.1
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 2.8e-98 362.8 332 55.7
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 4.7e-98 362.1 335 57.3
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 8.1e-98 361.3 335 57.0
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 2.0e-96 356.7 307 59.3
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 7.5e-96 354.8 339 56.9
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 1.1e-94 350.9 328 56.1
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.6e-93 347.1 302 61.9
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 5.6e-83 312.0 244 65.6
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 2.6e-80 303.1 338 50.3
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 1.4e-78 297.4 276 55.8
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 1.5e-75 287.3 358 44.4
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 2.9e-71 273.1 340 45.6
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 3.5e-69 266.2 183 73.2
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 7.6e-64 248.4 311 44.4
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 3.8e-63 246.1 467 36.6
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 6.9e-57 225.3 347 38.0
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 3.4e-56 223.0 191 60.7
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 7.6e-56 221.9 147 71.4
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 5.1e-52 209.1 336 40.2
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 1.9e-51 207.2 162 66.0
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 7.2e-38 162.2 178 52.8
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.8e-36 157.5 162 53.1
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 2.0e-35 154.1 147 52.4
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 4.3e-35 152.9 158 48.7
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 1.8e-33 147.5 103 64.1
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 1.3e-31 141.4 150 48.7
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 1.2e-29 134.8 81 77.8
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 5.3e-25 119.4 76 71.1
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 6.5e-23 112.5 60 81.7
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 1.3e-18 98.2 133 41.4
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 2.9e-15 87.0 57 70.2
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 4.2e-14 83.2 58 65.5
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 4.7e-13 79.7 82 48.8
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 1.0e-12 78.6 133 41.4
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 5.2e-12 76.3 55 70.9
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 1.2e-08 65.1 81 46.9
Dinv43551 Davidia involucrata HOM05D006268 ORTHO05D180404 2.9e-07 60.5 77 42.9


User provided reference genes

Program Settings