Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Rhsim01G0069900 Rhododendron simsii HOM05D001717 ORTHO05D339596 5.2e-135 484.6 280 100.0
Rhsim01G0079800 Rhododendron simsii HOM05D001717 ORTHO05D022168 4.0e-10 69.7 50 80.0
Rhsim01G0085400 Rhododendron simsii HOM05D052573 ORTHO05D022168 4.0e-10 69.7 35 100.0
Rhsim01G0087800 Rhododendron simsii HOM05D001717 ORTHO05D022168 3.4e-09 66.6 50 78.0
Nn8g38788 Nelumbo nucifera HOM05D001717 ORTHO05D007217 3.8e-08 63.2 38 81.6
Aqoxy7G01155 Aquilegia oxysepala HOM05D001717 ORTHO05D007217 8.4e-08 62.0 38 81.6
MSTRG.26445 Avicennia marina HOM05D001717 ORTHO05D007217 8.4e-08 62.0 54 63.0
CSS0031227 Camellia sinensis var. sinensis HOM05D001717 ORTHO05D007217 8.4e-08 62.0 35 85.7
Migut.L01523 Erythranthe guttata HOM05D001717 ORTHO05D007217 8.4e-08 62.0 38 81.6
Hma1.2p1_0672F.1_g200970 Hydrangea macrophylla HOM05D001717 ORTHO05D007217 8.4e-08 62.0 38 81.6
SalBow1G4112 Salvia bowleyana HOM05D001717 ORTHO05D007217 8.4e-08 62.0 38 81.6
Atru.chr7.1632 Acer truncatum HOM05D001717 ORTHO05D007217 1.1e-07 61.6 35 85.7
FAN26G1636 Fragaria x ananassa HOM05D001717 ORTHO05D007217 1.1e-07 61.6 49 65.3
PSO832G4340 Papaver somniferum HOM05D001717 ORTHO05D007217 1.1e-07 61.6 45 68.9
vmacro06304 Vaccinium macrocarpon HOM05D001717 ORTHO05D007217 1.1e-07 61.6 35 85.7
MD02G1083500 Malus domestica HOM05D001717 ORTHO05D007217 1.4e-07 61.2 38 76.3
Aa31LG3G12920 Aethionema arabicum HOM05D001717 ORTHO05D007217 1.9e-07 60.8 38 78.9
Cpa.g.sc28.134 Carica papaya HOM05D001717 ORTHO05D007217 1.9e-07 60.8 38 78.9
DCAR_028276 Daucus carota HOM05D001717 ORTHO05D007217 1.9e-07 60.8 38 78.9
Dinv36788 Davidia involucrata HOM05D001717 ORTHO05D007217 1.9e-07 60.8 38 78.9
Lj4A290G39 Lonicera japonica HOM05D001717 ORTHO05D007217 1.9e-07 60.8 38 78.9
Oeu051301.2 Olea europaea HOM05D001717 ORTHO05D007217 1.9e-07 60.8 38 78.9
SGA_v2.0_scaffold21G09418 Striga asiatica HOM05D001717 ORTHO05D007217 1.9e-07 60.8 38 78.9
TWI34G1733 Tripterygium wilfordii HOM05D001717 ORTHO05D007217 1.9e-07 60.8 38 76.3
GSVIVG01015169001 Vitis vinifera HOM05D001717 ORTHO05D007217 1.9e-07 60.8 38 78.9
Actinidia29912 Actinidia chinensis HOM05D001717 ORTHO05D007217 2.4e-07 60.5 35 82.9
Actinidia38458 Actinidia chinensis HOM05D001717 ORTHO05D007217 2.4e-07 60.5 35 82.9
Ah.09g228040 Amaranthus hybridus HOM05D001717 ORTHO05D007217 2.4e-07 60.5 38 78.9
CANSAT37G0002 Cannabis sativa HOM05D001717 ORTHO05D007217 2.4e-07 60.5 35 82.9
Ciclev10008410m.g Citrus clementina HOM05D001717 ORTHO05D007217 2.4e-07 60.5 35 82.9
Thhalv10013234m.g Eutrema salsugineum HOM05D001717 ORTHO05D007217 2.4e-07 60.5 35 82.9
Potri.006G147300 Populus trichocarpa HOM05D001717 ORTHO05D007217 2.4e-07 60.5 35 82.9
THA.LOC104811752 Tarenaya hassleriana HOM05D001717 ORTHO05D007217 2.4e-07 60.5 35 82.9
CDE05G1519 Ceratophyllum demersum HOM05D001717 ORTHO05D007217 3.2e-07 60.1 38 76.3
FAN26G2680 Fragaria x ananassa HOM05D001717 ORTHO05D007217 3.2e-07 60.1 36 77.8
FAN28G1754 Fragaria x ananassa HOM05D001717 ORTHO05D007217 3.2e-07 60.1 36 77.8
PSO063G2279 Papaver somniferum HOM05D001717 ORTHO05D007217 3.2e-07 60.1 35 82.9
Cfa003054 Carpinus fangiana HOM05D001717 ORTHO05D007217 4.2e-07 59.7 35 80.0
Cc06_g11680 Coffea canephora HOM05D001717 ORTHO05D007217 4.2e-07 59.7 38 76.3
Eucgr.C03415 Eucalyptus grandis HOM05D001717 ORTHO05D007217 4.2e-07 59.7 38 76.3
FvH4_1g07950 Fragaria vesca HOM05D001717 ORTHO05D007217 4.2e-07 59.7 38 76.3
FAN19G0647 Fragaria x ananassa HOM05D001717 ORTHO05D007217 4.2e-07 59.7 38 76.3
FAN23G2221 Fragaria x ananassa HOM05D001717 ORTHO05D007217 4.2e-07 59.7 38 76.3
arahy.Tifrunner.gnm1.ann1.1PI95V Arachis hypogaea HOM05D001717 ORTHO05D007217 5.4e-07 59.3 35 80.0
arahy.Tifrunner.gnm1.ann1.HJX0E8 Arachis hypogaea HOM05D001717 ORTHO05D007217 5.4e-07 59.3 35 80.0
CAN.G1583.7 Capsicum annuum HOM05D001717 ORTHO05D007217 5.4e-07 59.3 40 70.0
CiPaw.04G147700 Carya illinoinensis HOM05D001717 ORTHO05D007217 5.4e-07 59.3 35 80.0
ClCG11G001670 Citrullus lanatus HOM05D001717 ORTHO05D007217 5.4e-07 59.3 35 80.0
Haze_25942 Corylus avellana HOM05D001717 ORTHO05D007217 5.4e-07 59.3 35 80.0
MELO3C004633.2 Cucumis melo HOM05D001717 ORTHO05D007217 5.4e-07 59.3 35 80.0
CsaV3_2G001370 Cucumis sativus L. HOM05D001717 ORTHO05D007217 5.4e-07 59.3 35 80.0
Dinv42343 Davidia involucrata HOM05D001717 ORTHO05D007217 5.4e-07 59.3 38 76.3
Lj6g0021332 Lotus japonicus HOM05D001717 ORTHO05D007217 5.4e-07 59.3 35 80.0
Manes.16G099600 Manihot esculenta HOM05D001717 ORTHO05D007217 5.4e-07 59.3 40 75.0
Nitab4.5_0002642g0140 Nicotiana tabacum HOM05D001717 ORTHO05D007217 5.4e-07 59.3 40 70.0
Nitab4.5_0002824g0130 Nicotiana tabacum HOM05D001717 ORTHO05D007217 5.4e-07 59.3 40 70.0
Peaxi162Scf00498g00430 Petunia axillaris HOM05D001717 ORTHO05D007217 5.4e-07 59.3 40 70.0
Prupe.7G205600 Prunus persica HOM05D001717 ORTHO05D007217 5.4e-07 59.3 35 80.0
PGR044G0216 Punica granatum HOM05D001717 ORTHO05D007217 5.4e-07 59.3 35 80.0
QL02p062060 Quercus lobata HOM05D001717 ORTHO05D007217 5.4e-07 59.3 35 80.0
RcHm_v2.0_Chr2g0093831 Rosa chinensis HOM05D001717 ORTHO05D007217 5.4e-07 59.3 35 80.0
Solyc12g008980.3 Solanum lycopersicum HOM05D001717 ORTHO05D007217 5.4e-07 59.3 40 70.0
Sopen12g003910 Solanum pennellii HOM05D001717 ORTHO05D007217 5.4e-07 59.3 40 70.0
PGSC0003DMG400000333 Solanum tuberosum HOM05D001717 ORTHO05D007217 5.4e-07 59.3 40 70.0
TAR626G1800 Trochodendron aralioides HOM05D001717 ORTHO05D007217 5.4e-07 59.3 38 76.3
AL8G32930 Arabidopsis lyrata HOM05D001717 ORTHO05D007217 7.1e-07 58.9 38 76.3
AT5G57030 Arabidopsis thaliana HOM05D001717 ORTHO05D007217 7.1e-07 58.9 38 76.3
BcaC04g20021 Brassica carinata HOM05D001717 ORTHO05D007217 7.1e-07 58.9 35 80.0
A10p14350 Brassica napus HOM05D001717 ORTHO05D007217 7.1e-07 58.9 35 80.0
C09p48690 Brassica napus HOM05D001717 ORTHO05D007217 7.1e-07 58.9 35 80.0
BolC9t57717H Brassica oleracea HOM05D001717 ORTHO05D007217 7.1e-07 58.9 35 80.0
BraA10t43526Z Brassica rapa HOM05D001717 ORTHO05D007217 7.1e-07 58.9 35 80.0
Carub.0008s1753 Capsella rubella HOM05D001717 ORTHO05D007217 7.1e-07 58.9 38 76.3
CARHR270780 Cardamine hirsuta HOM05D001717 ORTHO05D007217 7.1e-07 58.9 38 76.3
COL.COLO4_18171 Corchorus olitorius HOM05D001717 ORTHO05D007217 7.1e-07 58.9 35 80.0
Duzib187G0409 Durio zibethinus HOM05D001717 ORTHO05D007217 7.1e-07 58.9 35 80.0
Gohir.D05G032700 Gossypium hirsutum HOM05D001717 ORTHO05D007217 7.1e-07 58.9 35 80.0
Lalb_Chr08g0232411 Lupinus albus HOM05D001717 ORTHO05D007217 7.1e-07 58.9 35 80.0
Rhsim03G0231100 Rhododendron simsii HOM05D001717 ORTHO05D007217 7.1e-07 58.9 35 80.0
Sabra06G0116300 Salix brachista HOM05D001717 ORTHO05D007217 7.1e-07 58.9 35 80.0
Sp6g18740 Schrenkiella parvula HOM05D001717 ORTHO05D007217 7.1e-07 58.9 38 78.9
Thecc.09G084800 Theobroma cacao HOM05D001717 ORTHO05D007217 7.1e-07 58.9 35 80.0
BcaB08g36016 Brassica carinata HOM05D001717 ORTHO05D007217 9.3e-07 58.5 35 80.0
AUR62029030 Chenopodium quinoa HOM05D001717 ORTHO05D007217 9.3e-07 58.5 38 76.3
AUR62033926 Chenopodium quinoa HOM05D001717 ORTHO05D007217 9.3e-07 58.5 38 76.3
Sc18g0002290 Simmondsia chinensis HOM05D001717 ORTHO05D007217 9.3e-07 58.5 38 73.7
Gohir.A05G031300 Gossypium hirsutum HOM05D001717 ORTHO05D007217 1.2e-06 58.2 33 84.8
Gorai.009G032900 Gossypium raimondii HOM05D001717 ORTHO05D007217 1.2e-06 58.2 33 84.8
Sed0013443 Sechium edule HOM05D001717 ORTHO05D007217 1.2e-06 58.2 35 77.1
unitig_899.g15176 Utricularia gibba HOM05D001717 ORTHO05D007217 1.2e-06 58.2 35 80.0
Glyma.09G066200 Glycine max HOM05D001717 ORTHO05D007217 1.6e-06 57.8 35 77.1
Glyma.15G172200 Glycine max HOM05D001717 ORTHO05D007217 1.6e-06 57.8 35 77.1
HanXRQChr03g0060261 Helianthus annuus HOM05D001717 ORTHO05D007217 1.6e-06 57.8 38 73.7
Phvul.009G230300 Phaseolus vulgaris HOM05D001717 ORTHO05D007217 1.6e-06 57.8 35 77.1
VMungo1309G2997 Vigna mungo HOM05D001717 ORTHO05D007217 1.6e-06 57.8 35 77.1
BcaB01g04439 Brassica carinata HOM05D001717 ORTHO05D007217 2.1e-06 57.4 35 77.1
BcaB05g22312 Brassica carinata HOM05D001717 ORTHO05D007217 2.1e-06 57.4 35 77.1
BcaC01g06460 Brassica carinata HOM05D001717 ORTHO05D007217 2.1e-06 57.4 35 77.1
A03p13030 Brassica napus HOM05D001717 ORTHO05D007217 2.1e-06 57.4 35 77.1
C03p15210 Brassica napus HOM05D001717 ORTHO05D007217 2.1e-06 57.4 35 77.1
BolC3t13962H Brassica oleracea HOM05D001717 ORTHO05D007217 2.1e-06 57.4 35 77.1
BraA03t10613Z Brassica rapa HOM05D001717 ORTHO05D007217 2.1e-06 57.4 35 77.1
Ca_13129_v3 Cicer arietinum L. HOM05D001717 ORTHO05D007217 2.1e-06 57.4 35 77.1
Lsat_1_v5_gn_7_34600 Lactuca sativa HOM05D001717 ORTHO05D007217 2.1e-06 57.4 38 73.7
Medtr2g040060 Medicago truncatula HOM05D001717 ORTHO05D007217 2.1e-06 57.4 35 77.1
Psat1g140400 Pisum sativum HOM05D001717 ORTHO05D007217 2.1e-06 57.4 35 77.1
Hund08694 Selenicereus undatus HOM05D001717 ORTHO05D007217 2.1e-06 57.4 38 73.7
TPR.G29491 Trifolium pratense HOM05D001717 ORTHO05D007217 2.1e-06 57.4 35 77.1
ATR0716G023 Amborella trichopoda HOM05D001717 ORTHO05D007217 3.5e-06 56.6 35 77.1
CAN.G212.5 Capsicum annuum HOM05D001717 ORTHO05D022168 4.6e-06 56.2 35 74.3
ECA240G2539 Erigeron canadensis HOM05D001717 ORTHO05D007217 4.6e-06 56.2 38 71.1
Os01g0581300 Oryza sativa ssp. japonica HOM05D001717 ORTHO05D007217 4.6e-06 56.2 35 77.1
Zm00001eb357090 Zea mays HOM05D001717 ORTHO05D007217 4.6e-06 56.2 35 77.1
CAN.G276.10 Capsicum annuum HOM05D001717 ORTHO05D007217 7.9e-06 55.5 38 68.4
CAN.G366.3 Capsicum annuum HOM05D001717 ORTHO05D022168 7.9e-06 55.5 35 74.3
Gohir.D07G012200 Gossypium hirsutum HOM05D001717 ORTHO05D007217 7.9e-06 55.5 37 67.6
Rhsim02G0226700 Rhododendron simsii HOM05D001717 ORTHO05D022168 7.9e-06 55.5 38 76.3


User provided reference genes

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