Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_MTg0498571 Rosa chinensis HOM05D004291 ORTHO05D005620 2.7e-149 531.9 263 100.0
Psat3g172200 Pisum sativum HOM05D004291 ORTHO05D005620 2.0e-144 515.8 258 98.1
LjContig00315g0005528 Lotus japonicus HOM05D004291 ORTHO05D005620 1.6e-141 506.1 253 97.6
Lalb_Chr00c21g0405651 Lupinus albus HOM05D004291 ORTHO05D005620 2.1e-141 505.8 257 96.5
Lalb_Chr00c24g0407111 Lupinus albus HOM05D004291 ORTHO05D005620 2.1e-141 505.8 257 96.5
Lj5g0026615 Lotus japonicus HOM05D004291 ORTHO05D005620 2.7e-141 505.4 253 97.2
CsaV3_5G015800 Cucumis sativus L. HOM05D004291 ORTHO05D005620 7.3e-139 497.3 259 94.2
ATMG00160 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 3.1e-137 491.9 259 94.2
CARHR282690 Cardamine hirsuta HOM05D004291 ORTHO05D005620 9.0e-137 490.3 259 93.8
arahy.Tifrunner.gnm1.ann1.4JQ3QL Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-136 490.0 251 97.2
arahy.Tifrunner.gnm1.ann1.8KX3ZR Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-136 490.0 251 97.2
arahy.Tifrunner.gnm1.ann1.C5IA5B Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-136 490.0 251 97.2
arahy.Tifrunner.gnm1.ann1.E3XYYX Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-136 490.0 251 97.2
arahy.Tifrunner.gnm1.ann1.K8XT55 Arachis hypogaea HOM05D004291 ORTHO05D005620 1.2e-136 490.0 251 97.2
arahy.Tifrunner.gnm1.ann1.I3FVC7 Arachis hypogaea HOM05D004291 ORTHO05D005620 5.8e-136 487.6 249 97.2
CANSAT16G0053 Cannabis sativa HOM05D004291 ORTHO05D005620 6.4e-135 484.2 259 93.8
Ca_03780_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 6.4e-135 484.2 242 97.5
TPR.G581 Trifolium pratense HOM05D004291 ORTHO05D005620 6.4e-135 484.2 243 97.1
Ca_31296_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.1e-134 483.4 248 96.0
Nn1g09987 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.1e-134 483.4 259 94.2
DCAR_032452 Daucus carota HOM05D004291 ORTHO05D005620 7.9e-133 477.2 254 94.5
Thhalv10023011m.g Eutrema salsugineum HOM05D004291 ORTHO05D005620 3.0e-132 475.3 259 91.1
arahy.Tifrunner.gnm1.ann1.81GM5H Arachis hypogaea HOM05D004291 ORTHO05D005620 8.7e-132 473.8 239 97.5
arahy.Tifrunner.gnm1.ann1.86CJ1T Arachis hypogaea HOM05D004291 ORTHO05D005620 8.7e-132 473.8 239 97.5
arahy.Tifrunner.gnm1.ann1.5E6QYU Arachis hypogaea HOM05D004291 ORTHO05D005620 7.4e-131 470.7 237 97.5
arahy.Tifrunner.gnm1.ann1.JQU8UC Arachis hypogaea HOM05D004291 ORTHO05D005620 7.4e-131 470.7 237 97.5
LjContig00315g0005262 Lotus japonicus HOM05D004291 ORTHO05D005620 8.1e-130 467.2 253 92.1
arahy.Tifrunner.gnm1.ann1.NTK3LG Arachis hypogaea HOM05D004291 ORTHO05D005620 1.4e-129 466.5 237 97.0
RhsimMtG0001900 Rhododendron simsii HOM05D004291 ORTHO05D005620 7.6e-128 460.7 237 95.4
Gorai.001G161700 Gossypium raimondii HOM05D004291 ORTHO05D005620 4.9e-127 458.0 231 97.4
Medtr0212s0040 Medicago truncatula HOM05D000743 ORTHO05D000580 6.7e-124 447.6 253 90.9
Sed0009617 Sechium edule HOM05D004291 ORTHO05D005620 8.7e-124 447.2 231 94.8
A04p09440 Brassica napus HOM05D004291 ORTHO05D005620 5.8e-120 434.5 231 92.6
A04p09530 Brassica napus HOM05D004291 ORTHO05D005620 5.8e-120 434.5 231 92.6
BolSC28t60319H Brassica oleracea HOM05D004291 ORTHO05D005620 5.8e-120 434.5 231 92.6
BolSC28t60374H Brassica oleracea HOM05D004291 ORTHO05D005620 5.8e-120 434.5 231 92.6
BraSC48t46334Z Brassica rapa HOM05D004291 ORTHO05D005620 5.8e-120 434.5 231 92.6
BraSC54t46371Z Brassica rapa HOM05D004291 ORTHO05D005620 5.8e-120 434.5 231 92.6
BraSC54t46353Z Brassica rapa HOM05D004291 ORTHO05D005620 2.2e-119 432.6 230 92.6
BraSC48t46243Z Brassica rapa HOM05D004291 ORTHO05D005620 4.9e-119 431.4 232 92.7
Cfa021332 Carpinus fangiana HOM05D004291 ORTHO05D005620 1.9e-118 429.5 219 97.3
Sed0021216 Sechium edule HOM05D004291 ORTHO05D005620 2.1e-117 426.0 259 84.6
Glyma.09G040100 Glycine max HOM05D004291 ORTHO05D005620 3.5e-117 425.2 250 83.2
SGA_v2.0_scaffold245G44781 Striga asiatica HOM05D004291 ORTHO05D005620 1.6e-114 416.4 228 91.2
Sopen00g002770 Solanum pennellii HOM05D004291 ORTHO05D005620 8.2e-114 414.1 283 76.7
HanXRQMTg0579681 Helianthus annuus HOM05D004291 ORTHO05D005620 1.1e-113 413.7 284 76.4
Ah.10g028620 Amaranthus hybridus HOM05D004291 ORTHO05D005620 2.4e-113 412.5 279 76.7
Ah.10g028820 Amaranthus hybridus HOM05D004291 ORTHO05D005620 2.4e-113 412.5 279 76.7
VMungo1309G0827 Vigna mungo HOM05D004291 ORTHO05D005620 2.0e-112 409.5 257 79.8
Phvul.009G252600 Phaseolus vulgaris HOM05D004291 ORTHO05D005620 1.3e-111 406.8 254 79.1
Potri.007G061781 Populus trichocarpa HOM05D004291 ORTHO05D005620 1.3e-103 380.2 215 88.4
RcHm_v2.0_MTg0498241 Rosa chinensis HOM05D004291 ORTHO05D005620 1.4e-102 376.7 195 97.9
BraSC54t46377Z Brassica rapa HOM05D004291 ORTHO05D005620 4.2e-102 375.2 202 92.1
SabraMtG0008700 Salix brachista HOM05D004291 ORTHO05D005620 1.0e-100 370.5 206 89.3
Eucgr.I01856 Eucalyptus grandis HOM05D004291 ORTHO05D005620 1.8e-100 369.8 192 96.4
GSVIVG01006909001 Vitis vinifera HOM05D004291 ORTHO05D005620 3.9e-100 368.6 202 92.6
Migut.J01259 Erythranthe guttata HOM05D004291 ORTHO05D005620 3.0e-92 342.4 181 93.9
Hma1.2p1_0716F.1_g208050 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 1.6e-88 330.1 170 97.1
AL8G12400 Arabidopsis lyrata HOM05D004291 ORTHO05D005620 6.5e-79 298.1 160 93.1
Psat1g132320 Pisum sativum HOM05D004291 ORTHO05D007972 5.7e-75 285.0 175 80.6
Nn1g09999 Nelumbo nucifera HOM05D004291 ORTHO05D005620 7.7e-72 274.6 197 75.6
Nn1g10072 Nelumbo nucifera HOM05D004291 ORTHO05D005620 7.7e-72 274.6 197 75.6
CAN.G1173.2 Capsicum annuum HOM05D004291 ORTHO05D005620 1.4e-68 263.8 153 88.2
Sed0022989 Sechium edule HOM05D004291 ORTHO05D005620 3.4e-67 259.2 127 97.6
Dinv06711 Davidia involucrata HOM05D004291 ORTHO05D005620 3.1e-65 252.7 189 72.0
AUR62042349 Chenopodium quinoa HOM05D004291 ORTHO05D005620 5.6e-62 241.9 126 93.7
Solyc00g500310.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 7.3e-62 241.5 126 92.9
Solyc00g500101.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-61 240.7 126 92.9
Solyc00g500118.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-61 240.7 126 92.9
Solyc00g500244.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-61 240.7 126 92.9
Solyc00g500275.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-61 240.7 126 92.9
Solyc00g500359.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.2e-61 240.7 126 92.9
Lsat_1_v5_gn_4_50261 Lactuca sativa HOM05D004291 ORTHO05D005620 3.6e-61 239.2 126 92.9
AUR62001626 Chenopodium quinoa HOM05D004291 ORTHO05D005620 8.0e-61 238.0 126 92.1
unitig_87.g27941 Utricularia gibba HOM05D004291 ORTHO05D005620 8.0e-61 238.0 127 92.1
HanXRQChr04g0112911 Helianthus annuus HOM05D004291 ORTHO05D005620 1.0e-60 237.7 126 92.1
Psat0s4951g0120 Pisum sativum HOM05D004291 ORTHO05D005620 1.4e-60 237.3 137 87.6
Lsat_1_v5_gn_6_95140 Lactuca sativa HOM05D004291 ORTHO05D005620 4.9e-58 228.8 126 88.9
PGSC0003DMG401031302 Solanum tuberosum HOM05D004291 ORTHO05D005620 1.1e-57 227.6 120 90.8
Thecc.10G006300 Theobroma cacao HOM05D004291 ORTHO05D005620 1.6e-53 213.8 121 86.8
PGSC0003DMG400013864 Solanum tuberosum HOM05D004291 ORTHO05D005620 2.1e-53 213.4 114 90.4
Lalb_Chr24g0400601 Lupinus albus HOM05D004291 ORTHO05D005620 6.2e-53 211.8 110 93.6
Sopen00g002740 Solanum pennellii HOM05D004291 ORTHO05D005620 8.0e-53 211.5 111 91.0
SGA_v2.0_scaffold420G51405 Striga asiatica HOM05D004291 ORTHO05D005620 1.8e-52 210.3 132 80.3
CAN.G184.83 Capsicum annuum HOM05D004291 ORTHO05D005620 1.4e-49 200.7 114 85.1
SHI09335 Sapria himalayana HOM05D004291 ORTHO05D005620 4.1e-49 199.1 105 92.4
TAR022G0001 Trochodendron aralioides HOM05D004291 ORTHO05D005620 4.3e-46 189.1 139 64.7
AUR62042348 Chenopodium quinoa HOM05D004291 ORTHO05D005620 1.4e-44 184.1 96 93.8
Os04g0343050 Oryza sativa ssp. japonica HOM05D004291 ORTHO05D005620 6.8e-44 181.8 115 79.1
TAR371G1150 Trochodendron aralioides HOM05D004291 ORTHO05D005620 7.5e-43 178.3 106 86.8
arahy.Tifrunner.gnm1.ann1.8LYJ6L Arachis hypogaea HOM05D004291 ORTHO05D005620 1.7e-42 177.2 96 91.7
arahy.Tifrunner.gnm1.ann1.Y9PUBE Arachis hypogaea HOM05D004291 ORTHO05D005620 1.7e-42 177.2 96 91.7
Lsat_1_v5_gn_6_95160 Lactuca sativa HOM05D004291 ORTHO05D005620 4.9e-42 175.6 104 85.6
AT2G07695 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 6.4e-42 175.3 101 85.1
ATMG01280 Arabidopsis thaliana HOM05D004291 ORTHO05D005620 6.4e-42 175.3 101 85.1
CARHR283480 Cardamine hirsuta HOM05D004291 ORTHO05D005620 6.4e-42 175.3 101 85.1
Nn1g09996 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.9e-41 173.7 89 93.3
Nn1g10097 Nelumbo nucifera HOM05D004291 ORTHO05D005620 1.9e-41 173.7 89 93.3
Nitab4.5_0000309g0180 Nicotiana tabacum HOM05D001987 ORTHO05D005620 1.2e-40 171.0 105 79.0
Solyc09g015880.4 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.6e-40 170.6 93 86.0
BolSC28t60391H Brassica oleracea HOM05D004291 ORTHO05D005620 3.5e-40 169.5 84 96.4
Oeu042472.1 Olea europaea HOM05D004291 ORTHO05D005620 6.6e-39 165.2 117 67.5
Nitab4.5_0001819g0010 Nicotiana tabacum HOM05D004291 ORTHO05D005620 9.5e-38 161.4 92 82.6
CDE02G1233 Ceratophyllum demersum HOM05D004291 ORTHO05D005620 2.8e-37 159.8 87 89.7
CAN.G1897.5 Capsicum annuum HOM05D004291 ORTHO05D005620 3.6e-37 159.5 98 78.6
AUR62001625 Chenopodium quinoa HOM05D004291 ORTHO05D005620 5.8e-35 152.1 84 89.3
Nitab4.5_0000280g0210 Nicotiana tabacum HOM05D004291 ORTHO05D005620 9.9e-35 151.4 142 59.9
VMungo1309G2873 Vigna mungo HOM05D000045 ORTHO05D001346 9.9e-35 151.4 155 55.5
CAN.G8.27 Capsicum annuum HOM05D004291 ORTHO05D005620 9.2e-33 144.8 74 90.5
Lalb_Chr23g0276811 Lupinus albus HOM05D004291 ORTHO05D005620 6.0e-32 142.1 72 98.6
Cpa.g.sc555.1 Carica papaya HOM05D004291 ORTHO05D005620 7.8e-32 141.7 84 86.9
Ca_16076_v3 Cicer arietinum L. HOM05D004291 ORTHO05D005620 1.3e-31 141.0 72 93.1
Nitab4.5_0007876g0040 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.9e-30 137.1 103 67.0
Cre01.g049500 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 5.6e-30 135.6 105 59.0
Hma1.2p1_0716F.1_g208040 Hydrangea macrophylla HOM05D004291 ORTHO05D005620 9.6e-30 134.8 72 87.5
MELO3C030794.2 Cucumis melo HOM05D004291 ORTHO05D005620 2.1e-29 133.7 67 91.0
MBI05_g05354_MAGBIO Magnolia biondii HOM05D004291 ORTHO05D005620 1.2e-27 127.9 126 55.6
BraSC77t46631Z Brassica rapa HOM05D004291 ORTHO05D005620 4.4e-27 125.9 72 81.9
BraSC177t45746Z Brassica rapa HOM05D004291 ORTHO05D005620 5.8e-27 125.6 103 64.1
Solyc12g038985.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 5.8e-27 125.6 120 56.7
HanXRQMTg0579451 Helianthus annuus HOM05D004291 ORTHO05D005620 7.6e-27 125.2 126 60.3
Mapoly0041s0129 Marchantia polymorpha HOM05D004291 ORTHO05D005620 9.9e-27 124.8 76 76.3
Cre03.g154350 Chlamydomonas reinhardtii HOM05D004291 ORTHO05D005620 1.7e-26 124.0 125 46.4
Psat0s3560g0080 Pisum sativum HOM05D000533 ORTHO05D002807 1.7e-26 124.0 60 93.3
CAN.G390.18 Capsicum annuum HOM05D004291 ORTHO05D005620 4.2e-25 119.4 61 95.1
ATR0461G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 9.3e-25 118.2 61 95.1
SMO053G0014 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 1.2e-24 117.9 107 56.1
CAN.G15876.1 Capsicum annuum HOM05D004291 ORTHO05D005620 5.1e-23 112.5 80 61.2
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 5.1e-23 112.5 58 87.9
Solyc05g045870.2 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.9e-22 110.5 95 62.1
Haze_27535 Corylus avellana HOM05D004291 ORTHO05D005620 9.6e-22 108.2 200 36.0
Nitab4.5_0000007g0310 Nicotiana tabacum HOM05D004291 ORTHO05D005620 8.1e-21 105.1 70 71.4
Solyc05g045930.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 1.8e-20 104.0 126 50.0
ATR0513G001 Amborella trichopoda HOM05D004291 ORTHO05D005620 4.0e-20 102.8 54 90.7
Solyc05g045850.3 Solanum lycopersicum HOM05D004291 ORTHO05D005620 5.3e-20 102.4 61 83.6
CAN.G1449.6 Capsicum annuum HOM05D004291 ORTHO05D005620 1.2e-19 101.3 56 80.4
ATR0461G002 Amborella trichopoda HOM05D004291 ORTHO05D005620 4.2e-17 92.8 54 83.3
Solyc03g063780.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.1e-16 90.5 54 85.2
BraSC48t46285Z Brassica rapa HOM05D004291 ORTHO05D005620 1.0e-15 88.2 44 86.4
BolSC28t60389H Brassica oleracea HOM05D004291 ORTHO05D005620 8.7e-15 85.1 42 85.7
BolSC28t60408H Brassica oleracea HOM05D004291 ORTHO05D005620 8.7e-15 85.1 42 85.7
HanXRQChr00c0192g0572351 Helianthus annuus HOM05D004291 ORTHO05D005620 1.9e-14 84.0 71 66.2
Sabra01G0004500 Salix brachista HOM05D000521 ORTHO05D006286 5.6e-14 82.4 74 63.5
ClCG06G009310 Citrullus lanatus HOM05D004291 ORTHO05D005620 7.4e-14 82.0 44 84.1
Peaxi162Scf00268g01210 Petunia axillaris HOM05D004291 ORTHO05D005620 3.7e-13 79.7 98 48.0
SMO053G0010 Selaginella moellendorffii HOM05D004291 ORTHO05D005620 4.8e-13 79.3 110 46.4
PGSC0003DMG400020450 Solanum tuberosum HOM05D004291 ORTHO05D005620 1.4e-12 77.8 48 75.0
CAN.G687.3 Capsicum annuum HOM05D004291 ORTHO05D005620 2.4e-12 77.0 48 85.4
Solyc02g021365.1 Solanum lycopersicum HOM05D004291 ORTHO05D005620 2.4e-12 77.0 63 65.1
SHI33022 Sapria himalayana HOM05D004291 ORTHO05D005620 9.0e-12 75.1 52 76.9
Peaxi162Scf00187g00115 Petunia axillaris HOM05D004291 ORTHO05D005620 2.0e-11 73.9 44 79.5
SHI06816 Sapria himalayana HOM05D004291 ORTHO05D005620 4.9e-10 69.3 67 55.2
CAN.G505.7 Capsicum annuum HOM05D004537 ORTHO05D005492 8.4e-10 68.6 49 65.3
CAN.G595.5 Capsicum annuum HOM05D004291 ORTHO05D005620 5.5e-09 65.9 49 67.3
SHI04268 Sapria himalayana HOM05D001960 ORTHO05D004348 9.3e-09 65.1 58 56.9
Nitab4.5_0000216g0120 Nicotiana tabacum HOM05D004291 ORTHO05D005620 1.2e-08 64.7 29 93.1
SHI08953 Sapria himalayana HOM05D004291 ORTHO05D005620 4.6e-08 62.8 156 32.1
Mapoly0007s0023 Marchantia polymorpha HOM05D004291 ORTHO05D005620 1.8e-07 60.8 49 63.3
Sc08g0004800 Simmondsia chinensis HOM05D004291 ORTHO05D005620 1.8e-07 60.8 47 68.1
CAN.G889.6 Capsicum annuum HOM05D004537 ORTHO05D005492 4.3e-06 56.2 36 75.0


User provided reference genes

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