Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0228461 Rosa chinensis HOM05D003906 ORTHO05D004776 1.1e-141 506.5 249 100.0
FAN18G2269 Fragaria x ananassa HOM05D003906 ORTHO05D004776 4.7e-111 404.8 246 82.9
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 1.0e-110 403.7 248 83.1
FvH4_5g32270 Fragaria vesca HOM05D003906 ORTHO05D004776 7.5e-109 397.5 221 87.8
MD15G1410300 Malus domestica HOM05D003906 ORTHO05D004776 9.2e-107 390.6 245 79.2
Prupe.1G552200 Prunus persica HOM05D003906 ORTHO05D004776 2.9e-105 385.6 216 85.2
FAN04G2445 Fragaria x ananassa HOM05D003906 ORTHO05D004776 5.4e-99 364.8 210 84.3
FAN13G2487 Fragaria x ananassa HOM05D003906 ORTHO05D004776 3.0e-97 359.0 208 85.6
CsaV3_5G040450 Cucumis sativus L. HOM05D003906 ORTHO05D004776 2.5e-96 355.9 219 78.1
MELO3C022219.2 Cucumis melo HOM05D003906 ORTHO05D004776 1.6e-95 353.2 219 77.6
Atru.chr2.1825 Acer truncatum HOM05D003906 ORTHO05D004776 1.5e-93 346.7 203 81.3
PGR042G0234 Punica granatum HOM05D003906 ORTHO05D004776 7.5e-93 344.4 225 73.8
MD08G1220100 Malus domestica HOM05D003906 ORTHO05D004776 1.3e-92 343.6 203 80.8
Gohir.A09G115500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 2.2e-92 342.8 229 74.2
Gohir.D09G112300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 4.9e-92 341.7 229 74.2
Thecc.08G187700 Theobroma cacao HOM05D003906 ORTHO05D004776 8.3e-92 340.9 218 75.7
CiPaw.08G001800 Carya illinoinensis HOM05D003906 ORTHO05D004776 1.9e-91 339.7 220 75.0
Ciclev10001078m.g Citrus clementina HOM05D003906 ORTHO05D004776 2.4e-91 339.3 225 74.7
Gorai.006G130100 Gossypium raimondii HOM05D003906 ORTHO05D004776 4.1e-91 338.6 229 73.4
Gorai.009G264700 Gossypium raimondii HOM05D003906 ORTHO05D004776 1.2e-90 337.0 207 76.3
THA.LOC104816477 Tarenaya hassleriana HOM05D003906 ORTHO05D004776 1.6e-90 336.7 222 74.3
Eucgr.F02579 Eucalyptus grandis HOM05D003906 ORTHO05D004776 3.5e-90 335.5 221 72.4
Manes.02G196200 Manihot esculenta HOM05D003906 ORTHO05D004776 4.6e-90 335.1 225 72.4
TWI59G1118 Tripterygium wilfordii HOM05D003906 ORTHO05D004776 1.3e-89 333.6 198 78.3
Duzib177G0129 Durio zibethinus HOM05D003906 ORTHO05D004776 2.3e-89 332.8 229 71.6
Gohir.D05G252500 Gossypium hirsutum HOM05D003906 ORTHO05D004776 3.0e-89 332.4 228 71.1
Gohir.A05G251300 Gossypium hirsutum HOM05D003906 ORTHO05D004776 3.9e-89 332.0 229 70.3
arahy.Tifrunner.gnm1.ann1.AC170Q Arachis hypogaea HOM05D003906 ORTHO05D004776 1.1e-88 330.5 203 75.9
arahy.Tifrunner.gnm1.ann1.NDRV14 Arachis hypogaea HOM05D003906 ORTHO05D004776 1.1e-88 330.5 203 75.9
AL1G50340 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 1.9e-88 329.7 241 66.8
AT1G35470 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 1.9e-88 329.7 225 71.6
Medtr4g032800 Medicago truncatula HOM05D003906 ORTHO05D004776 4.3e-88 328.6 225 70.7
Carub.0001s3308 Capsella rubella HOM05D003906 ORTHO05D004776 2.1e-87 326.2 203 74.9
Thhalv10001818m.g Eutrema salsugineum HOM05D003906 ORTHO05D004776 2.1e-87 326.2 216 72.2
Sed0011736 Sechium edule HOM05D003906 ORTHO05D004776 2.1e-87 326.2 206 77.2
Actinidia23018 Actinidia chinensis HOM05D003906 ORTHO05D004776 2.8e-87 325.9 202 75.2
COL.COLO4_24795 Corchorus olitorius HOM05D003906 ORTHO05D004776 3.6e-87 325.5 231 69.7
Lj3g0000257 Lotus japonicus HOM05D003906 ORTHO05D004776 8.1e-87 324.3 206 75.7
Rhsim06G0114100 Rhododendron simsii HOM05D003906 ORTHO05D004776 1.1e-86 323.9 202 76.7
BcaB07g33091 Brassica carinata HOM05D003906 ORTHO05D004776 1.4e-86 323.6 217 72.4
QL02p025746 Quercus lobata HOM05D003906 ORTHO05D004776 1.8e-86 323.2 216 71.3
TAR628G0992 Trochodendron aralioides HOM05D003906 ORTHO05D004776 2.3e-86 322.8 207 75.8
Psat7g226120 Pisum sativum HOM05D003906 ORTHO05D004776 4.0e-86 322.0 220 70.9
Dinv41741 Davidia involucrata HOM05D003906 ORTHO05D004776 5.2e-86 321.6 207 73.9
CARHR034240 Cardamine hirsuta HOM05D003906 ORTHO05D004776 2.0e-85 319.7 215 68.4
Dinv04083 Davidia involucrata HOM05D003906 ORTHO05D004776 2.6e-85 319.3 206 73.3
Hund16785 Selenicereus undatus HOM05D003906 ORTHO05D004776 4.4e-85 318.5 211 72.5
Aa31LG6G8750 Aethionema arabicum HOM05D003906 ORTHO05D004776 5.8e-85 318.2 181 79.6
CSS0022245 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 7.5e-85 317.8 208 73.1
CSS0049725 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 7.5e-85 317.8 208 73.1
BcaC08g43739 Brassica carinata HOM05D003906 ORTHO05D004776 1.3e-84 317.0 222 70.3
BolC6t36252H Brassica oleracea HOM05D003906 ORTHO05D004776 1.3e-84 317.0 222 70.3
Ca_19699_v3 Cicer arietinum L. HOM05D003906 ORTHO05D004776 1.3e-84 317.0 222 68.5
VMungo1127G1719 Vigna mungo HOM05D003906 ORTHO05D004776 1.7e-84 316.6 221 68.8
A09p31780 Brassica napus HOM05D003906 ORTHO05D004776 2.2e-84 316.2 222 70.3
Phvul.011G000900 Phaseolus vulgaris HOM05D003906 ORTHO05D004776 2.2e-84 316.2 221 68.8
C06p11170 Brassica napus HOM05D003906 ORTHO05D004776 2.9e-84 315.8 222 69.8
Manes.18G104100 Manihot esculenta HOM05D003906 ORTHO05D004776 3.7e-84 315.5 227 69.2
Hma1.2p1_0342F.1_g130710 Hydrangea macrophylla HOM05D003906 ORTHO05D004776 4.9e-84 315.1 202 72.8
BraA09t38715Z Brassica rapa HOM05D003906 ORTHO05D004776 1.1e-83 313.9 222 69.8
Nn5g27566 Nelumbo nucifera HOM05D003906 ORTHO05D004776 1.1e-83 313.9 182 79.1
TPR.G34173 Trifolium pratense HOM05D003906 ORTHO05D004776 1.1e-83 313.9 225 67.6
Glyma.08G238500 Glycine max HOM05D003906 ORTHO05D004776 1.9e-83 313.2 216 69.9
Sp1g30230 Schrenkiella parvula HOM05D003906 ORTHO05D004776 1.9e-83 313.2 215 70.2
Peaxi162Scf00076g00225 Petunia axillaris HOM05D003906 ORTHO05D004776 2.4e-83 312.8 204 71.6
Glyma.12G000900 Glycine max HOM05D003906 ORTHO05D004776 3.2e-83 312.4 216 69.9
Sabra13G0093600 Salix brachista HOM05D003906 ORTHO05D004776 3.2e-83 312.4 234 67.1
Aqoxy5G02955 Aquilegia oxysepala HOM05D003906 ORTHO05D004776 7.1e-83 311.2 182 79.1
MBI06_g32171_MAGBIO Magnolia biondii HOM05D003906 ORTHO05D004776 9.2e-83 310.8 200 75.0
Cfa012932 Carpinus fangiana HOM05D003906 ORTHO05D000991 1.6e-82 310.1 173 82.7
PSO170G2127 Papaver somniferum HOM05D003906 ORTHO05D004776 3.5e-82 308.9 181 77.9
A05p23780 Brassica napus HOM05D003906 ORTHO05D004776 6.0e-82 308.1 227 66.5
BraA05t21248Z Brassica rapa HOM05D003906 ORTHO05D004776 6.0e-82 308.1 227 66.5
Haze_21286 Corylus avellana HOM05D003906 ORTHO05D004776 7.8e-82 307.8 190 75.3
BolC5t32471H Brassica oleracea HOM05D003906 ORTHO05D004776 1.0e-81 307.4 228 66.2
Nitab4.5_0009321g0030 Nicotiana tabacum HOM05D003906 ORTHO05D004776 1.0e-81 307.4 240 65.4
SalBow7G1596 Salvia bowleyana HOM05D003906 ORTHO05D004776 1.0e-81 307.4 227 67.4
unitig_749.g13881 Utricularia gibba HOM05D003906 ORTHO05D004776 2.3e-81 306.2 213 70.4
Nitab4.5_0000130g0080 Nicotiana tabacum HOM05D003906 ORTHO05D004776 3.9e-81 305.4 240 64.6
BcaC05g27736 Brassica carinata HOM05D003906 ORTHO05D004776 6.6e-81 304.7 227 64.8
C05p37240 Brassica napus HOM05D003906 ORTHO05D004776 6.6e-81 304.7 227 64.8
PSO017G0948 Papaver somniferum HOM05D003906 ORTHO05D004776 8.6e-81 304.3 180 77.8
ECA247G1339 Erigeron canadensis HOM05D003906 ORTHO05D004776 2.5e-80 302.8 223 65.5
BcaB03g13663 Brassica carinata HOM05D003906 ORTHO05D004776 7.3e-80 301.2 225 64.4
Cc10_g10260 Coffea canephora HOM05D003906 ORTHO05D004776 1.6e-79 300.1 181 77.3
Lsat_1_v5_gn_1_12460 Lactuca sativa HOM05D003906 ORTHO05D004776 2.1e-79 299.7 182 78.0
DCAR_001451 Daucus carota HOM05D003906 ORTHO05D004776 2.8e-79 299.3 202 71.3
Solyc03g033380.3 Solanum lycopersicum HOM05D003906 ORTHO05D004776 2.8e-79 299.3 243 63.0
CSS0005180 Camellia sinensis var. sinensis HOM05D003906 ORTHO05D004776 1.1e-78 297.4 173 79.2
Sopen03g006150 Solanum pennellii HOM05D003906 ORTHO05D004776 2.4e-78 296.2 240 62.9
Sp6g08200 Schrenkiella parvula HOM05D003906 ORTHO05D004776 6.8e-78 294.7 181 71.8
Ah.05g178390 Amaranthus hybridus HOM05D003906 ORTHO05D004776 8.9e-78 294.3 208 68.3
CAN.G354.51 Capsicum annuum HOM05D003906 ORTHO05D004776 8.9e-78 294.3 190 71.6
Lj4C483G1 Lonicera japonica HOM05D003906 ORTHO05D004776 8.9e-78 294.3 189 75.1
Potri.013G108400 Populus trichocarpa HOM05D003906 ORTHO05D004776 1.5e-77 293.5 225 65.3
HanXRQChr04g0109631 Helianthus annuus HOM05D003906 ORTHO05D004776 4.4e-77 292.0 224 64.7
C03p34490 Brassica napus HOM05D003906 ORTHO05D004776 1.7e-76 290.0 197 67.5
BraA03t12055Z Brassica rapa HOM05D003906 ORTHO05D004776 1.7e-76 290.0 197 67.5
A03p28530 Brassica napus HOM05D003906 ORTHO05D004776 2.2e-76 289.7 197 67.5
BolC3t15761H Brassica oleracea HOM05D003906 ORTHO05D004776 2.2e-76 289.7 197 68.0
AL6G42970 Arabidopsis lyrata HOM05D003906 ORTHO05D004776 4.9e-76 288.5 181 69.6
AT4G09340 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 6.4e-76 288.1 181 70.7
Lalb_Chr01g0000071 Lupinus albus HOM05D003906 ORTHO05D004776 6.4e-76 288.1 219 64.8
BcaB01g02792 Brassica carinata HOM05D003906 ORTHO05D004776 8.4e-76 287.7 184 70.7
BcaC01g04722 Brassica carinata HOM05D003906 ORTHO05D004776 8.4e-76 287.7 183 71.6
Carub.0006s2784 Capsella rubella HOM05D003906 ORTHO05D004776 1.9e-75 286.6 198 66.7
Os02g0556600 Oryza sativa ssp. japonica HOM05D003906 ORTHO05D004776 1.9e-75 286.6 180 72.8
CARHR260350 Cardamine hirsuta HOM05D003906 ORTHO05D004776 3.2e-75 285.8 184 67.9
EL10Ac1g00112 Beta vulgaris HOM05D003906 ORTHO05D004776 4.1e-75 285.4 186 73.1
AUR62004621 Chenopodium quinoa HOM05D003906 ORTHO05D004776 1.6e-74 283.5 184 72.3
Migut.C01295 Erythranthe guttata HOM05D003906 ORTHO05D004776 2.7e-74 282.7 226 62.8
SGA_v2.0_scaffold24G10576 Striga asiatica HOM05D003906 ORTHO05D004776 6.0e-74 281.6 259 57.1
Zm00001eb243840 Zea mays HOM05D003906 ORTHO05D004776 1.0e-73 280.8 183 71.0
Duzib116G0916 Durio zibethinus HOM05D003906 ORTHO05D004776 6.6e-73 278.1 217 65.4
CDE08G1205 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 8.7e-73 277.7 205 64.4
Zm00001eb182000 Zea mays HOM05D003906 ORTHO05D004776 1.5e-72 276.9 180 71.1
CDE02G3748 Ceratophyllum demersum HOM05D003906 ORTHO05D004776 3.3e-72 275.8 205 63.9
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 9.6e-72 274.2 232 62.1
MSTRG.1555 Avicennia marina HOM05D003906 ORTHO05D004776 4.7e-71 271.9 226 62.4
Oeu051791.1 Olea europaea HOM05D003906 ORTHO05D004776 3.1e-70 269.2 195 66.2
ATR1136G046 Amborella trichopoda HOM05D003906 ORTHO05D004776 4.0e-70 268.9 182 70.3
Oeu064077.1 Olea europaea HOM05D003906 ORTHO05D004776 4.0e-70 268.9 189 67.2
AUR62023516 Chenopodium quinoa HOM05D003906 ORTHO05D004776 3.4e-69 265.8 174 71.8
HPP92_001193 Vanilla planifolia HOM05D003906 ORTHO05D004776 1.7e-68 263.5 179 67.0
Mapoly0002s0237 Marchantia polymorpha HOM05D003906 ORTHO05D004776 3.2e-67 259.2 186 65.1
GSVIVG01001786001 Vitis vinifera HOM05D003906 ORTHO05D004776 7.1e-67 258.1 147 81.6
SabraUnG0004400 Salix brachista HOM05D003906 ORTHO05D004776 1.2e-66 257.3 232 60.3
SHI26286 Sapria himalayana HOM05D003906 ORTHO05D004776 1.2e-66 257.3 344 44.2
Pp3c25_15350 Physcomitrium patens HOM05D003906 ORTHO05D004776 9.3e-59 231.1 181 61.3
Pp3c16_23970 Physcomitrium patens HOM05D003906 ORTHO05D004776 7.9e-58 228.0 203 55.7
SMO236G0134 Selaginella moellendorffii HOM05D003906 ORTHO05D004776 2.5e-56 223.0 182 59.3
Cre09.g387801 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 3.4e-45 186.0 178 50.6
vmacro12471 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 2.3e-41 173.3 95 82.1
Cpa.g.c39095 Carica papaya HOM05D003906 ORTHO05D004776 3.3e-40 169.5 117 70.9
Sc23g0001390 Simmondsia chinensis HOM05D003906 ORTHO05D004776 3.7e-39 166.0 93 80.6
PRCOL_00002342 Prasinoderma coloniale HOM05D003906 ORTHO05D004776 4.8e-39 165.6 166 47.0
vmacro12470 Vaccinium macrocarpon HOM05D003906 ORTHO05D004776 1.1e-38 164.5 123 68.3
Potri.019G080800 Populus trichocarpa HOM05D003906 ORTHO05D004776 1.8e-38 163.7 93 78.5
AT4G09200 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 5.3e-38 162.2 186 46.8
AT4G09250 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 5.3e-38 162.2 186 46.8
AT4G09310 Arabidopsis thaliana HOM05D003906 ORTHO05D004776 5.3e-38 162.2 186 46.8
A03p28510 Brassica napus HOM05D003906 ORTHO05D004776 7.2e-35 151.8 190 44.2
BolC3t15755H Brassica oleracea HOM05D003906 ORTHO05D004776 3.9e-33 146.0 179 44.7
BcaB01g02795 Brassica carinata HOM05D003906 ORTHO05D004776 2.5e-32 143.3 196 40.3
C03p34460 Brassica napus HOM05D003906 ORTHO05D004776 1.3e-31 141.0 185 42.2
AagrBONN_evm.TU.Sc2ySwM_228.4865 Anthoceros agrestis HOM05D003906 ORTHO05D011031 1.1e-30 137.9 174 42.5
SEGI_19081 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 1.1e-30 137.9 126 50.8
AagrBONN_evm.TU.Sc2ySwM_369.175 Anthoceros agrestis HOM05D003906 ORTHO05D004776 2.0e-29 133.7 174 40.2
AagrBONN_evm.TU.Sc2ySwM_362.2414 Anthoceros agrestis HOM05D007564 ORTHO05D009975 2.2e-28 130.2 174 39.7
unitig_32.g11182 Utricularia gibba HOM05D000008 ORTHO05D000005 2.9e-28 129.8 186 39.8
SEGI_28086 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 3.8e-28 129.4 94 63.8
Pp3c19_1530 Physcomitrium patens HOM05D003906 ORTHO05D004776 9.4e-27 124.8 182 36.3
SEGI_33732 Sequoiadendron giganteum HOM05D003906 ORTHO05D004776 3.9e-25 119.4 93 53.8
MCO01G564 Micromonas commoda HOM05D003906 ORTHO05D004776 9.7e-24 114.8 159 37.7
Cfa023121 Carpinus fangiana HOM05D003906 ORTHO05D004776 2.8e-23 113.2 187 31.6
DCAR_028625 Daucus carota HOM05D003906 ORTHO05D004776 2.8e-23 113.2 70 74.3
CBR_g30766 Chara braunii HOM05D000019 ORTHO05D000048 4.8e-23 112.5 137 40.9
Cre01.g007150 Chlamydomonas reinhardtii HOM05D003906 ORTHO05D004776 8.2e-23 111.7 182 31.9
Migut.C00143 Erythranthe guttata HOM05D003906 ORTHO05D004776 2.2e-20 103.6 169 37.9
BcaC01g04724 Brassica carinata HOM05D003906 ORTHO05D004776 8.2e-15 85.1 153 35.3
Sed0013629 Sechium edule HOM05D003906 ORTHO05D004776 1.7e-07 60.8 119 35.3


User provided reference genes

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