Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0227161 Rosa chinensis HOM05D005016 ORTHO05D005740 6.8e-57 223.8 115 100.0
Prupe.6G323600 Prunus persica HOM05D005016 ORTHO05D005740 8.7e-28 127.1 90 74.4
RcHm_v2.0_Chr3g0455221 Rosa chinensis HOM05D005016 ORTHO05D005740 1.9e-27 125.9 94 71.3
FvH4_6g06200 Fragaria vesca HOM05D005016 ORTHO05D005740 2.1e-26 122.5 90 70.0
MD12G1217300 Malus domestica HOM05D005016 ORTHO05D005740 3.1e-25 118.6 92 68.5
FAN09G3795 Fragaria x ananassa HOM05D005016 ORTHO05D005740 4.1e-25 118.2 91 67.0
Sed0001919 Sechium edule HOM05D005016 ORTHO05D005740 1.5e-24 116.3 89 68.5
CiPaw.07G019300 Carya illinoinensis HOM05D005016 ORTHO05D005740 5.9e-24 114.4 90 66.7
PGR102G1806 Punica granatum HOM05D005016 ORTHO05D005740 5.9e-24 114.4 88 68.2
Gohir.A11G266100 Gossypium hirsutum HOM05D005016 ORTHO05D005740 7.6e-24 114.0 90 65.6
CANSAT54G1439 Cannabis sativa HOM05D005016 ORTHO05D005740 1.0e-23 113.6 91 67.0
Gorai.007G298500 Gossypium raimondii HOM05D005016 ORTHO05D005740 1.3e-23 113.2 115 58.3
Potri.005G027700 Populus trichocarpa HOM05D005016 ORTHO05D005740 1.3e-23 113.2 88 63.6
CsaV3_6G042870 Cucumis sativus L. HOM05D005016 ORTHO05D005740 1.7e-23 112.8 89 67.4
FAN02G4356 Fragaria x ananassa HOM05D005016 ORTHO05D005740 1.7e-23 112.8 90 65.6
QL03p007603 Quercus lobata HOM05D005016 ORTHO05D005740 2.2e-23 112.5 90 64.4
Thecc.05G310100 Theobroma cacao HOM05D005016 ORTHO05D005740 2.9e-23 112.1 90 64.4
Gohir.D11G276400 Gossypium hirsutum HOM05D005016 ORTHO05D005740 6.5e-23 110.9 90 64.4
TAR633G2288 Trochodendron aralioides HOM05D005016 ORTHO05D005740 6.5e-23 110.9 91 65.9
GSVIVG01031086001 Vitis vinifera HOM05D005016 ORTHO05D005740 6.5e-23 110.9 93 64.5
MELO3C007526.2 Cucumis melo HOM05D005016 ORTHO05D005740 1.1e-22 110.2 89 65.2
Duzib177G0724 Durio zibethinus HOM05D005016 ORTHO05D005740 1.4e-22 109.8 90 64.4
TWI18G0619 Tripterygium wilfordii HOM05D005016 ORTHO05D005740 1.9e-22 109.4 92 64.1
Lj5g0018596 Lotus japonicus HOM05D005016 ORTHO05D005740 2.5e-22 109.0 89 64.0
Cpa.g.sc28.137 Carica papaya HOM05D005016 ORTHO05D005740 3.2e-22 108.6 89 62.9
CiPaw.08G163500 Carya illinoinensis HOM05D005016 ORTHO05D005740 3.2e-22 108.6 90 64.4
FAN14G2756 Fragaria x ananassa HOM05D005016 ORTHO05D005740 3.2e-22 108.6 102 60.8
VMungo0720G0219 Vigna mungo HOM05D005016 ORTHO05D005740 3.2e-22 108.6 91 67.0
Manes.09G168600 Manihot esculenta HOM05D005016 ORTHO05D005740 4.2e-22 108.2 91 64.8
MSTRG.6641 Avicennia marina HOM05D005016 ORTHO05D005740 7.2e-22 107.5 88 64.8
Lalb_Chr02g0155631 Lupinus albus HOM05D005016 ORTHO05D005740 7.2e-22 107.5 91 61.5
Glyma.06G164600 Glycine max HOM05D005016 ORTHO05D005740 1.2e-21 106.7 100 62.0
MBI16_g23767_MAGBIO Magnolia biondii HOM05D005016 ORTHO05D005740 1.6e-21 106.3 91 61.5
QL03p007589 Quercus lobata HOM05D005016 ORTHO05D005740 1.6e-21 106.3 86 64.0
QL03p012886 Quercus lobata HOM05D005016 ORTHO05D005740 1.6e-21 106.3 86 64.0
Eucgr.B01853 Eucalyptus grandis HOM05D005016 ORTHO05D005740 2.1e-21 105.9 93 61.3
Nn4g24543 Nelumbo nucifera HOM05D005016 ORTHO05D005740 2.1e-21 105.9 89 62.9
TPR.G6101 Trifolium pratense HOM05D005016 ORTHO05D005740 2.1e-21 105.9 90 62.2
Eucgr.B01941 Eucalyptus grandis HOM05D005016 ORTHO05D005740 2.7e-21 105.5 93 61.3
COL.COLO4_10485 Corchorus olitorius HOM05D005016 ORTHO05D005740 3.5e-21 105.1 90 63.3
ATR0053G060 Amborella trichopoda HOM05D005016 ORTHO05D005740 4.6e-21 104.8 88 61.4
Nitab4.5_0002144g0050 Nicotiana tabacum HOM05D005016 ORTHO05D005740 4.6e-21 104.8 87 64.4
PSO170G0092 Papaver somniferum HOM05D005016 ORTHO05D005740 4.6e-21 104.8 90 63.3
PSO541G5136 Papaver somniferum HOM05D005016 ORTHO05D005740 4.6e-21 104.8 89 64.0
Nitab4.5_0003830g0020 Nicotiana tabacum HOM05D005016 ORTHO05D005740 7.9e-21 104.0 87 64.4
Medtr1g083060 Medicago truncatula HOM05D005016 ORTHO05D005740 1.0e-20 103.6 92 59.8
PSO675G5142 Papaver somniferum HOM05D005016 ORTHO05D005740 3.9e-20 101.7 89 62.9
AUR62000803 Chenopodium quinoa HOM05D005016 ORTHO05D005740 5.1e-20 101.3 89 59.6
Migut.M00036 Erythranthe guttata HOM05D005016 ORTHO05D005740 6.7e-20 100.9 94 57.4
Solyc04g072880.3 Solanum lycopersicum HOM05D005016 ORTHO05D005740 6.7e-20 100.9 91 58.2
Actinidia03321 Actinidia chinensis HOM05D005016 ORTHO05D005740 8.7e-20 100.5 91 57.1
ClCG01G016560 Citrullus lanatus HOM05D005016 ORTHO05D005740 8.7e-20 100.5 99 58.6
PGSC0003DMG400009473 Solanum tuberosum HOM05D005016 ORTHO05D005740 8.7e-20 100.5 91 58.2
Sopen04g029030 Solanum pennellii HOM05D005016 ORTHO05D005740 1.1e-19 100.1 91 58.2
arahy.Tifrunner.gnm1.ann1.IT2BBU Arachis hypogaea HOM05D005016 ORTHO05D005740 1.5e-19 99.8 87 57.5
AUR62005165 Chenopodium quinoa HOM05D005016 ORTHO05D005740 1.5e-19 99.8 89 59.6
BcaC03g17793 Brassica carinata HOM05D001965 ORTHO05D005740 1.9e-19 99.4 90 62.2
Thhalv10004554m.g Eutrema salsugineum HOM05D005016 ORTHO05D005740 1.9e-19 99.4 90 58.9
Os03g0737600 Oryza sativa ssp. japonica HOM05D005016 ORTHO05D005740 1.9e-19 99.4 89 52.8
Sp2g20780 Schrenkiella parvula HOM05D005016 ORTHO05D005740 1.9e-19 99.4 90 61.1
AL6G39410 Arabidopsis lyrata HOM05D005016 ORTHO05D005740 2.5e-19 99.0 90 61.1
Hma1.2p1_0268F.1_g107630 Hydrangea macrophylla HOM05D005016 ORTHO05D005740 2.5e-19 99.0 95 56.8
DCAR_002182 Daucus carota HOM05D005016 ORTHO05D005740 4.3e-19 98.2 89 59.6
Ca_10118_v3 Cicer arietinum L. HOM05D005016 ORTHO05D005740 5.7e-19 97.8 90 57.8
HPP92_024286 Vanilla planifolia HOM05D005016 ORTHO05D005740 5.7e-19 97.8 93 57.0
AT5G27620 Arabidopsis thaliana HOM05D005016 ORTHO05D005740 7.4e-19 97.4 90 60.0
C02p58190 Brassica napus HOM05D001965 ORTHO05D005740 7.4e-19 97.4 87 62.1
BolC2t11886H Brassica oleracea HOM05D001965 ORTHO05D005740 7.4e-19 97.4 90 60.0
Psat0s2745g0240 Pisum sativum HOM05D005016 ORTHO05D005740 9.7e-19 97.1 91 58.2
BraA02t08844Z Brassica rapa HOM05D001965 ORTHO05D005740 1.3e-18 96.7 87 62.1
THA.LOC104818706 Tarenaya hassleriana HOM05D005016 ORTHO05D005740 1.3e-18 96.7 90 62.2
HPP92_024312 Vanilla planifolia HOM05D005016 ORTHO05D005740 1.3e-18 96.7 93 57.0
A02p38680 Brassica napus HOM05D001965 ORTHO05D005740 1.6e-18 96.3 87 62.1
CSS0007157 Camellia sinensis var. sinensis HOM05D005016 ORTHO05D005740 1.6e-18 96.3 91 56.0
CSS0032285 Camellia sinensis var. sinensis HOM05D005016 ORTHO05D005740 1.6e-18 96.3 91 56.0
CARHR186150 Cardamine hirsuta HOM05D005016 ORTHO05D005740 2.2e-18 95.9 88 60.2
Ciclev10001764m.g Citrus clementina HOM05D005016 ORTHO05D005740 2.2e-18 95.9 99 56.6
Sopen01g042860 Solanum pennellii HOM05D005016 ORTHO05D005740 2.2e-18 95.9 91 56.0
Haze_04172 Corylus avellana HOM05D005016 ORTHO05D005740 2.8e-18 95.5 84 59.5
Peaxi162Scf00235g00215 Petunia axillaris HOM05D005016 ORTHO05D005740 2.8e-18 95.5 111 50.5
Sc09g0003080 Simmondsia chinensis HOM05D005016 ORTHO05D005740 2.8e-18 95.5 89 57.3
CAN.G1034.54 Capsicum annuum HOM05D005016 ORTHO05D005740 3.7e-18 95.1 87 57.5
Solyc01g099310.4 Solanum lycopersicum HOM05D005016 ORTHO05D005740 3.7e-18 95.1 91 54.9
SGA_v2.0_scaffold73G24502 Striga asiatica HOM05D005016 ORTHO05D005740 3.7e-18 95.1 89 56.2
Aa31LG11G9370 Aethionema arabicum HOM05D001965 ORTHO05D005740 4.8e-18 94.7 87 60.9
Cc02_g33260 Coffea canephora HOM05D005016 ORTHO05D005740 4.8e-18 94.7 90 56.7
BraA09t36174Z Brassica rapa HOM05D005016 ORTHO05D005740 6.3e-18 94.4 85 60.0
Carub.0006s2497 Capsella rubella HOM05D005016 ORTHO05D005740 8.2e-18 94.0 89 57.3
Mapoly0001s0195 Marchantia polymorpha HOM05D005016 ORTHO05D005740 8.2e-18 94.0 89 56.2
arahy.Tifrunner.gnm1.ann1.16ZACY Arachis hypogaea HOM05D005016 ORTHO05D005740 1.1e-17 93.6 85 56.5
Hund07082 Selenicereus undatus HOM05D005016 ORTHO05D005740 1.1e-17 93.6 89 56.2
Zm00001eb056480 Zea mays HOM05D005016 ORTHO05D005740 1.4e-17 93.2 89 52.8
Ah.04g160380 Amaranthus hybridus HOM05D005016 ORTHO05D005740 1.8e-17 92.8 89 56.2
Aqoxy5G00653 Aquilegia oxysepala HOM05D005016 ORTHO05D005628 1.8e-17 92.8 82 59.8
A09p05360 Brassica napus HOM05D005016 ORTHO05D005740 1.8e-17 92.8 84 59.5
Rhsim05G0222800 Rhododendron simsii HOM05D005016 ORTHO05D005740 1.8e-17 92.8 91 57.1
SalBow7G0803 Salvia bowleyana HOM05D005016 ORTHO05D005740 1.8e-17 92.8 85 56.5
Dinv09444 Davidia involucrata HOM05D005016 ORTHO05D005740 3.1e-17 92.0 89 58.4
Lsat_1_v5_gn_8_67801 Lactuca sativa HOM05D005016 ORTHO05D005740 3.1e-17 92.0 118 48.3
Mapoly0138s0006 Marchantia polymorpha HOM05D005016 ORTHO05D005740 3.1e-17 92.0 89 55.1
A06p37400 Brassica napus HOM05D001965 ORTHO05D002112 4.1e-17 91.7 93 58.1
BraA06t26664Z Brassica rapa HOM05D001965 ORTHO05D002112 4.1e-17 91.7 93 58.1
BcaB04g19682 Brassica carinata HOM05D005016 ORTHO05D005740 5.3e-17 91.3 85 58.8
C09p05840 Brassica napus HOM05D005016 ORTHO05D005740 5.3e-17 91.3 85 58.8
BolC9t53511H Brassica oleracea HOM05D005016 ORTHO05D005740 5.3e-17 91.3 85 58.8
ECA236G0643 Erigeron canadensis HOM05D005016 ORTHO05D005740 9.0e-17 90.5 89 55.1
Sabra05G0033200 Salix brachista HOM05D005016 ORTHO05D005740 9.0e-17 90.5 85 57.6
THA.LOC104821717 Tarenaya hassleriana HOM05D005016 ORTHO05D005740 2.6e-16 89.0 91 60.4
unitig_899.g15345 Utricularia gibba HOM05D005016 ORTHO05D005740 5.0e-15 84.7 86 53.5
HanXRQChr12g0365431 Helianthus annuus HOM05D005016 ORTHO05D005740 6.5e-15 84.3 91 52.7
Pp3c27_2950 Physcomitrium patens HOM05D005016 ORTHO05D005740 1.9e-14 82.8 90 53.3
Pp3c5_10610 Physcomitrium patens HOM05D005016 ORTHO05D005740 5.5e-14 81.3 90 55.6
HanXRQChr12g0385591 Helianthus annuus HOM05D005016 ORTHO05D005740 9.4e-14 80.5 89 50.6
MD04G1203400 Malus domestica HOM05D005016 ORTHO05D005740 1.6e-13 79.7 92 53.3
SMO367G1055 Selaginella moellendorffii HOM05D005016 ORTHO05D005740 2.1e-13 79.3 85 48.2
FAN05G1032 Fragaria x ananassa HOM05D005016 ORTHO05D005740 4.6e-13 78.2 65 61.5
C07p40950 Brassica napus HOM05D001965 ORTHO05D002112 3.0e-12 75.5 96 53.1
Ca_21251_v3 Cicer arietinum L. HOM05D005016 ORTHO05D005740 1.5e-11 73.2 81 51.9
vmacro04578 Vaccinium macrocarpon HOM05D005016 ORTHO05D005740 5.7e-11 71.2 122 41.0
AagrBONN_evm.TU.Sc2ySwM_344.774 Anthoceros agrestis HOM05D005016 ORTHO05D005740 1.7e-10 69.7 99 41.4
CBR_g29551 Chara braunii HOM05D005016 ORTHO05D005740 2.2e-10 69.3 90 45.6
Phvul.007G179300 Phaseolus vulgaris HOM05D005016 ORTHO05D005740 2.2e-10 69.3 60 61.7
BolC7t44626H Brassica oleracea HOM05D005016 ORTHO05D005740 2.8e-10 68.9 105 47.6
CDE10G0931 Ceratophyllum demersum HOM05D005016 ORTHO05D005740 2.8e-10 68.9 68 54.4
Prupe.2G191000 Prunus persica HOM05D005016 ORTHO05D005740 8.2e-10 67.4 41 80.5
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.8e-09 66.2 49 65.3
Oeu012104.3 Olea europaea HOM05D005016 ORTHO05D005740 3.1e-09 65.5 64 56.2
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 6.9e-09 64.3 44 68.2
EL10Ac4g09400 Beta vulgaris HOM05D005016 ORTHO05D005740 5.9e-08 61.2 52 57.7
PGSC0003DMG400024698 Solanum tuberosum HOM05D005016 ORTHO05D005740 2.2e-07 59.3 106 36.8
CDE10G0345 Ceratophyllum demersum HOM05D005016 ORTHO05D005740 5.0e-07 58.2 52 53.8


User provided reference genes

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