Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0224171 Rosa chinensis HOM05D005362 ORTHO05D006895 1.7e-47 192.2 91 100.0
RcHm_v2.0_Chr7g0224161 Rosa chinensis HOM05D005362 ORTHO05D006895 1.7e-42 175.6 90 88.9
FvH4_5g29994 Fragaria vesca HOM05D005362 ORTHO05D006895 1.2e-40 169.5 90 85.6
FAN08G0864 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.2e-40 169.5 90 85.6
FAN13G2767 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.2e-40 169.5 90 85.6
FAN18G1237 Fragaria x ananassa HOM05D005362 ORTHO05D006895 1.2e-40 169.5 90 85.6
FAN06G4934 Fragaria x ananassa HOM05D005362 ORTHO05D006895 7.9e-40 166.8 90 83.3
Prupe.5G207600 Prunus persica HOM05D005362 ORTHO05D006895 1.0e-39 166.4 90 82.2
MD14G1214300 Malus domestica HOM05D005362 ORTHO05D006895 5.1e-39 164.1 90 80.0
MD06G1203500 Malus domestica HOM05D005362 ORTHO05D006895 2.8e-37 158.3 90 77.8
Hma1.2p1_0384F.1_g140800 Hydrangea macrophylla HOM05D005362 ORTHO05D006895 2.2e-34 148.7 90 72.2
PGR044G2646 Punica granatum HOM05D005362 ORTHO05D006895 2.2e-34 148.7 90 72.2
Gohir.D12G186500 Gossypium hirsutum HOM05D005362 ORTHO05D006895 2.9e-34 148.3 90 73.3
Duzib205G1468 Durio zibethinus HOM05D005362 ORTHO05D006895 3.8e-34 147.9 90 72.2
Gohir.A12G183600 Gossypium hirsutum HOM05D005362 ORTHO05D006895 3.8e-34 147.9 90 72.2
Thecc.03G104700 Theobroma cacao HOM05D005362 ORTHO05D006895 3.8e-34 147.9 90 73.3
COL.COLO4_24316 Corchorus olitorius HOM05D005362 ORTHO05D006895 4.9e-34 147.5 90 71.1
QL07p000780 Quercus lobata HOM05D005362 ORTHO05D006895 4.9e-34 147.5 90 72.2
CAN.G1228.5 Capsicum annuum HOM05D005362 ORTHO05D006895 6.4e-34 147.1 90 70.0
Potri.017G133400 Populus trichocarpa HOM05D005362 ORTHO05D006895 6.4e-34 147.1 90 73.3
Sabra17G0110200 Salix brachista HOM05D005362 ORTHO05D006895 6.4e-34 147.1 90 73.3
Nitab4.5_0003441g0070 Nicotiana tabacum HOM05D005362 ORTHO05D006895 8.4e-34 146.7 90 70.0
Gorai.008G199900 Gossypium raimondii HOM05D005362 ORTHO05D006895 1.1e-33 146.4 90 72.2
Rhsim12G0149500 Rhododendron simsii HOM05D005362 ORTHO05D006895 1.1e-33 146.4 90 70.0
Rhsim12G0149700 Rhododendron simsii HOM05D005362 ORTHO05D006895 1.1e-33 146.4 90 70.0
Cpa.g.sc67.22 Carica papaya HOM05D005362 ORTHO05D006895 1.4e-33 146.0 90 72.2
Hund02565 Selenicereus undatus HOM05D005362 ORTHO05D006895 1.4e-33 146.0 90 72.2
CSS0010906 Camellia sinensis var. sinensis HOM05D005362 ORTHO05D006895 1.9e-33 145.6 90 71.1
CSS0049665 Camellia sinensis var. sinensis HOM05D005362 ORTHO05D006895 1.9e-33 145.6 90 71.1
Lj5P134T43 Lonicera japonica HOM05D005362 ORTHO05D006895 1.9e-33 145.6 90 73.3
ClCG06G015530 Citrullus lanatus HOM05D005362 ORTHO05D006895 2.4e-33 145.2 90 70.0
Sed0019900 Sechium edule HOM05D005362 ORTHO05D006895 2.4e-33 145.2 90 70.0
PGSC0003DMG400024629 Solanum tuberosum HOM05D005362 ORTHO05D006895 2.4e-33 145.2 90 70.0
Ciclev10019809m.g Citrus clementina HOM05D005362 ORTHO05D006895 3.2e-33 144.8 90 71.1
CsaV3_1G003420 Cucumis sativus L. HOM05D005362 ORTHO05D006895 3.2e-33 144.8 90 70.0
Peaxi162Scf00201g00422 Petunia axillaris HOM05D005362 ORTHO05D006895 3.2e-33 144.8 90 71.1
Sopen03g034000 Solanum pennellii HOM05D005362 ORTHO05D006895 3.2e-33 144.8 90 68.9
Nitab4.5_0000939g0040 Nicotiana tabacum HOM05D005362 ORTHO05D006895 4.2e-33 144.4 90 70.0
Manes.06G082600 Manihot esculenta HOM05D005362 ORTHO05D006895 5.5e-33 144.1 90 70.0
Solyc03g114920.1 Solanum lycopersicum HOM05D005362 ORTHO05D006895 7.1e-33 143.7 90 68.9
TWI15G0078 Tripterygium wilfordii HOM05D005362 ORTHO05D006895 9.3e-33 143.3 90 71.1
Cfa014169 Carpinus fangiana HOM05D005362 ORTHO05D006895 1.2e-32 142.9 90 68.9
TWI81G0474 Tripterygium wilfordii HOM05D005362 ORTHO05D006895 1.2e-32 142.9 90 72.2
Actinidia35047 Actinidia chinensis HOM05D005362 ORTHO05D006895 1.6e-32 142.5 90 70.0
CiPaw.11G055600 Carya illinoinensis HOM05D005362 ORTHO05D006895 2.1e-32 142.1 90 71.1
Haze_22893 Corylus avellana HOM05D005362 ORTHO05D006895 2.7e-32 141.7 90 67.8
MELO3C017241.2 Cucumis melo HOM05D005362 ORTHO05D006895 2.7e-32 141.7 90 68.9
Cc11_g04710 Coffea canephora HOM05D005362 ORTHO05D006895 4.6e-32 141.0 90 70.0
AUR62029951 Chenopodium quinoa HOM05D005362 ORTHO05D006895 6.0e-32 140.6 90 66.7
MSTRG.11331 Avicennia marina HOM05D005362 ORTHO05D006895 7.9e-32 140.2 90 67.8
Phvul.007G187600 Phaseolus vulgaris HOM05D005362 ORTHO05D006895 7.9e-32 140.2 90 67.8
Glyma.20G225100 Glycine max HOM05D005362 ORTHO05D006895 1.0e-31 139.8 90 67.8
SGA_v2.0_scaffold28G11735 Striga asiatica HOM05D005362 ORTHO05D006895 1.0e-31 139.8 90 66.7
Eucgr.K02538 Eucalyptus grandis HOM05D005362 ORTHO05D006895 1.8e-31 139.0 90 65.6
Glyma.10G162500 Glycine max HOM05D005362 ORTHO05D006895 1.8e-31 139.0 90 65.6
Atru.chr9.504 Acer truncatum HOM05D005362 ORTHO05D006895 2.3e-31 138.7 90 66.7
EL10Ac5g12946 Beta vulgaris HOM05D005362 ORTHO05D006895 2.3e-31 138.7 90 64.4
AUR62033752 Chenopodium quinoa HOM05D005362 ORTHO05D006895 3.0e-31 138.3 90 65.6
Nn3g17489 Nelumbo nucifera HOM05D005362 ORTHO05D006895 3.0e-31 138.3 90 66.7
TAR371G1139 Trochodendron aralioides HOM05D005362 ORTHO05D006895 3.0e-31 138.3 90 66.7
Sc10g0009660 Simmondsia chinensis HOM05D005362 ORTHO05D006895 3.9e-31 137.9 90 64.4
vmacro08819 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 3.9e-31 137.9 90 67.8
Lalb_Chr07g0178371 Lupinus albus HOM05D005362 ORTHO05D006895 8.7e-31 136.7 90 66.7
Lj2g0009795 Lotus japonicus HOM05D005362 ORTHO05D006895 1.1e-30 136.3 90 65.6
PSO170G2279 Papaver somniferum HOM05D005362 ORTHO05D006895 1.1e-30 136.3 90 64.4
Oeu052452.1 Olea europaea HOM05D005362 ORTHO05D006895 1.5e-30 136.0 90 66.7
GSVIVG01008125001 Vitis vinifera HOM05D005362 ORTHO05D006895 1.5e-30 136.0 90 65.6
PSO017G2639 Papaver somniferum HOM05D005362 ORTHO05D006895 2.5e-30 135.2 90 63.3
VMungo0720G1218 Vigna mungo HOM05D005362 ORTHO05D006895 2.5e-30 135.2 90 64.4
THA.LOC104804616 Tarenaya hassleriana HOM05D005362 ORTHO05D006895 3.3e-30 134.8 90 64.4
Migut.B00504 Erythranthe guttata HOM05D005362 ORTHO05D006895 5.6e-30 134.0 90 66.7
PSO478G3079 Papaver somniferum HOM05D005362 ORTHO05D006895 5.6e-30 134.0 90 63.3
unitig_749.g13428 Utricularia gibba HOM05D005362 ORTHO05D006895 5.6e-30 134.0 90 65.6
Psat7g043680 Pisum sativum HOM05D005362 ORTHO05D006895 7.4e-30 133.7 90 61.1
DCAR_022335 Daucus carota HOM05D005362 ORTHO05D006895 9.6e-30 133.3 90 64.4
AT5G60960 Arabidopsis thaliana HOM05D005362 ORTHO05D006895 1.6e-29 132.5 90 67.8
Lsat_1_v5_gn_5_23641 Lactuca sativa HOM05D005362 ORTHO05D006895 1.6e-29 132.5 90 64.4
Ca_17613_v3 Cicer arietinum L. HOM05D005362 ORTHO05D006895 2.1e-29 132.1 90 61.1
unitig_26.g9670 Utricularia gibba HOM05D005362 ORTHO05D006895 2.1e-29 132.1 90 62.2
Sp2g24260 Schrenkiella parvula HOM05D005362 ORTHO05D006895 2.8e-29 131.7 90 68.9
Carub.0008s2165 Capsella rubella HOM05D005362 ORTHO05D006895 3.7e-29 131.3 90 67.8
Medtr8g094650 Medicago truncatula HOM05D005362 ORTHO05D006895 3.7e-29 131.3 90 61.1
Aa31LG11G2340 Aethionema arabicum HOM05D005362 ORTHO05D006895 4.8e-29 131.0 90 65.6
FvH4_7g15150 Fragaria vesca HOM05D005362 ORTHO05D006895 4.8e-29 131.0 71 84.5
CARHR274640 Cardamine hirsuta HOM05D005362 ORTHO05D006895 8.2e-29 130.2 90 66.7
CDE10G0094 Ceratophyllum demersum HOM05D005362 ORTHO05D006895 8.2e-29 130.2 90 62.2
Thhalv10004006m.g Eutrema salsugineum HOM05D005362 ORTHO05D006895 8.2e-29 130.2 90 66.7
HanXRQChr05g0154331 Helianthus annuus HOM05D005362 ORTHO05D006895 1.4e-28 129.4 90 62.2
TPR.G37431 Trifolium pratense HOM05D005362 ORTHO05D006895 4.0e-28 127.9 90 58.9
AL8G37580 Arabidopsis lyrata HOM05D005362 ORTHO05D006895 9.0e-28 126.7 90 65.6
Aqoxy3G03650 Aquilegia oxysepala HOM05D005362 ORTHO05D006895 1.5e-27 125.9 90 60.0
SHI17437 Sapria himalayana HOM05D005362 ORTHO05D006895 1.5e-27 125.9 90 60.0
ECA246G1962 Erigeron canadensis HOM05D005362 ORTHO05D006895 5.8e-27 124.0 90 61.1
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 3.8e-26 121.3 90 57.8
SHI19627 Sapria himalayana HOM05D005362 ORTHO05D006895 1.2e-24 116.3 90 56.7
Lj1g0020401 Lotus japonicus HOM05D005362 ORTHO05D006895 3.0e-23 111.7 90 60.0
vmacro11106 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 2.8e-21 105.1 66 69.7
vmacro16484 Vaccinium macrocarpon HOM05D005362 ORTHO05D006895 6.3e-21 104.0 66 69.7
ATR0618G438 Amborella trichopoda HOM05D005362 ORTHO05D006895 8.2e-21 103.6 88 50.0
BcaC06g33209 Brassica carinata HOM05D005362 ORTHO05D006895 1.4e-20 102.8 90 57.8
Nitab4.5_0012631g0030 Nicotiana tabacum HOM05D005362 ORTHO05D006895 2.4e-20 102.1 66 65.2
HPP92_008261 Vanilla planifolia HOM05D005362 ORTHO05D006895 5.3e-20 100.9 90 48.9
HPP92_008265 Vanilla planifolia HOM05D005362 ORTHO05D006895 5.3e-20 100.9 90 48.9
Medtr1g052810 Medicago truncatula HOM05D005362 ORTHO05D006895 4.3e-14 81.3 66 56.1
Zm00001eb108830 Zea mays HOM05D005362 ORTHO05D006895 7.4e-14 80.5 82 45.1
Os07g0603900 Oryza sativa ssp. japonica HOM05D005362 ORTHO05D006895 2.2e-13 79.0 82 43.9
Dinv17441 Davidia involucrata HOM05D005362 ORTHO05D006895 2.8e-13 78.6 90 46.7
Actinidia18977 Actinidia chinensis HOM05D005362 ORTHO05D006895 1.2e-11 73.2 69 58.0
PSO017G2138 Papaver somniferum HOM05D005362 ORTHO05D006895 3.4e-11 71.6 41 68.3
MBI07_g10352_MAGBIO Magnolia biondii HOM05D007937 ORTHO05D010000 1.0e-07 60.1 88 31.8
Aqoxy6G01988 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 1.8e-07 59.3 73 39.7
QL02p012919 Quercus lobata HOM05D000424 ORTHO05D000355 3.0e-07 58.5 73 38.4
Sopen03g035440 Solanum pennellii HOM05D000424 ORTHO05D000355 8.8e-07 57.0 85 30.6
Nn1g07956 Nelumbo nucifera HOM05D000424 ORTHO05D000355 5.7e-06 54.3 73 35.6
Lsat_1_v5_gn_2_6800 Lactuca sativa HOM05D000424 ORTHO05D000355 7.4e-06 53.9 75 33.3
Lj4C17T15 Lonicera japonica HOM05D000424 ORTHO05D000355 9.7e-06 53.5 69 37.7


User provided reference genes

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