Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0222811 Rosa chinensis HOM05D000366 ORTHO05D000437 7.1e-127 457.2 223 100.0
RcHm_v2.0_Chr7g0224411 Rosa chinensis HOM05D000366 ORTHO05D000437 7.9e-110 400.6 207 92.8
FvH4_6g26070 Fragaria vesca HOM05D000366 ORTHO05D000437 1.0e-72 277.3 281 54.8
MD11G1071500 Malus domestica HOM05D000366 ORTHO05D000437 4.4e-44 182.2 140 65.0
Prupe.6G055100 Prunus persica HOM05D000366 ORTHO05D000437 6.4e-43 178.3 158 58.9
RcHm_v2.0_Chr5g0070181 Rosa chinensis HOM05D000366 ORTHO05D000437 1.2e-41 174.1 174 52.3
FAN11G2311 Fragaria x ananassa HOM05D000366 ORTHO05D000437 6.0e-41 171.8 156 53.8
FvH4_3g38930 Fragaria vesca HOM05D000366 ORTHO05D000437 1.7e-40 170.2 156 53.2
FAN25G2814 Fragaria x ananassa HOM05D000366 ORTHO05D000437 3.0e-40 169.5 156 53.8
FAN21G1554 Fragaria x ananassa HOM05D000366 ORTHO05D000437 5.1e-40 168.7 156 53.2
Gorai.001G116700 Gossypium raimondii HOM05D000366 ORTHO05D000437 1.1e-34 151.0 164 45.1
CiPaw.14G057900 Carya illinoinensis HOM05D000366 ORTHO05D000437 1.4e-34 150.6 140 55.0
Gohir.A07G104600 Gossypium hirsutum HOM05D000366 ORTHO05D000437 1.4e-34 150.6 165 45.5
Gohir.D07G108600 Gossypium hirsutum HOM05D000366 ORTHO05D000437 1.4e-34 150.6 165 46.1
Cfa011718 Carpinus fangiana HOM05D000366 ORTHO05D000437 2.1e-33 146.7 155 49.0
Haze_24352 Corylus avellana HOM05D000366 ORTHO05D000437 7.8e-33 144.8 140 52.1
Sc21g0006460 Simmondsia chinensis HOM05D000366 ORTHO05D000437 1.0e-32 144.4 159 46.5
Cpa.g.sc2.437 Carica papaya HOM05D000366 ORTHO05D000437 2.3e-32 143.3 132 51.5
ClCG02G019470 Citrullus lanatus HOM05D000366 ORTHO05D000437 5.1e-32 142.1 129 52.7
QL01p038772 Quercus lobata HOM05D000366 ORTHO05D000437 5.1e-32 142.1 139 50.4
GSVIVG01024715001 Vitis vinifera HOM05D000366 ORTHO05D000437 5.1e-32 142.1 169 43.2
Lalb_Chr22g0361321 Lupinus albus HOM05D000366 ORTHO05D000437 8.7e-32 141.4 141 50.4
MELO3C035107.2 Cucumis melo HOM05D000366 ORTHO05D000437 1.1e-31 141.0 135 51.9
Thecc.09G299000 Theobroma cacao HOM05D000366 ORTHO05D000437 1.1e-31 141.0 185 41.1
Dinv03096 Davidia involucrata HOM05D000366 ORTHO05D000437 2.5e-31 139.8 176 44.3
Ca_26261_v3 Cicer arietinum L. HOM05D000366 ORTHO05D000437 3.3e-31 139.4 115 54.8
TPR.G27813 Trifolium pratense HOM05D000366 ORTHO05D000437 3.3e-31 139.4 115 55.7
CiPaw.13G075600 Carya illinoinensis HOM05D000366 ORTHO05D000437 4.3e-31 139.0 143 49.7
COL.COLO4_19189 Corchorus olitorius HOM05D000366 ORTHO05D000437 7.3e-31 138.3 177 42.9
CsaV3_6G016100 Cucumis sativus L. HOM05D000366 ORTHO05D000437 7.3e-31 138.3 132 48.5
Ciclev10027689m.g Citrus clementina HOM05D000366 ORTHO05D000437 1.6e-30 137.1 121 52.1
Thhalv10012519m.g Eutrema salsugineum HOM05D000366 ORTHO05D000437 2.8e-30 136.3 120 50.0
TWI79G0902 Tripterygium wilfordii HOM05D000366 ORTHO05D000437 3.6e-30 136.0 161 47.8
Glyma.02G227900 Glycine max HOM05D000366 ORTHO05D000437 6.2e-30 135.2 114 53.5
Medtr5g071340 Medicago truncatula HOM05D000366 ORTHO05D000437 6.2e-30 135.2 115 52.2
Psat2g057000 Pisum sativum HOM05D000366 ORTHO05D000437 6.2e-30 135.2 115 53.9
Glyma.11G171200 Glycine max HOM05D000366 ORTHO05D000437 8.1e-30 134.8 190 41.1
Glyma.14G194800 Glycine max HOM05D000366 ORTHO05D000437 3.1e-29 132.9 141 43.3
Lj1C131G7 Lonicera japonica HOM05D000366 ORTHO05D000437 9.0e-29 131.3 103 56.3
Glyma.11G170900 Glycine max HOM05D000366 ORTHO05D000437 1.2e-28 131.0 131 48.1
Lalb_Chr15g0082981 Lupinus albus HOM05D000366 ORTHO05D000437 2.0e-28 130.2 133 48.9
TPR.G29027 Trifolium pratense HOM05D000366 ORTHO05D000437 2.0e-28 130.2 142 50.0
THA.LOC104810704 Tarenaya hassleriana HOM05D000366 ORTHO05D000437 2.6e-28 129.8 108 53.7
arahy.Tifrunner.gnm1.ann1.J886VA Arachis hypogaea HOM05D000366 ORTHO05D000437 3.4e-28 129.4 139 41.7
LjContig00141g0006273 Lotus japonicus HOM05D000366 ORTHO05D000437 3.4e-28 129.4 135 50.4
Actinidia32638 Actinidia chinensis HOM05D000366 ORTHO05D000437 4.5e-28 129.0 113 52.2
arahy.Tifrunner.gnm1.ann1.C2LCIC Arachis hypogaea HOM05D000366 ORTHO05D000437 4.5e-28 129.0 114 50.9
arahy.Tifrunner.gnm1.ann1.E0FZPT Arachis hypogaea HOM05D000366 ORTHO05D000437 4.5e-28 129.0 114 50.9
A10p15650 Brassica napus HOM05D000366 ORTHO05D000223 4.5e-28 129.0 122 49.2
Dinv28657 Davidia involucrata HOM05D000366 ORTHO05D000437 4.5e-28 129.0 120 50.0
Migut.N00775 Erythranthe guttata HOM05D000366 ORTHO05D000437 4.5e-28 129.0 132 50.0
Lalb_Chr17g0345161 Lupinus albus HOM05D000366 ORTHO05D000437 5.8e-28 128.6 121 48.8
Sed0009073 Sechium edule HOM05D000366 ORTHO05D000437 5.8e-28 128.6 120 52.5
VMungo0647G2119 Vigna mungo HOM05D000366 ORTHO05D000437 7.6e-28 128.3 113 51.3
arahy.Tifrunner.gnm1.ann1.S706JK Arachis hypogaea HOM05D000366 ORTHO05D000437 9.9e-28 127.9 139 41.0
Carub.0008s1923 Capsella rubella HOM05D000366 ORTHO05D000437 9.9e-28 127.9 115 51.3
THA.LOC104815060 Tarenaya hassleriana HOM05D000366 ORTHO05D000437 9.9e-28 127.9 127 51.2
Aa31LG11G390 Aethionema arabicum HOM05D000366 ORTHO05D000437 1.3e-27 127.5 115 51.3
BraA10t43668Z Brassica rapa HOM05D000366 ORTHO05D000223 1.3e-27 127.5 122 49.2
CSS0028830 Camellia sinensis var. sinensis HOM05D000366 ORTHO05D000437 1.3e-27 127.5 123 48.0
Ca_14957_v3 Cicer arietinum L. HOM05D000366 ORTHO05D000437 1.3e-27 127.5 142 43.7
VMungo0540G1355 Vigna mungo HOM05D000366 ORTHO05D000437 1.3e-27 127.5 121 47.1
AL8G34880 Arabidopsis lyrata HOM05D000366 ORTHO05D000437 1.7e-27 127.1 108 51.9
Phvul.006G069100 Phaseolus vulgaris HOM05D000366 ORTHO05D000437 1.7e-27 127.1 141 43.3
Potri.009G072600 Populus trichocarpa HOM05D000366 ORTHO05D000437 1.7e-27 127.1 114 49.1
Ah.10g029430 Amaranthus hybridus HOM05D000366 ORTHO05D000437 2.2e-27 126.7 121 49.6
Lsat_1_v5_gn_5_173100 Lactuca sativa HOM05D000366 ORTHO05D000437 2.9e-27 126.3 107 50.5
Manes.12G090700 Manihot esculenta HOM05D000366 ORTHO05D000437 2.9e-27 126.3 115 47.8
C09p50690 Brassica napus HOM05D000366 ORTHO05D000437 3.8e-27 125.9 115 50.4
Duzib168G1898 Durio zibethinus HOM05D000366 ORTHO05D000437 4.9e-27 125.6 113 52.2
AT5G58610 Arabidopsis thaliana HOM05D000366 ORTHO05D000437 6.4e-27 125.2 115 49.6
AUR62001624 Chenopodium quinoa HOM05D000366 ORTHO05D000437 6.4e-27 125.2 139 45.3
Sabra09G0054900 Salix brachista HOM05D000366 ORTHO05D000437 8.4e-27 124.8 158 39.2
Rhsim13G0068000 Rhododendron simsii HOM05D000366 ORTHO05D000437 1.9e-26 123.6 112 50.0
Lj2C1083G3 Lonicera japonica HOM05D000366 ORTHO05D000437 2.4e-26 123.2 129 48.8
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 3.2e-26 122.9 104 51.0
AUR62020153 Chenopodium quinoa HOM05D000366 ORTHO05D000437 5.4e-26 122.1 120 48.3
Nn2g13155 Nelumbo nucifera HOM05D000366 ORTHO05D000437 5.4e-26 122.1 111 51.4
Hund20988 Selenicereus undatus HOM05D000366 ORTHO05D000437 5.4e-26 122.1 120 45.8
vmacro02952 Vaccinium macrocarpon HOM05D000366 ORTHO05D000437 7.1e-26 121.7 132 43.2
Lsat_1_v5_gn_8_70821 Lactuca sativa HOM05D000366 ORTHO05D000437 9.3e-26 121.3 103 51.5
Eucgr.J01892 Eucalyptus grandis HOM05D000366 ORTHO05D000437 1.2e-25 120.9 122 46.7
EL10Ac7g16192 Beta vulgaris HOM05D000366 ORTHO05D000437 1.6e-25 120.6 175 36.6
Cc01_g14390 Coffea canephora HOM05D000366 ORTHO05D000437 2.7e-25 119.8 140 44.3
DCAR_004481 Daucus carota HOM05D000366 ORTHO05D000437 2.7e-25 119.8 113 48.7
ECA248G0431 Erigeron canadensis HOM05D000366 ORTHO05D000437 4.6e-25 119.0 124 41.9
SGA_v2.0_scaffold120G32900 Striga asiatica HOM05D000366 ORTHO05D000437 4.6e-25 119.0 112 48.2
CAN.G1023.1 Capsicum annuum HOM05D000366 ORTHO05D000437 7.9e-25 118.2 108 49.1
ECA236G5035 Erigeron canadensis HOM05D000366 ORTHO05D000437 1.0e-24 117.9 113 43.4
HanXRQChr09g0261771 Helianthus annuus HOM05D000366 ORTHO05D000437 1.0e-24 117.9 101 49.5
Medtr4g027030 Medicago truncatula HOM05D000366 ORTHO05D000437 1.0e-24 117.9 116 50.0
PSO384G1366 Papaver somniferum HOM05D000366 ORTHO05D000437 1.0e-24 117.9 175 37.7
DCAR_007366 Daucus carota HOM05D000366 ORTHO05D000437 1.3e-24 117.5 101 53.5
Psat5g152800 Pisum sativum HOM05D000366 ORTHO05D000437 1.3e-24 117.5 139 42.4
Peaxi162Scf00207g00633 Petunia axillaris HOM05D000366 ORTHO05D000437 1.8e-24 117.1 185 35.7
Atru.chr3.4178 Acer truncatum HOM05D000043 ORTHO05D000437 2.3e-24 116.7 107 53.3
Atru.chr3.4188 Acer truncatum HOM05D000366 ORTHO05D000437 2.3e-24 116.7 107 53.3
CAN.G394.137 Capsicum annuum HOM05D000366 ORTHO05D000437 3.0e-24 116.3 143 38.5
Hund18838 Selenicereus undatus HOM05D000366 ORTHO05D000437 3.0e-24 116.3 123 44.7
Sopen06g033450 Solanum pennellii HOM05D000366 ORTHO05D000437 3.9e-24 115.9 139 40.3
Medtr3g464550 Medicago truncatula HOM05D000366 ORTHO05D000437 5.1e-24 115.5 122 48.4
Solyc06g082040.2 Solanum lycopersicum HOM05D000366 ORTHO05D000437 5.1e-24 115.5 139 39.6
unitig_60.g25553 Utricularia gibba HOM05D000366 ORTHO05D000437 6.7e-24 115.2 113 51.3
Nn2g10878 Nelumbo nucifera HOM05D000366 ORTHO05D000437 8.7e-24 114.8 111 46.8
MBI03_g07315_MAGBIO Magnolia biondii HOM05D000366 ORTHO05D000437 1.1e-23 114.4 112 48.2
BolC9t57918H Brassica oleracea HOM05D000366 ORTHO05D000437 1.5e-23 114.0 95 52.6
ECA247G0378 Erigeron canadensis HOM05D000366 ORTHO05D000437 1.5e-23 114.0 104 45.2
PGR102G2158 Punica granatum HOM05D000366 ORTHO05D000437 2.5e-23 113.2 127 44.1
Aqoxy2G00854 Aquilegia oxysepala HOM05D000366 ORTHO05D000437 4.3e-23 112.5 114 47.4
Nitab4.5_0000684g0160 Nicotiana tabacum HOM05D000366 ORTHO05D000437 5.6e-23 112.1 185 35.7
Nitab4.5_0000839g0030 Nicotiana tabacum HOM05D000366 ORTHO05D000437 5.6e-23 112.1 141 39.0
HanXRQChr08g0214041 Helianthus annuus HOM05D000366 ORTHO05D000437 9.6e-23 111.3 95 50.5
arahy.Tifrunner.gnm1.ann1.297ZDF Arachis hypogaea HOM05D000366 ORTHO05D000437 1.3e-22 110.9 94 48.9
arahy.Tifrunner.gnm1.ann1.BVBE6Z Arachis hypogaea HOM05D000366 ORTHO05D000437 1.3e-22 110.9 94 48.9
PSO339G5412 Papaver somniferum HOM05D000366 ORTHO05D000437 2.1e-22 110.2 114 50.0
PGR119G0306 Punica granatum HOM05D000366 ORTHO05D000437 2.1e-22 110.2 111 42.3
Nitab4.5_0000719g0100 Nicotiana tabacum HOM05D000366 ORTHO05D000437 2.8e-22 109.8 104 48.1
CARHR272470 Cardamine hirsuta HOM05D000366 ORTHO05D000437 4.8e-22 109.0 90 54.4
Nitab4.5_0001371g0040 Nicotiana tabacum HOM05D000366 ORTHO05D000437 8.1e-22 108.2 141 39.0
PSO801G0460 Papaver somniferum HOM05D000366 ORTHO05D000437 8.1e-22 108.2 112 49.1
CANSAT54G2633 Cannabis sativa HOM05D000366 ORTHO05D000437 1.8e-21 107.1 97 50.5
PSO832G2218 Papaver somniferum HOM05D000366 ORTHO05D000437 1.8e-21 107.1 108 45.4
PSO017G3777 Papaver somniferum HOM05D000366 ORTHO05D000437 3.1e-21 106.3 104 47.1
VMungo0251G0507 Vigna mungo HOM05D000366 ORTHO05D000437 5.3e-21 105.5 130 40.8
PSO063G6753 Papaver somniferum HOM05D000366 ORTHO05D000437 9.0e-21 104.8 108 44.4
Aqoxy4G02520 Aquilegia oxysepala HOM05D000366 ORTHO05D000437 1.2e-20 104.4 95 48.4
PGSC0003DMG400022079 Solanum tuberosum HOM05D000366 ORTHO05D000437 1.5e-20 104.0 177 34.5
PSO478G0388 Papaver somniferum HOM05D000366 ORTHO05D000437 7.6e-20 101.7 112 42.0
PSO017G6697 Papaver somniferum HOM05D000366 ORTHO05D000437 1.7e-19 100.5 112 42.0
Solyc09g031580.3 Solanum lycopersicum HOM05D000366 ORTHO05D000437 2.2e-19 100.1 117 41.9
Sopen09g013940 Solanum pennellii HOM05D000366 ORTHO05D000437 2.2e-19 100.1 117 41.9
Lj6g0002719 Lotus japonicus HOM05D000366 ORTHO05D000437 6.4e-19 98.6 123 37.4
Ah.01g021980 Amaranthus hybridus HOM05D000366 ORTHO05D000437 1.1e-18 97.8 104 41.3
PSO478G1258 Papaver somniferum HOM05D000366 ORTHO05D000437 2.4e-18 96.7 107 42.1
Zm00001eb013420 Zea mays HOM05D000366 ORTHO05D000437 2.4e-18 96.7 163 33.7
Peaxi162Scf00540g00214 Petunia axillaris HOM05D000366 ORTHO05D000437 7.1e-18 95.1 143 38.5
Nn5g28474 Nelumbo nucifera HOM05D000366 ORTHO05D000437 1.6e-17 94.0 95 42.1
PSO017G2435 Papaver somniferum HOM05D000366 ORTHO05D000437 3.5e-17 92.8 104 41.3
Actinidia23227 Actinidia chinensis HOM05D000366 ORTHO05D000437 1.1e-15 87.8 53 64.2
AUR62000501 Chenopodium quinoa HOM05D000366 ORTHO05D000437 1.9e-15 87.0 96 38.5
TAR628G0036 Trochodendron aralioides HOM05D000366 ORTHO05D000437 4.3e-15 85.9 95 37.9
AUR62006847 Chenopodium quinoa HOM05D000366 ORTHO05D000437 5.6e-15 85.5 96 37.5
Duzib264G1239 Durio zibethinus HOM05D000366 ORTHO05D000437 5.6e-15 85.5 97 36.1
Hund07250 Selenicereus undatus HOM05D000366 ORTHO05D000437 9.6e-15 84.7 96 38.5
Thecc.01G136100 Theobroma cacao HOM05D000366 ORTHO05D000437 1.3e-14 84.3 97 35.1
ATR0594G012 Amborella trichopoda HOM05D000366 ORTHO05D000437 1.6e-14 84.0 91 40.7
EL10Ac4g09606 Beta vulgaris HOM05D000366 ORTHO05D000437 2.8e-14 83.2 98 36.7
COL.COLO4_35796 Corchorus olitorius HOM05D006533 ORTHO05D008625 2.8e-14 83.2 97 36.1
ATR0051G058 Amborella trichopoda HOM05D000366 ORTHO05D000437 3.7e-14 82.8 107 39.3
Gohir.A10G157200 Gossypium hirsutum HOM05D000366 ORTHO05D000437 6.2e-14 82.0 97 38.1
Gohir.D10G108300 Gossypium hirsutum HOM05D000366 ORTHO05D000437 6.2e-14 82.0 97 38.1
Gorai.011G118800 Gossypium raimondii HOM05D000366 ORTHO05D000437 6.2e-14 82.0 97 38.1
HPP92_023745 Vanilla planifolia HOM05D000366 ORTHO05D000437 8.1e-14 81.6 97 37.1
Manes.13G084500 Manihot esculenta HOM05D000366 ORTHO05D000437 1.1e-13 81.3 119 31.9
Eucgr.I00172 Eucalyptus grandis HOM05D000366 ORTHO05D000437 1.4e-13 80.9 89 37.1
Ah.06g190920 Amaranthus hybridus HOM05D000366 ORTHO05D000437 4.0e-13 79.3 98 36.7
BcaC04g19822 Brassica carinata HOM05D000366 ORTHO05D000437 4.0e-13 79.3 63 54.0
ATR1131G024 Amborella trichopoda HOM05D000366 ORTHO05D000437 1.2e-12 77.8 127 34.6
ATR0661G075 Amborella trichopoda HOM05D050051 ORTHO05D038298 1.5e-12 77.4 97 37.1
PGR119G1519 Punica granatum HOM05D000366 ORTHO05D000437 3.4e-12 76.3 95 36.8
Sc09g0002310 Simmondsia chinensis HOM05D000366 ORTHO05D000437 3.4e-12 76.3 94 35.1
CSS0023782 Camellia sinensis var. sinensis HOM05D000366 ORTHO05D000437 5.8e-12 75.5 94 37.2
CSS0024592 Camellia sinensis var. sinensis HOM05D000366 ORTHO05D000437 5.8e-12 75.5 94 37.2
SEGI_22566 Sequoiadendron giganteum HOM05D000366 ORTHO05D000437 4.2e-10 69.3 98 34.7
SEGI_26709 Sequoiadendron giganteum HOM05D000366 ORTHO05D000437 1.5e-07 60.8 85 35.3
TPR.G23533 Trifolium pratense HOM05D000366 ORTHO05D051447 6.3e-06 55.5 35 65.7


User provided reference genes

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