Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0221431 Rosa chinensis HOM05D003362 ORTHO05D003783 3.7e-52 208.0 108 100.0
FAN03G1303 Fragaria x ananassa HOM05D003362 ORTHO05D003783 1.9e-32 142.5 95 85.3
FvH4_7g20870 Fragaria vesca HOM05D003362 ORTHO05D003783 1.6e-31 139.4 95 83.2
FAN06G2019 Fragaria x ananassa HOM05D003362 ORTHO05D003783 1.6e-31 139.4 95 83.2
FAN10G3261 Fragaria x ananassa HOM05D003362 ORTHO05D003783 4.6e-31 137.9 90 83.3
RcHm_v2.0_Chr1g0365111 Rosa chinensis HOM05D003362 ORTHO05D003783 2.3e-30 135.6 78 92.3
Cfa001554 Carpinus fangiana HOM05D003362 ORTHO05D003783 6.1e-23 110.9 73 74.0
QL08p057674 Quercus lobata HOM05D003362 ORTHO05D003783 6.1e-23 110.9 88 67.0
Haze_16975 Corylus avellana HOM05D003093 ORTHO05D004301 1.5e-21 106.3 88 62.5
CiPaw.01G280400 Carya illinoinensis HOM05D003362 ORTHO05D003783 5.7e-21 104.4 88 64.8
TAR623G0942 Trochodendron aralioides HOM05D003362 ORTHO05D003783 2.8e-20 102.1 80 71.2
AUR62020547 Chenopodium quinoa HOM05D003362 ORTHO05D003783 1.1e-19 100.1 97 57.7
Dinv31395 Davidia involucrata HOM05D003362 ORTHO05D003783 1.4e-19 99.8 82 68.3
Atru.chr12.582 Acer truncatum HOM05D003362 ORTHO05D003783 2.4e-19 99.0 87 64.4
Prupe.2G225200 Prunus persica HOM05D003362 ORTHO05D003783 5.3e-19 97.8 71 74.6
PGR142G2050 Punica granatum HOM05D003362 ORTHO05D003783 5.3e-19 97.8 62 79.0
TWI38G1411 Tripterygium wilfordii HOM05D003362 ORTHO05D003783 5.3e-19 97.8 80 67.5
AUR62015655 Chenopodium quinoa HOM05D003362 ORTHO05D003783 1.2e-18 96.7 97 55.7
MBI14_g16292_MAGBIO Magnolia biondii HOM05D003362 ORTHO05D003783 4.5e-18 94.7 74 66.2
MD01G1117800 Malus domestica HOM05D003362 ORTHO05D003783 4.5e-18 94.7 83 63.9
SalBow1G4850 Salvia bowleyana HOM05D003362 ORTHO05D003783 4.5e-18 94.7 64 75.0
Actinidia38221 Actinidia chinensis HOM05D003362 ORTHO05D003783 5.9e-18 94.4 66 72.7
MSTRG.21607 Avicennia marina HOM05D003362 ORTHO05D003783 5.9e-18 94.4 82 62.2
Cc02_g08570 Coffea canephora HOM05D003362 ORTHO05D003783 5.9e-18 94.4 75 68.0
Potri.010G213000 Populus trichocarpa HOM05D003362 ORTHO05D003783 1.0e-17 93.6 85 57.6
arahy.Tifrunner.gnm1.ann1.TJ3PHW Arachis hypogaea HOM05D003362 ORTHO05D003783 1.3e-17 93.2 82 61.0
arahy.Tifrunner.gnm1.ann1.VJQ7J1 Arachis hypogaea HOM05D003362 ORTHO05D003783 1.3e-17 93.2 82 61.0
SalBow3G2785 Salvia bowleyana HOM05D003362 ORTHO05D003783 1.3e-17 93.2 64 73.4
SalBow3G3107 Salvia bowleyana HOM05D003362 ORTHO05D003783 1.3e-17 93.2 64 73.4
GSVIVG01032619001 Vitis vinifera HOM05D003362 ORTHO05D003783 1.3e-17 93.2 67 73.1
MD01G1118000 Malus domestica HOM05D003362 ORTHO05D003783 1.7e-17 92.8 87 60.9
Nn2g12834 Nelumbo nucifera HOM05D003362 ORTHO05D003783 1.7e-17 92.8 72 70.8
CSS0028549 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 2.9e-17 92.0 66 71.2
CSS0050436 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 2.9e-17 92.0 66 71.2
Lj1A930T84 Lonicera japonica HOM05D003362 ORTHO05D003783 2.9e-17 92.0 84 58.3
THA.LOC104825165 Tarenaya hassleriana HOM05D003362 ORTHO05D003783 3.8e-17 91.7 77 61.0
CAN.G184.19 Capsicum annuum HOM05D003362 ORTHO05D003783 5.0e-17 91.3 82 61.0
MD01G1118100 Malus domestica HOM05D003362 ORTHO05D003783 5.0e-17 91.3 83 61.4
CSS0023458 Camellia sinensis var. sinensis HOM05D003362 ORTHO05D003783 6.5e-17 90.9 66 71.2
Manes.07G107200 Manihot esculenta HOM05D003362 ORTHO05D003783 6.5e-17 90.9 81 59.3
vmacro07205 Vaccinium macrocarpon HOM05D003362 ORTHO05D003783 8.5e-17 90.5 73 65.8
A07p22450 Brassica napus HOM05D003362 ORTHO05D003783 1.4e-16 89.7 73 67.1
BolC6t37453H Brassica oleracea HOM05D003362 ORTHO05D003783 1.4e-16 89.7 73 67.1
BraA07t29921Z Brassica rapa HOM05D003362 ORTHO05D003783 1.4e-16 89.7 73 67.1
PSO384G0434 Papaver somniferum HOM05D003362 ORTHO05D003783 1.4e-16 89.7 94 53.2
BcaB02g07695 Brassica carinata HOM05D003362 ORTHO05D003783 2.5e-16 89.0 73 67.1
Sabra10G0164900 Salix brachista HOM05D003362 ORTHO05D003783 2.5e-16 89.0 68 64.7
Rhsim01G0013100 Rhododendron simsii HOM05D003362 ORTHO05D003783 3.2e-16 88.6 73 65.8
Actinidia38220 Actinidia chinensis HOM05D003362 ORTHO05D003783 4.2e-16 88.2 66 66.7
Ca_11318_v3 Cicer arietinum L. HOM05D003362 ORTHO05D003783 5.5e-16 87.8 77 66.2
TPR.G10384 Trifolium pratense HOM05D003362 ORTHO05D003783 5.5e-16 87.8 84 56.0
VMungo0720G3152 Vigna mungo HOM05D003362 ORTHO05D003783 5.5e-16 87.8 63 71.4
EL10Ac2g03488 Beta vulgaris HOM05D003362 ORTHO05D003783 7.2e-16 87.4 90 55.6
BcaC08g44726 Brassica carinata HOM05D003362 ORTHO05D003783 7.2e-16 87.4 73 65.8
C06p22640 Brassica napus HOM05D003362 ORTHO05D003783 7.2e-16 87.4 73 65.8
PSO339G0073 Papaver somniferum HOM05D003362 ORTHO05D003783 7.2e-16 87.4 94 53.2
unitig_0.g651 Utricularia gibba HOM05D003362 ORTHO05D003783 7.2e-16 87.4 65 70.8
Duzib114G0926 Durio zibethinus HOM05D003362 ORTHO05D003783 9.4e-16 87.0 74 62.2
Hund19984 Selenicereus undatus HOM05D003362 ORTHO05D003783 9.4e-16 87.0 80 57.5
Carub.0005s2175 Capsella rubella HOM05D003362 ORTHO05D003783 1.2e-15 86.7 73 63.0
Sp5g07300 Schrenkiella parvula HOM05D003362 ORTHO05D003783 1.2e-15 86.7 63 68.3
Thecc.10G060600 Theobroma cacao HOM05D003362 ORTHO05D003783 1.2e-15 86.7 73 61.6
Migut.D00159 Erythranthe guttata HOM05D003362 ORTHO05D003783 1.6e-15 86.3 79 59.5
MD07G1186300 Malus domestica HOM05D003362 ORTHO05D003783 1.6e-15 86.3 70 65.7
Sopen05g006090 Solanum pennellii HOM05D003362 ORTHO05D003783 1.6e-15 86.3 70 67.1
Ah.06g183020 Amaranthus hybridus HOM05D003362 ORTHO05D003783 2.1e-15 85.9 77 57.1
Glyma.20G241700 Glycine max HOM05D003362 ORTHO05D003783 2.1e-15 85.9 85 56.5
CARHR165150 Cardamine hirsuta HOM05D003362 ORTHO05D003783 2.7e-15 85.5 62 69.4
Hma1.2p1_0629F.1_g192100 Hydrangea macrophylla HOM05D003362 ORTHO05D003783 2.7e-15 85.5 79 63.3
Medtr1g115890 Medicago truncatula HOM05D003362 ORTHO05D003783 2.7e-15 85.5 88 52.3
Psat6g237840 Pisum sativum HOM05D003362 ORTHO05D003783 3.6e-15 85.1 84 52.4
Solyc05g010320.4 Solanum lycopersicum HOM05D003362 ORTHO05D003783 3.6e-15 85.1 87 55.2
Aqoxy2G01950 Aquilegia oxysepala HOM05D003362 ORTHO05D003783 6.1e-15 84.3 82 58.5
Eucgr.F03816 Eucalyptus grandis HOM05D003362 ORTHO05D003783 8.0e-15 84.0 74 56.8
Sc06g0001890 Simmondsia chinensis HOM05D003362 ORTHO05D003783 1.0e-14 83.6 83 53.0
ECA232G4190 Erigeron canadensis HOM05D003362 ORTHO05D003783 1.4e-14 83.2 78 52.6
Phvul.002G276500 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 1.4e-14 83.2 81 55.6
AT3G55120 Arabidopsis thaliana HOM05D003362 ORTHO05D003783 1.8e-14 82.8 64 67.2
Ciclev10032697m.g Citrus clementina HOM05D003362 ORTHO05D003783 1.8e-14 82.8 78 64.1
COL.COLO4_10881 Corchorus olitorius HOM05D003362 ORTHO05D003783 2.3e-14 82.4 101 49.5
Lj5g0014981 Lotus japonicus HOM05D003362 ORTHO05D003783 2.3e-14 82.4 80 56.2
Lalb_Chr02g0143921 Lupinus albus HOM05D003362 ORTHO05D003783 2.3e-14 82.4 81 55.6
Medtr1g115870 Medicago truncatula HOM05D003362 ORTHO05D003783 2.3e-14 82.4 81 54.3
Oeu057578.1 Olea europaea HOM05D003362 ORTHO05D003783 2.3e-14 82.4 63 68.3
HanXRQChr15g0496871 Helianthus annuus HOM05D003362 ORTHO05D003783 3.0e-14 82.0 72 56.9
Peaxi162Scf00006g00088 Petunia axillaris HOM05D003362 ORTHO05D003783 3.0e-14 82.0 99 49.5
Solyc05g010310.3 Solanum lycopersicum HOM05D003362 ORTHO05D003783 3.0e-14 82.0 83 53.0
Sopen05g006080 Solanum pennellii HOM05D003362 ORTHO05D003783 3.0e-14 82.0 83 53.0
Peaxi162Scf00038g01957 Petunia axillaris HOM05D003362 ORTHO05D003783 3.9e-14 81.6 79 57.0
Phvul.007G008500 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 3.9e-14 81.6 81 56.8
A09p48130 Brassica napus HOM05D003362 ORTHO05D003783 5.2e-14 81.3 70 62.9
BraA09t40267Z Brassica rapa HOM05D003362 ORTHO05D003783 5.2e-14 81.3 70 62.9
Thhalv10010658m.g Eutrema salsugineum HOM05D003362 ORTHO05D003783 5.2e-14 81.3 62 66.1
Thecc.10G061200 Theobroma cacao HOM05D003362 ORTHO05D003783 5.2e-14 81.3 73 60.3
ATR0759G123 Amborella trichopoda HOM05D003362 ORTHO05D003783 6.7e-14 80.9 80 55.0
AL5G36240 Arabidopsis lyrata HOM05D003362 ORTHO05D003783 6.7e-14 80.9 79 58.2
CANSAT21G2171 Cannabis sativa HOM05D003362 ORTHO05D003783 6.7e-14 80.9 82 53.7
MD07G1186400 Malus domestica HOM05D003362 ORTHO05D003783 6.7e-14 80.9 81 53.1
Rhsim03G0098600 Rhododendron simsii HOM05D003362 ORTHO05D003783 6.7e-14 80.9 70 61.4
Nitab4.5_0000027g0470 Nicotiana tabacum HOM05D003362 ORTHO05D003783 8.8e-14 80.5 73 63.0
Nitab4.5_0005313g0010 Nicotiana tabacum HOM05D003362 ORTHO05D003783 8.8e-14 80.5 89 52.8
BcaC07g39836 Brassica carinata HOM05D003362 ORTHO05D003783 1.1e-13 80.1 70 62.9
BcaNung04348 Brassica carinata HOM05D003362 ORTHO05D003783 1.1e-13 80.1 88 54.5
CARHR165140 Cardamine hirsuta HOM05D003362 ORTHO05D003783 1.1e-13 80.1 86 50.0
Gohir.D13G021000 Gossypium hirsutum HOM05D003362 ORTHO05D003783 1.1e-13 80.1 63 66.7
Gorai.013G023400 Gossypium raimondii HOM05D003362 ORTHO05D003783 1.1e-13 80.1 63 66.7
SGA_v2.0_scaffold2G01424 Striga asiatica HOM05D003362 ORTHO05D003783 1.1e-13 80.1 67 67.2
C08p30380 Brassica napus HOM05D003362 ORTHO05D003783 1.5e-13 79.7 70 62.9
BolC8t50659H Brassica oleracea HOM05D003362 ORTHO05D003783 1.5e-13 79.7 70 62.9
BraA09t40269Z Brassica rapa HOM05D003362 ORTHO05D003783 2.0e-13 79.3 106 45.3
Gohir.A13G020400 Gossypium hirsutum HOM05D003362 ORTHO05D003783 2.0e-13 79.3 69 63.8
Carub.0008s2828 Capsella rubella HOM05D003362 ORTHO05D003783 2.6e-13 79.0 69 59.4
C08p30390 Brassica napus HOM05D003362 ORTHO05D003783 3.3e-13 78.6 114 43.9
BolC8t50661H Brassica oleracea HOM05D003362 ORTHO05D003783 3.3e-13 78.6 114 43.9
Sp2g30475 Schrenkiella parvula HOM05D003362 ORTHO05D003783 3.3e-13 78.6 59 62.7
BcaC07g39837 Brassica carinata HOM05D003362 ORTHO05D003783 4.4e-13 78.2 114 43.9
CARHR281510 Cardamine hirsuta HOM05D003362 ORTHO05D003783 4.4e-13 78.2 68 58.8
PGR044G1755 Punica granatum HOM05D003362 ORTHO05D003783 4.4e-13 78.2 65 63.1
AT5G66220 Arabidopsis thaliana HOM05D003362 ORTHO05D003783 7.4e-13 77.4 62 61.3
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 7.4e-13 77.4 62 61.3
MBI14_g22903_MAGBIO Magnolia biondii HOM05D003362 ORTHO05D003783 9.7e-13 77.0 72 58.3
Zm00001eb062510 Zea mays HOM05D003362 ORTHO05D003783 1.3e-12 76.6 82 50.0
BolC7t46557H Brassica oleracea HOM05D003362 ORTHO05D003783 2.2e-12 75.9 70 60.0
DCAR_027694 Daucus carota HOM05D003362 ORTHO05D003783 2.2e-12 75.9 68 57.4
AL8G45310 Arabidopsis lyrata HOM05D003362 ORTHO05D003783 4.8e-12 74.7 62 59.7
EL10Ac2g03495 Beta vulgaris HOM05D003362 ORTHO05D003783 4.8e-12 74.7 86 48.8
C07p61310 Brassica napus HOM05D003362 ORTHO05D003783 4.8e-12 74.7 70 58.6
Sed0018943 Sechium edule HOM05D003362 ORTHO05D003783 6.3e-12 74.3 64 64.1
Sc06g0001900 Simmondsia chinensis HOM05D003362 ORTHO05D003783 8.2e-12 73.9 69 58.0
Aa31LG10G10040 Aethionema arabicum HOM05D003362 ORTHO05D003783 1.1e-11 73.6 93 46.2
Lalb_Chr06g0164121 Lupinus albus HOM05D003362 ORTHO05D003783 1.4e-11 73.2 66 57.6
Os03g0819600 Oryza sativa ssp. japonica HOM05D003362 ORTHO05D003783 1.4e-11 73.2 89 49.4
HPP92_021163 Vanilla planifolia HOM05D003362 ORTHO05D003783 1.4e-11 73.2 63 55.6
CDE07G1335 Ceratophyllum demersum HOM05D003362 ORTHO05D003783 5.3e-11 71.2 94 47.9
Psat6g237920 Pisum sativum HOM05D003362 ORTHO05D003783 5.3e-11 71.2 65 55.4
Lsat_1_v5_gn_9_66221 Lactuca sativa HOM05D003362 ORTHO05D003783 7.0e-11 70.9 72 48.6
Eucgr.J01152 Eucalyptus grandis HOM05D003362 ORTHO05D003783 1.2e-10 70.1 67 52.2
HanXRQChr15g0496881 Helianthus annuus HOM05D003362 ORTHO05D003783 1.2e-10 70.1 80 46.2
PGR044G1348 Punica granatum HOM05D003362 ORTHO05D003783 1.2e-10 70.1 76 53.9
MELO3C025484.2 Cucumis melo HOM05D003362 ORTHO05D003783 2.0e-10 69.3 71 60.6
HanXRQChr15g0496901 Helianthus annuus HOM05D003362 ORTHO05D003783 3.5e-10 68.6 75 53.3
Psat6g238360 Pisum sativum HOM05D003362 ORTHO05D003783 3.5e-10 68.6 66 51.5
vmacro00636 Vaccinium macrocarpon HOM05D003362 ORTHO05D003783 4.5e-10 68.2 54 63.0
TPR.G30361 Trifolium pratense HOM05D003362 ORTHO05D003783 5.9e-10 67.8 66 51.5
VMungo0720G1901 Vigna mungo HOM05D003362 ORTHO05D003783 7.7e-10 67.4 67 53.7
TPR.G10424 Trifolium pratense HOM05D003362 ORTHO05D003783 1.3e-09 66.6 74 50.0
PSO407G0338 Papaver somniferum HOM05D003362 ORTHO05D003783 1.7e-09 66.2 80 48.8
Phvul.003G216600 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 1.7e-09 66.2 68 51.5
BcaB05g22785 Brassica carinata HOM05D003362 ORTHO05D003783 2.2e-09 65.9 59 59.3
CsaV3_5G026140 Cucumis sativus L. HOM05D003362 ORTHO05D003783 2.2e-09 65.9 84 48.8
Medtr1g115820 Medicago truncatula HOM05D003362 ORTHO05D003783 2.2e-09 65.9 66 50.0
Lj5g0021768 Lotus japonicus HOM05D003362 ORTHO05D003783 3.8e-09 65.1 66 47.0
VMungo0720G0350 Vigna mungo HOM05D003362 ORTHO05D003783 5.0e-09 64.7 66 48.5
Thhalv10004922m.g Eutrema salsugineum HOM05D003362 ORTHO05D003783 6.5e-09 64.3 47 63.8
Glyma.10G292200 Glycine max HOM05D003362 ORTHO05D003783 8.5e-09 63.9 66 50.0
Glyma.20G241600 Glycine max HOM05D003362 ORTHO05D003783 8.5e-09 63.9 66 50.0
Medtr1g115840 Medicago truncatula HOM05D003362 ORTHO05D003783 8.5e-09 63.9 64 54.7
CDE04G2587 Ceratophyllum demersum HOM05D003362 ORTHO05D003783 1.1e-08 63.5 83 44.6
Lj5g0007558 Lotus japonicus HOM05D003362 ORTHO05D003783 1.1e-08 63.5 66 47.0
arahy.Tifrunner.gnm1.ann1.425ZXH Arachis hypogaea HOM05D003362 ORTHO05D003783 1.5e-08 63.2 66 48.5
BcaB01g00125 Brassica carinata HOM05D003362 ORTHO05D003783 1.5e-08 63.2 71 52.1
Medtr1g115850 Medicago truncatula HOM05D003362 ORTHO05D003783 3.2e-08 62.0 65 50.8
Nn2g10542 Nelumbo nucifera HOM05D003362 ORTHO05D003783 4.2e-08 61.6 62 48.4
ATR0759G079 Amborella trichopoda HOM05D003362 ORTHO05D003783 5.5e-08 61.2 54 53.7
arahy.Tifrunner.gnm1.ann1.2GDU51 Arachis hypogaea HOM05D003362 ORTHO05D003783 5.5e-08 61.2 66 48.5
ClCG09G020280 Citrullus lanatus HOM05D003362 ORTHO05D003783 7.2e-08 60.8 68 57.4
Glyma.20G241500 Glycine max HOM05D003362 ORTHO05D003783 7.2e-08 60.8 64 46.9
Lj5g0004759 Lotus japonicus HOM05D003362 ORTHO05D003783 7.2e-08 60.8 66 45.5
Phvul.007G008600 Phaseolus vulgaris HOM05D003362 ORTHO05D003783 1.6e-07 59.7 64 45.3
SEGI_22659 Sequoiadendron giganteum HOM05D003362 ORTHO05D003783 2.1e-07 59.3 54 53.7
A09p48140 Brassica napus HOM05D003362 ORTHO05D003783 4.7e-07 58.2 61 49.2
ATR0759G124 Amborella trichopoda HOM05D003362 ORTHO05D003783 8.0e-07 57.4 57 47.4
AUR62015656 Chenopodium quinoa HOM05D003362 ORTHO05D003783 3.0e-06 55.5 50 60.0


User provided reference genes

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