Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0220701 Rosa chinensis HOM05D003925 ORTHO05D004832 1.4e-233 812.8 480 100.0
FvH4_5g28340 Fragaria vesca HOM05D003925 ORTHO05D004832 2.0e-195 686.0 475 79.8
FAN04G1563 Fragaria x ananassa HOM05D003925 ORTHO05D004832 3.5e-195 685.3 475 80.0
FAN18G2864 Fragaria x ananassa HOM05D003925 ORTHO05D004832 1.2e-190 670.2 489 76.7
Prupe.1G577500 Prunus persica HOM05D003925 ORTHO05D004832 7.8e-179 630.9 497 78.1
MD08G1240800 Malus domestica HOM05D003925 ORTHO05D004832 1.6e-168 596.7 488 74.2
MD15G1434000 Malus domestica HOM05D003925 ORTHO05D004832 7.5e-166 587.8 490 77.1
COL.COLO4_17737 Corchorus olitorius HOM05D003925 ORTHO05D004832 3.4e-158 562.4 468 70.1
Haze_10061 Corylus avellana HOM05D003925 ORTHO05D004832 4.4e-158 562.0 485 69.9
Gohir.A04G132700 Gossypium hirsutum HOM05D003925 ORTHO05D004832 3.6e-152 542.3 479 64.5
Dinv19400 Davidia involucrata HOM05D003925 ORTHO05D004832 3.1e-151 539.3 382 77.2
Nn1g08458 Nelumbo nucifera HOM05D003925 ORTHO05D004832 4.0e-151 538.9 380 74.7
QL02p100243 Quercus lobata HOM05D003925 ORTHO05D004832 2.6e-150 536.2 425 71.3
Duzib052G0643 Durio zibethinus HOM05D003925 ORTHO05D004832 3.4e-150 535.8 479 67.4
Nn5g27797 Nelumbo nucifera HOM05D003925 ORTHO05D004832 5.8e-150 535.0 380 75.0
TWI23G0121 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 1.7e-149 533.5 487 67.8
Lj5C262G4 Lonicera japonica HOM05D003925 ORTHO05D005835 3.8e-149 532.3 379 74.7
Hund15482 Selenicereus undatus HOM05D003925 ORTHO05D004832 3.8e-149 532.3 391 73.9
PGR142G2211 Punica granatum HOM05D003925 ORTHO05D004832 4.9e-149 531.9 491 62.7
Manes.07G023200 Manihot esculenta HOM05D003925 ORTHO05D004832 6.4e-149 531.6 478 64.2
Sed0019914 Sechium edule HOM05D003925 ORTHO05D004832 1.9e-148 530.0 467 65.5
Gohir.D04G176300 Gossypium hirsutum HOM05D003925 ORTHO05D004832 4.2e-148 528.9 479 63.3
Duzib132G1049 Durio zibethinus HOM05D003925 ORTHO05D004832 9.3e-148 527.7 478 64.9
Gorai.012G167900 Gossypium raimondii HOM05D003925 ORTHO05D004832 2.1e-147 526.6 479 63.3
Ciclev10000945m.g Citrus clementina HOM05D003925 ORTHO05D004832 3.5e-147 525.8 488 67.6
THA.LOC104799820 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 6.0e-147 525.0 461 65.1
Thecc.02G024000 Theobroma cacao HOM05D003925 ORTHO05D004832 6.0e-147 525.0 480 67.1
CAN.G798.55 Capsicum annuum HOM05D003925 ORTHO05D004832 1.7e-146 523.5 484 63.0
Actinidia00183 Actinidia chinensis HOM05D003925 ORTHO05D004832 8.7e-146 521.2 487 63.0
Actinidia39010 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.1e-145 520.8 486 65.4
AUR62040618 Chenopodium quinoa HOM05D003925 ORTHO05D004832 2.5e-145 519.6 451 64.5
TWI14G0879 Tripterygium wilfordii HOM05D003925 ORTHO05D004832 2.5e-145 519.6 489 66.5
CSS0002231 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 9.6e-145 517.7 478 64.0
Sc07g0004570 Simmondsia chinensis HOM05D003925 ORTHO05D004832 1.3e-144 517.3 390 72.6
PGSC0003DMG400024923 Solanum tuberosum HOM05D003925 ORTHO05D004832 1.3e-144 517.3 484 61.4
SGA_v2.0_scaffold42G15910 Striga asiatica HOM05D003925 ORTHO05D004832 1.1e-143 514.2 386 71.2
Cpa.g.sc30.25 Carica papaya HOM05D003925 ORTHO05D004832 2.4e-143 513.1 474 62.7
Ah.03g136840 Amaranthus hybridus HOM05D003925 ORTHO05D004832 6.9e-143 511.5 478 66.3
DCAR_006681 Daucus carota HOM05D003925 ORTHO05D004832 6.9e-143 511.5 455 62.2
CANSAT54G0877 Cannabis sativa HOM05D003925 ORTHO05D004832 2.6e-142 509.6 488 63.5
Glyma.12G167500 Glycine max HOM05D003925 ORTHO05D004832 5.8e-142 508.4 478 61.5
Psat1g223280 Pisum sativum HOM05D003925 ORTHO05D004832 5.8e-142 508.4 482 62.7
Manes.10G119400 Manihot esculenta HOM05D003925 ORTHO05D004832 7.6e-142 508.1 482 62.9
Lsat_1_v5_gn_9_121141 Lactuca sativa HOM05D003925 ORTHO05D004832 9.9e-142 507.7 380 71.3
Medtr2g005930 Medicago truncatula HOM05D003925 ORTHO05D004832 9.9e-142 507.7 488 61.9
Lsat_1_v5_gn_7_76521 Lactuca sativa HOM05D003925 ORTHO05D004832 2.2e-141 506.5 489 60.1
Aa31LG4G9470 Aethionema arabicum HOM05D003925 ORTHO05D004832 3.8e-141 505.8 474 61.0
MSTRG.5212 Avicennia marina HOM05D003925 ORTHO05D004832 3.8e-141 505.8 486 61.7
Carub.0007s1672 Capsella rubella HOM05D003925 ORTHO05D004832 3.8e-141 505.8 380 69.5
CARHR231760 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.9e-141 505.4 473 61.5
AUR62041951 Chenopodium quinoa HOM05D003925 ORTHO05D004832 4.9e-141 505.4 384 71.4
Gorai.002G216100 Gossypium raimondii HOM05D003925 ORTHO05D004832 4.9e-141 505.4 486 61.3
Gohir.D01G174000 Gossypium hirsutum HOM05D003925 ORTHO05D004832 8.4e-141 504.6 478 61.5
TPR.G2147 Trifolium pratense HOM05D003925 ORTHO05D004832 8.4e-141 504.6 484 63.6
Actinidia26166 Actinidia chinensis HOM05D003925 ORTHO05D004832 1.4e-140 503.8 475 62.7
HanXRQChr07g0187361 Helianthus annuus HOM05D003925 ORTHO05D004832 3.2e-140 502.7 483 62.9
Actinidia06473 Actinidia chinensis HOM05D003925 ORTHO05D004832 4.2e-140 502.3 479 62.0
EL10Ac6g14144 Beta vulgaris HOM05D003925 ORTHO05D004832 1.6e-139 500.4 382 72.0
Hma1.2p1_0884F.1_g232530 Hydrangea macrophylla HOM05D003925 ORTHO05D004832 2.7e-139 499.6 488 60.7
Thhalv10024818m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 1.0e-138 497.7 500 60.6
Phvul.006G218500 Phaseolus vulgaris HOM05D003925 ORTHO05D004832 2.3e-138 496.5 464 61.0
Cfa004507 Carpinus fangiana HOM05D003925 ORTHO05D005835 3.9e-138 495.7 382 71.5
TAR381G0375 Trochodendron aralioides HOM05D003925 ORTHO05D004832 1.9e-137 493.4 456 63.2
CDE08G0951 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 5.6e-137 491.9 380 69.2
SalBow3G3816 Salvia bowleyana HOM05D003925 ORTHO05D004832 1.6e-136 490.3 381 69.3
Eucgr.I02754 Eucalyptus grandis HOM05D003925 ORTHO05D004832 2.1e-136 490.0 483 67.3
Eucgr.L02024 Eucalyptus grandis HOM05D003925 ORTHO05D004832 3.6e-136 489.2 380 70.8
Sopen01g046090 Solanum pennellii HOM05D003925 ORTHO05D004832 3.6e-136 489.2 483 60.7
Aqoxy5G03033 Aquilegia oxysepala HOM05D003925 ORTHO05D004832 6.2e-136 488.4 494 57.3
MSTRG.16495 Avicennia marina HOM05D003925 ORTHO05D004832 6.2e-136 488.4 382 69.6
Solyc01g103680.3 Solanum lycopersicum HOM05D003925 ORTHO05D004832 6.2e-136 488.4 483 59.4
Nitab4.5_0002596g0090 Nicotiana tabacum HOM05D003925 ORTHO05D004832 3.1e-135 486.1 481 58.8
ECA240G1679 Erigeron canadensis HOM05D003925 ORTHO05D004832 4.0e-135 485.7 480 59.4
Oeu023407.1 Olea europaea HOM05D003925 ORTHO05D004832 6.9e-135 485.0 481 61.5
Lj6g0026503 Lotus japonicus HOM05D003925 ORTHO05D004832 2.0e-134 483.4 492 60.2
CiPaw.05G005700 Carya illinoinensis HOM05D003925 ORTHO05D004832 3.4e-134 482.6 383 69.7
ClCG10G007000 Citrullus lanatus HOM05D003925 ORTHO05D004832 4.5e-134 482.3 488 61.1
Nitab4.5_0000948g0030 Nicotiana tabacum HOM05D003925 ORTHO05D004832 7.6e-134 481.5 481 60.1
Dinv07476 Davidia involucrata HOM05D003925 ORTHO05D005835 9.9e-134 481.1 420 65.2
Oeu000132.1 Olea europaea HOM05D003925 ORTHO05D004832 1.3e-133 480.7 396 66.9
unitig_26.g9028 Utricularia gibba HOM05D003925 ORTHO05D005835 3.8e-133 479.2 482 58.3
CiPaw.06G173300 Carya illinoinensis HOM05D003925 ORTHO05D004832 4.9e-133 478.8 477 65.4
Glyma.16G003600 Glycine max HOM05D003925 ORTHO05D004832 4.9e-133 478.8 485 59.6
Migut.N00826 Erythranthe guttata HOM05D003925 ORTHO05D004832 2.4e-132 476.5 385 67.0
Peaxi162Scf00011g00941 Petunia axillaris HOM05D003925 ORTHO05D004832 2.4e-132 476.5 484 60.3
Rhsim11G0124300 Rhododendron simsii HOM05D003925 ORTHO05D004832 3.2e-132 476.1 491 58.9
MELO3C016507.2 Cucumis melo HOM05D003925 ORTHO05D004832 5.4e-132 475.3 489 58.5
vmacro01723 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 2.1e-131 473.4 383 66.3
Gohir.A01G182900 Gossypium hirsutum HOM05D003925 ORTHO05D004832 2.7e-131 473.0 477 58.9
CsaV3_3G006350 Cucumis sativus L. HOM05D003925 ORTHO05D004832 3.9e-130 469.2 488 57.0
Potri.004G223000 Populus trichocarpa HOM05D003925 ORTHO05D004832 3.9e-130 469.2 482 62.4
SEGI_07809 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 8.7e-130 468.0 379 62.8
Zm00001eb289240 Zea mays HOM05D003925 ORTHO05D004832 1.5e-129 467.2 389 64.8
Atru.chr6.781 Acer truncatum HOM05D003925 ORTHO05D004832 1.9e-129 466.8 484 59.1
HanXRQChr06g0181341 Helianthus annuus HOM05D003925 ORTHO05D004832 4.3e-129 465.7 476 59.5
VMungo0540G0371 Vigna mungo HOM05D003925 ORTHO05D004832 4.3e-129 465.7 491 57.4
Sp6g11590 Schrenkiella parvula HOM05D003925 ORTHO05D004832 5.6e-129 465.3 465 58.9
HanXRQChr16g0509421 Helianthus annuus HOM05D003925 ORTHO05D004832 7.4e-129 464.9 495 55.6
vmacro19868 Vaccinium macrocarpon HOM05D003925 ORTHO05D004832 1.3e-128 464.2 478 61.3
Atru.chr6.812 Acer truncatum HOM05D003925 ORTHO05D004832 2.8e-128 463.0 484 58.9
Eucgr.L02026 Eucalyptus grandis HOM05D003925 ORTHO05D004832 1.1e-127 461.1 317 77.6
ATR0584G077 Amborella trichopoda HOM05D003925 ORTHO05D004832 1.4e-127 460.7 381 66.7
Lalb_Chr15g0090731 Lupinus albus HOM05D003925 ORTHO05D004832 1.8e-127 460.3 486 57.0
Zm00001eb348650 Zea mays HOM05D003925 ORTHO05D004832 2.4e-127 459.9 387 62.8
Sabra01G0168900 Salix brachista HOM05D003925 ORTHO05D004832 5.3e-127 458.8 481 58.8
THA.LOC104800040 Tarenaya hassleriana HOM05D003925 ORTHO05D004832 1.2e-126 457.6 483 58.2
BraA03t11971Z Brassica rapa HOM05D003925 ORTHO05D004832 3.4e-126 456.1 379 66.0
arahy.Tifrunner.gnm1.ann1.0HG9JC Arachis hypogaea HOM05D003925 ORTHO05D004832 7.6e-126 454.9 475 59.2
Sp7g22330 Schrenkiella parvula HOM05D003925 ORTHO05D004832 1.6e-123 447.2 478 58.4
AL7G28890 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 6.7e-122 441.8 457 56.0
AT4G24330 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 8.7e-122 441.4 381 63.0
PSO170G6240 Papaver somniferum HOM05D003925 ORTHO05D004832 1.9e-121 440.3 491 54.6
BcaC01g04841 Brassica carinata HOM05D003925 ORTHO05D004832 4.3e-121 439.1 380 65.0
C07p53570 Brassica napus HOM05D003925 ORTHO05D004832 1.6e-120 437.2 478 57.9
Lj9C300G1 Lonicera japonica HOM05D003925 ORTHO05D004832 1.6e-120 437.2 420 60.2
arahy.Tifrunner.gnm1.ann1.D6FTCL Arachis hypogaea HOM05D003925 ORTHO05D004832 4.8e-120 435.6 499 55.9
Carub.0008s0983 Capsella rubella HOM05D003925 ORTHO05D004832 8.2e-120 434.9 383 63.4
BcaB01g02930 Brassica carinata HOM05D003925 ORTHO05D004832 4.1e-119 432.6 379 63.6
BolC1t01894H Brassica oleracea HOM05D003925 ORTHO05D004832 4.1e-119 432.6 379 63.9
BraA01t01508Z Brassica rapa HOM05D003925 ORTHO05D004832 4.1e-119 432.6 469 58.4
C01p19670 Brassica napus HOM05D003925 ORTHO05D004832 6.9e-119 431.8 379 63.6
Aa31LG3G6740 Aethionema arabicum HOM05D003925 ORTHO05D004832 9.0e-119 431.4 474 55.3
AT5G49945 Arabidopsis thaliana HOM05D003925 ORTHO05D004832 1.2e-118 431.0 475 55.8
PSO782G4904 Papaver somniferum HOM05D003925 ORTHO05D004832 2.0e-118 430.3 489 53.4
A01p15700 Brassica napus HOM05D003925 ORTHO05D004832 3.4e-118 429.5 473 59.0
BolC3t15651H Brassica oleracea HOM05D003925 ORTHO05D004832 1.7e-117 427.2 475 56.2
BcaC06g32885 Brassica carinata HOM05D003925 ORTHO05D004832 2.2e-117 426.8 336 67.6
Ca_00045_v3 Cicer arietinum L. HOM05D003925 ORTHO05D004832 2.2e-117 426.8 383 63.4
C03p33290 Brassica napus HOM05D003925 ORTHO05D004832 2.9e-117 426.4 475 56.0
BolC7t45848H Brassica oleracea HOM05D003925 ORTHO05D004832 1.1e-116 424.5 469 58.4
AL8G23900 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 1.4e-116 424.1 477 56.6
BcaNung05636 Brassica carinata HOM05D003925 ORTHO05D004832 1.9e-116 423.7 486 55.1
BraA03t14587Z Brassica rapa HOM05D003925 ORTHO05D004832 3.2e-116 422.9 329 68.4
A03p55280 Brassica napus HOM05D003925 ORTHO05D004832 4.2e-116 422.5 475 55.4
A03p27580 Brassica napus HOM05D003925 ORTHO05D004832 7.2e-116 421.8 379 62.0
HPP92_013757 Vanilla planifolia HOM05D003925 ORTHO05D004832 7.2e-116 421.8 385 60.5
CSS0020156 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 1.2e-115 421.0 414 59.4
MBI09_g03430_MAGBIO Magnolia biondii HOM05D003925 ORTHO05D004832 3.5e-115 419.5 380 62.9
Thhalv10013427m.g Eutrema salsugineum HOM05D003925 ORTHO05D004832 2.3e-114 416.8 474 53.2
CSS0030901 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 2.0e-110 403.7 393 60.1
CARHR258770 Cardamine hirsuta HOM05D003925 ORTHO05D004832 7.7e-110 401.7 383 60.3
Os05g0432400 Oryza sativa ssp. japonica HOM05D003925 ORTHO05D004832 1.7e-109 400.6 388 57.7
CDE06G0202 Ceratophyllum demersum HOM05D003925 ORTHO05D004832 3.6e-107 392.9 476 51.1
Mapoly0037s0012 Marchantia polymorpha HOM05D003925 ORTHO05D004832 6.7e-106 388.7 383 55.4
CARHR231750 Cardamine hirsuta HOM05D003925 ORTHO05D004832 4.3e-105 386.0 285 69.8
SGA_v2.0_scaffold8G04435 Striga asiatica HOM05D003925 ORTHO05D004832 4.7e-99 365.9 413 57.6
SMO356G0110 Selaginella moellendorffii HOM05D003925 ORTHO05D004832 3.0e-98 363.2 380 51.6
ECA236G3450 Erigeron canadensis HOM05D003925 ORTHO05D004832 1.4e-95 354.4 385 56.1
Pp3c5_6620 Physcomitrium patens HOM05D003925 ORTHO05D004832 1.7e-85 320.9 379 45.6
BcaC09g50878 Brassica carinata HOM05D003925 ORTHO05D004832 6.1e-83 312.4 269 66.9
SEGI_11230 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 4.2e-76 289.7 236 60.6
Cc02_g23030 Coffea canephora HOM05D003925 ORTHO05D004832 2.2e-72 277.3 193 78.8
AagrBONN_evm.TU.Sc2ySwM_362.431 Anthoceros agrestis HOM05D003925 ORTHO05D004832 1.8e-58 231.1 246 51.2
CBR_g4722 Chara braunii HOM05D003925 ORTHO05D004832 7.5e-57 225.7 361 39.1
GSVIVG01023266001 Vitis vinifera HOM05D003925 ORTHO05D004832 7.0e-55 219.2 194 68.0
SHI34757 Sapria himalayana HOM05D003925 ORTHO05D004832 1.9e-47 194.5 202 53.5
SEGI_10393 Sequoiadendron giganteum HOM05D003925 ORTHO05D004832 3.3e-44 183.7 144 66.0
BcaC01g04842 Brassica carinata HOM05D003925 ORTHO05D004832 2.9e-40 170.6 107 79.4
CSS0013131 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 3.7e-40 170.2 135 72.6
Haze_10058 Corylus avellana HOM05D003925 ORTHO05D004832 1.1e-39 168.7 144 70.8
CSS0019842 Camellia sinensis var. sinensis HOM05D003925 ORTHO05D004832 4.6e-38 163.3 130 72.3
Migut.B00784 Erythranthe guttata HOM05D003925 ORTHO05D004832 4.6e-38 163.3 128 72.7
CAN.G697.8 Capsicum annuum HOM05D003925 ORTHO05D004832 3.0e-37 160.6 118 64.4
Lalb_Chr20g0123671 Lupinus albus HOM05D003925 ORTHO05D004832 2.0e-33 147.9 100 73.0
Cre02.g106300 Chlamydomonas reinhardtii HOM05D003925 ORTHO05D004832 4.9e-32 143.3 342 34.8
Lj6g0024462 Lotus japonicus HOM05D003925 ORTHO05D004832 9.0e-26 122.5 321 33.3
CARHR216310 Cardamine hirsuta HOM05D003925 ORTHO05D004832 8.4e-24 115.9 100 63.0
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.7e-21 108.2 124 45.2
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.7e-21 108.2 124 45.2
MCO13G620 Micromonas commoda HOM05D003925 ORTHO05D004832 3.0e-21 107.5 334 27.8
AL3G33580 Arabidopsis lyrata HOM05D003925 ORTHO05D004832 4.9e-16 90.1 234 33.3
CAN.G386.33 Capsicum annuum HOM05D003925 ORTHO05D004832 4.6e-14 83.6 71 49.3
CAN.G963.3 Capsicum annuum HOM05D003925 ORTHO05D004832 2.5e-12 77.8 47 70.2
BolC8t48574H Brassica oleracea HOM05D003925 ORTHO05D004832 2.0e-09 68.2 109 49.5
Thecc.02G021600 Theobroma cacao HOM05D003925 ORTHO05D004832 1.7e-08 65.1 71 54.9
Thecc.02G021100 Theobroma cacao HOM05D003925 ORTHO05D004832 7.9e-06 56.2 44 75.0


User provided reference genes

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