Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0219661 Rosa chinensis HOM05D005817 ORTHO05D007140 5.1e-168 594.3 305 100.0
FAN18G1253 Fragaria x ananassa HOM05D005817 ORTHO05D007140 2.2e-150 535.8 304 90.1
FvH4_5g27830 Fragaria vesca HOM05D005817 ORTHO05D007140 6.3e-150 534.3 304 89.8
Prupe.1G585700 Prunus persica HOM05D005817 ORTHO05D007140 2.6e-148 528.9 305 87.2
MD08G1248300 Malus domestica HOM05D005817 ORTHO05D007140 3.6e-145 518.5 305 84.9
FAN04G1604 Fragaria x ananassa HOM05D005817 ORTHO05D007140 7.0e-141 504.2 372 73.4
MD15G1443200 Malus domestica HOM05D005817 ORTHO05D007140 6.5e-139 497.7 313 81.8
FAN08G2336 Fragaria x ananassa HOM05D005817 ORTHO05D007140 4.0e-128 461.8 373 69.7
QL02p103359 Quercus lobata HOM05D005817 ORTHO05D007140 7.0e-125 451.1 297 78.1
CANSAT01G0715 Cannabis sativa HOM05D005817 ORTHO05D007140 1.6e-124 449.9 300 78.7
CiPaw.06G176700 Carya illinoinensis HOM05D005817 ORTHO05D007140 5.9e-124 448.0 301 77.1
Ciclev10002025m.g Citrus clementina HOM05D005817 ORTHO05D007140 7.7e-124 447.6 299 78.6
Lalb_Chr07g0176811 Lupinus albus HOM05D005817 ORTHO05D007140 2.9e-123 445.7 301 75.7
Actinidia01635 Actinidia chinensis HOM05D005817 ORTHO05D007140 4.2e-122 441.8 302 75.8
TAR628G1209 Trochodendron aralioides HOM05D005817 ORTHO05D007140 5.5e-122 441.4 299 76.3
Hma1.2p1_0052F.1_g030020 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 2.1e-121 439.5 305 76.4
Thecc.06G019900 Theobroma cacao HOM05D005817 ORTHO05D007140 4.7e-121 438.3 302 77.8
Atru.chr6.226 Acer truncatum HOM05D005817 ORTHO05D007140 8.0e-121 437.6 299 75.9
CSS0044256 Camellia sinensis var. sinensis HOM05D005817 ORTHO05D007140 1.0e-120 437.2 305 73.8
CsaV3_5G027420 Cucumis sativus L. HOM05D005817 ORTHO05D007140 1.4e-120 436.8 299 76.3
Oeu028475.1 Olea europaea HOM05D005817 ORTHO05D007140 1.8e-120 436.4 303 74.9
TWI14G0757 Tripterygium wilfordii HOM05D005817 ORTHO05D007140 1.8e-120 436.4 302 74.8
Lj4g0018327 Lotus japonicus HOM05D005817 ORTHO05D007140 3.0e-120 435.6 301 73.4
Oeu028476.1 Olea europaea HOM05D005817 ORTHO05D007140 6.8e-120 434.5 303 74.6
PSO017G5300 Papaver somniferum HOM05D005817 ORTHO05D007140 1.2e-119 433.7 301 72.8
Ca_13529_v3 Cicer arietinum L. HOM05D005817 ORTHO05D007140 2.0e-119 433.0 298 74.8
PSO170G5162 Papaver somniferum HOM05D005817 ORTHO05D007140 3.4e-119 432.2 301 72.4
Nn5g27184 Nelumbo nucifera HOM05D005817 ORTHO05D007140 4.4e-119 431.8 301 74.4
Cc02_g23610 Coffea canephora HOM05D005817 ORTHO05D007140 1.7e-118 429.9 299 74.9
Gohir.D06G122800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.7e-118 429.9 299 75.9
Duzib160G0844 Durio zibethinus HOM05D005817 ORTHO05D007140 2.2e-118 429.5 299 77.3
Phvul.003G075900 Phaseolus vulgaris HOM05D005817 ORTHO05D007140 3.7e-118 428.7 298 74.5
Gorai.010G142900 Gossypium raimondii HOM05D005817 ORTHO05D007140 4.9e-118 428.3 299 75.6
Aqoxy6G00025 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 6.3e-118 427.9 301 74.4
Eucgr.I02797 Eucalyptus grandis HOM05D005817 ORTHO05D007140 1.1e-117 427.2 303 73.6
Gohir.A06G115800 Gossypium hirsutum HOM05D005817 ORTHO05D007140 1.4e-117 426.8 299 76.3
arahy.Tifrunner.gnm1.ann1.NEQE4P Arachis hypogaea HOM05D005817 ORTHO05D007140 2.4e-117 426.0 316 69.9
Haze_09983 Corylus avellana HOM05D005817 ORTHO05D007140 2.4e-117 426.0 366 63.1
Psat4g000960 Pisum sativum HOM05D005817 ORTHO05D007140 4.1e-117 425.2 298 73.5
TAR376G0556 Trochodendron aralioides HOM05D005817 ORTHO05D007140 5.4e-117 424.9 301 73.8
arahy.Tifrunner.gnm1.ann1.86KQ48 Arachis hypogaea HOM05D005817 ORTHO05D007140 9.2e-117 424.1 316 69.6
Glyma.07G272500 Glycine max HOM05D005817 ORTHO05D007140 2.7e-116 422.5 303 73.9
TPR.G6004 Trifolium pratense HOM05D005817 ORTHO05D007140 2.7e-116 422.5 302 72.8
Nitab4.5_0007689g0010 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.0e-115 420.6 298 73.2
Solyc01g103020.4 Solanum lycopersicum HOM05D005817 ORTHO05D007140 6.6e-115 417.9 299 72.2
Sabra01G0174300 Salix brachista HOM05D005817 ORTHO05D007140 1.9e-114 416.4 325 69.5
Sed0006174 Sechium edule HOM05D005817 ORTHO05D007140 2.5e-114 416.0 300 73.0
Medtr4g134630 Medicago truncatula HOM05D005817 ORTHO05D007140 9.5e-114 414.1 294 73.1
THA.LOC104824089 Tarenaya hassleriana HOM05D005817 ORTHO05D007140 1.2e-113 413.7 298 72.8
PGSC0003DMG400020713 Solanum tuberosum HOM05D005817 ORTHO05D007140 1.6e-113 413.3 299 71.6
CAN.G855.54 Capsicum annuum HOM05D005817 ORTHO05D007140 3.6e-113 412.1 298 72.8
COL.COLO4_31118 Corchorus olitorius HOM05D005817 ORTHO05D007140 6.1e-113 411.4 334 69.2
Lsat_1_v5_gn_9_83341 Lactuca sativa HOM05D005817 ORTHO05D007140 6.1e-113 411.4 307 72.6
Rhsim05G0115500 Rhododendron simsii HOM05D005817 ORTHO05D007140 6.1e-113 411.4 350 64.3
PGR142G3472 Punica granatum HOM05D005817 ORTHO05D007140 3.0e-112 409.1 302 70.9
HanXRQChr15g0469671 Helianthus annuus HOM05D005817 ORTHO05D007140 6.8e-112 407.9 308 71.8
EL10Ac6g13990 Beta vulgaris HOM05D005817 ORTHO05D007140 1.5e-111 406.8 302 70.5
Ah.03g136770 Amaranthus hybridus HOM05D005817 ORTHO05D007140 8.3e-110 401.0 321 66.4
vmacro19830 Vaccinium macrocarpon HOM05D005817 ORTHO05D007140 1.6e-108 396.7 281 72.6
CDE07G1199 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 2.0e-108 396.4 296 70.6
Sp2g13800 Schrenkiella parvula HOM05D005817 ORTHO05D007140 1.3e-107 393.7 306 69.0
Migut.N00865 Erythranthe guttata HOM05D005817 ORTHO05D007140 3.0e-107 392.5 302 68.5
SGA_v2.0_scaffold8G04460 Striga asiatica HOM05D005817 ORTHO05D007140 8.6e-107 391.0 299 69.2
CDE08G0344 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 3.3e-106 389.0 293 70.0
ATR1089G128 Amborella trichopoda HOM05D005817 ORTHO05D007140 7.3e-106 387.9 303 68.6
AT2G02570 Arabidopsis thaliana HOM05D005817 ORTHO05D007140 1.6e-105 386.7 300 66.7
Carub.0005s0157 Capsella rubella HOM05D005817 ORTHO05D007140 1.4e-104 383.6 302 67.5
Lj9C259G5 Lonicera japonica HOM05D001465 ORTHO05D001434 1.4e-104 383.6 281 71.5
Thhalv10004677m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 1.8e-104 383.3 309 67.0
GSVIVG01023145001 Vitis vinifera HOM05D005817 ORTHO05D007140 8.9e-104 380.9 255 79.6
BcaC06g31224 Brassica carinata HOM05D005817 ORTHO05D007140 2.6e-103 379.4 303 67.3
Manes.10G106400 Manihot esculenta HOM05D005817 ORTHO05D007140 1.3e-102 377.1 252 78.6
C07p33290 Brassica napus HOM05D005817 ORTHO05D007140 1.7e-102 376.7 306 67.0
BolC7t43840H Brassica oleracea HOM05D005817 ORTHO05D007140 1.7e-102 376.7 306 67.0
A06p43560 Brassica napus HOM05D005817 ORTHO05D007140 1.9e-101 373.2 306 67.0
MBI06_g16620_MAGBIO Magnolia biondii HOM05D005817 ORTHO05D007140 1.9e-101 373.2 261 74.7
BcaC03g17157 Brassica carinata HOM05D005817 ORTHO05D007140 3.2e-101 372.5 302 65.6
Potri.004G229200 Populus trichocarpa HOM05D005817 ORTHO05D007140 1.6e-100 370.2 252 76.2
Hund15375 Selenicereus undatus HOM05D005817 ORTHO05D007140 1.6e-100 370.2 274 70.4
ECA236G3641 Erigeron canadensis HOM05D000284 ORTHO05D000805 2.0e-100 369.8 282 72.3
ClCG11G000310 Citrullus lanatus HOM05D005817 ORTHO05D007140 3.5e-100 369.0 311 66.6
Dinv29679 Davidia involucrata HOM05D005817 ORTHO05D007140 4.6e-100 368.6 255 75.3
Manes.07G030600 Manihot esculenta HOM05D005817 ORTHO05D007140 4.6e-100 368.6 252 76.2
AUR62043876 Chenopodium quinoa HOM05D005817 ORTHO05D007140 2.3e-99 366.3 280 68.9
BraA06t27241Z Brassica rapa HOM05D005817 ORTHO05D007140 1.1e-98 364.0 332 62.3
Peaxi162Scf00011g01920 Petunia axillaris HOM05D005817 ORTHO05D007140 1.9e-98 363.2 340 59.1
Glyma.17G001900 Glycine max HOM05D005817 ORTHO05D007140 4.3e-98 362.1 255 76.1
Actinidia26194 Actinidia chinensis HOM05D005817 ORTHO05D007140 5.8e-95 351.7 319 63.3
Aa31LG2G7570 Aethionema arabicum HOM05D005817 ORTHO05D007140 1.3e-94 350.5 324 59.9
VMungo1215G1434 Vigna mungo HOM05D005817 ORTHO05D007140 3.2e-93 345.9 206 83.5
C02p50820 Brassica napus HOM05D005817 ORTHO05D007140 2.7e-92 342.8 296 64.2
BolC2t11164H Brassica oleracea HOM05D005817 ORTHO05D007140 2.3e-91 339.7 299 63.5
Sopen01g045430 Solanum pennellii HOM05D005817 ORTHO05D007140 6.6e-91 338.2 230 74.8
Sc03g0006230 Simmondsia chinensis HOM05D005817 ORTHO05D007140 2.5e-90 336.3 205 80.5
Lj5C284T7 Lonicera japonica HOM05D005817 ORTHO05D007140 1.6e-89 333.6 209 80.9
Mapoly0107s0026 Marchantia polymorpha HOM05D005817 ORTHO05D007140 2.8e-89 332.8 302 59.6
AL5G11840 Arabidopsis lyrata HOM05D005817 ORTHO05D007140 3.6e-89 332.4 259 66.4
unitig_22.g6849 Utricularia gibba HOM05D005817 ORTHO05D007140 3.6e-89 332.4 344 54.9
Duzib235G1547 Durio zibethinus HOM05D005817 ORTHO05D007140 8.1e-89 331.3 245 74.3
Nitab4.5_0003247g0070 Nicotiana tabacum HOM05D005817 ORTHO05D007140 1.1e-88 330.9 244 71.3
Os08g0109900 Oryza sativa ssp. japonica HOM05D005817 ORTHO05D007140 1.5e-87 327.0 253 68.4
AUR62032450 Chenopodium quinoa HOM05D005817 ORTHO05D007140 2.6e-87 326.2 285 62.8
SHI04993 Sapria himalayana HOM05D005817 ORTHO05D007140 3.4e-87 325.9 321 57.9
Aqoxy385s001 Aquilegia oxysepala HOM05D005817 ORTHO05D007140 1.9e-85 320.1 301 61.5
CDE04G1950 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 9.6e-82 307.8 249 65.9
A02p33050 Brassica napus HOM05D005817 ORTHO05D007140 1.2e-81 307.4 299 59.5
Pp3c10_3580 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.2e-81 307.4 325 52.0
HPP92_002041 Vanilla planifolia HOM05D005817 ORTHO05D007140 1.2e-81 307.4 255 65.1
Hma1.2p1_0052F.1_g030010 Hydrangea macrophylla HOM05D005817 ORTHO05D007140 3.1e-80 302.8 184 84.2
AagrBONN_evm.TU.Sc2ySwM_117.207 Anthoceros agrestis HOM05D005817 ORTHO05D007140 8.9e-80 301.2 295 54.2
Cpa.g.sc173.14 Carica papaya HOM05D005817 ORTHO05D007140 1.3e-78 297.4 242 66.5
CDE02G1227 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.7e-78 297.0 294 56.8
RcHm_v2.0_Chr5g0068831 Rosa chinensis HOM05D005817 ORTHO05D007140 1.7e-78 297.0 159 97.5
BraA02t08326Z Brassica rapa HOM05D005817 ORTHO05D007140 6.6e-75 285.0 268 59.7
Lalb_Chr12g0195861 Lupinus albus HOM05D005817 ORTHO05D007140 2.6e-71 273.1 165 83.0
SMO117G0163 Selaginella moellendorffii HOM05D005817 ORTHO05D007140 9.9e-71 271.2 200 68.5
MSTRG.27880 Avicennia marina HOM05D005817 ORTHO05D007140 1.3e-70 270.8 234 63.2
Pp3c14_9240 Physcomitrium patens HOM05D005817 ORTHO05D007140 1.9e-69 266.9 293 51.9
Pp3c10_3582 Physcomitrium patens HOM05D005817 ORTHO05D007140 2.4e-69 266.5 224 61.2
Pp3c1_22040 Physcomitrium patens HOM05D005817 ORTHO05D007140 3.9e-67 259.2 295 50.2
CBR_g40810 Chara braunii HOM05D005817 ORTHO05D007140 1.9e-66 256.9 358 45.3
MSTRG.601 Avicennia marina HOM05D005817 ORTHO05D007140 9.3e-61 238.0 207 62.3
Dinv29634 Davidia involucrata HOM05D005817 ORTHO05D007140 4.9e-54 215.7 155 69.7
Zm00001eb174130 Zea mays HOM05D005817 ORTHO05D007140 2.1e-49 200.3 133 81.2
VMungo0766G0001 Vigna mungo HOM05D005817 ORTHO05D007140 1.5e-31 141.0 122 59.0
MCO12G229 Micromonas commoda HOM05D005817 ORTHO05D007140 3.9e-27 126.3 300 31.3
Cre02.g106550 Chlamydomonas reinhardtii HOM05D005817 ORTHO05D007140 6.3e-25 119.0 329 31.3
PRCOL_00002712 Prasinoderma coloniale HOM05D005817 ORTHO05D007140 5.7e-18 95.9 329 29.2
VMungo1148G0001 Vigna mungo HOM05D005817 ORTHO05D007140 8.2e-17 92.0 78 61.5
FvH4_3g40414 Fragaria vesca HOM05D005817 ORTHO05D007140 1.0e-14 85.1 57 73.7
SEGI_07435 Sequoiadendron giganteum HOM05D005817 ORTHO05D007140 1.7e-14 84.3 89 52.8
Thhalv10005196m.g Eutrema salsugineum HOM05D005817 ORTHO05D007140 9.4e-13 78.6 52 78.8
COL.COLO4_38165 Corchorus olitorius HOM05D011921 ORTHO05D160408 1.7e-09 67.8 161 37.3
Lalb_Chr12g0195851 Lupinus albus HOM05D005817 ORTHO05D007140 9.1e-08 62.0 53 56.6
CDE04G0373 Ceratophyllum demersum HOM05D005817 ORTHO05D007140 1.6e-07 61.2 46 73.9


User provided reference genes

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